RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 CLN3Q13286 438 aa14.25□□□□□ -0.13
PTPRF-201ENST00000359947 GDPGP1Q6ZNW5 385 aa14.25□□□□□ -0.13
PTPRF-201ENST00000359947 SLC43A2Q8N370 569 aa14.25□□□□□ -0.13
PTPRF-201ENST00000359947 FAM71E2Q8N5Q1 922 aa14.25□□□□□ -0.13
PTPRF-201ENST00000359947 LINC01599Q8WXQ3 324 aa14.25□□□□□ -0.13
PTPRF-201ENST00000359947 SLC22A11Q9NSA0 550 aa14.25□□□□□ -0.13
PTPRF-201ENST00000359947 ADAMTSL3P82987 1691 aa14.25□□□□□ -0.13
PTPRF-201ENST00000359947 A0A0B4J2A0 478 aa14.25□□□□□ -0.13
PTPRF-201ENST00000359947 POM121CA8CG34 1229 aa14.25□□□□□ -0.13
PTPRF-201ENST00000359947 ASTLQ6HA08 431 aaPredicted RBP14.25□□□□□ -0.13
PTPRF-201ENST00000359947 FAM71E1Q6IPT2 247 aa14.25□□□□□ -0.13
PTPRF-201ENST00000359947 TEX37Q96LM6 180 aa14.25□□□□□ -0.13
PTPRF-201ENST00000359947 SHPKQ9UHJ6 478 aa14.25□□□□□ -0.13
PTPRF-201ENST00000359947 TMEM82A0PJX8 343 aa14.25□□□□□ -0.13
PTPRF-201ENST00000359947 RAB40ALP0C0E4 278 aa14.25□□□□□ -0.13
PTPRF-201ENST00000359947 CMTM2Q8TAZ6 248 aa14.25□□□□□ -0.13
PTPRF-201ENST00000359947 RAB40AQ8WXH6 277 aa14.25□□□□□ -0.13
PTPRF-201ENST00000359947 STACQ99469 402 aa14.25□□□□□ -0.13
PTPRF-201ENST00000359947 TMEM43Q9BTV4 400 aa14.25□□□□□ -0.13
PTPRF-201ENST00000359947 SELEP16581 610 aa14.25□□□□□ -0.13
PTPRF-201ENST00000359947 CD22P20273 847 aa14.25□□□□□ -0.13
PTPRF-201ENST00000359947 PCSK6P29122 969 aa14.25□□□□□ -0.13
PTPRF-201ENST00000359947 AGBL4Q5VU57 503 aa14.25□□□□□ -0.13
PTPRF-201ENST00000359947 ZNF546Q86UE3 836 aa14.25□□□□□ -0.13
PTPRF-201ENST00000359947 OR51F2Q8NH61 342 aa14.25□□□□□ -0.13
PTPRF-201ENST00000359947 OR51E1Q8TCB6 317 aa14.25□□□□□ -0.13
PTPRF-201ENST00000359947 SLC25A43Q8WUT9 341 aaPredicted RBP14.25□□□□□ -0.13
PTPRF-201ENST00000359947 PINX1Q96BK5 328 aaKnown RBP14.25□□□□□ -0.13
PTPRF-201ENST00000359947 CDX2Q99626 313 aaPredicted RBP14.25□□□□□ -0.13
PTPRF-201ENST00000359947 ASB4Q9Y574 426 aa14.25□□□□□ -0.13
PTPRF-201ENST00000359947 ABCD4O14678 606 aa14.24□□□□□ -0.13
PTPRF-201ENST00000359947 TESK1Q15569 626 aa14.24□□□□□ -0.13
PTPRF-201ENST00000359947 EBPQ15125 230 aaKnown RBP14.24□□□□□ -0.13
PTPRF-201ENST00000359947 Q499Y3 187 aa14.24□□□□□ -0.13
PTPRF-201ENST00000359947 CA13Q8N1Q1 262 aa14.24□□□□□ -0.13
PTPRF-201ENST00000359947 A0A1W2PR80 420 aa14.24□□□□□ -0.13
PTPRF-201ENST00000359947 EIF4E2O60573 245 aaKnown RBP14.24□□□□□ -0.13
PTPRF-201ENST00000359947 MT-ATP6P00846 226 aa14.24□□□□□ -0.13
PTPRF-201ENST00000359947 GLI4P10075 376 aa14.24□□□□□ -0.13
PTPRF-201ENST00000359947 SLC35A2P78381 396 aa14.24□□□□□ -0.13
PTPRF-201ENST00000359947 WDR5BQ86VZ2 330 aa14.24□□□□□ -0.13
PTPRF-201ENST00000359947 C16orf52Q8NHV5 167 aa14.24□□□□□ -0.13
PTPRF-201ENST00000359947 GPR119Q8TDV5 335 aa14.24□□□□□ -0.13
PTPRF-201ENST00000359947 SLC22A23A1A5C7 686 aa14.24□□□□□ -0.13
PTPRF-201ENST00000359947 METTL12A8MUP2 240 aa14.24□□□□□ -0.13
PTPRF-201ENST00000359947 I6L893 689 aaPredicted RBP14.24□□□□□ -0.13
PTPRF-201ENST00000359947 SPRY3O43610 288 aa14.24□□□□□ -0.13
PTPRF-201ENST00000359947 NPY4RP50391 375 aa14.24□□□□□ -0.13
PTPRF-201ENST00000359947 PRR7Q8TB68 274 aa14.24□□□□□ -0.13
PTPRF-201ENST00000359947 KISS1RQ969F8 398 aaPredicted RBP14.24□□□□□ -0.13
PTPRF-201ENST00000359947 ZPBPQ9BS86 351 aa14.24□□□□□ -0.13
PTPRF-201ENST00000359947 MED29Q9NX70 200 aa14.24□□□□□ -0.13
PTPRF-201ENST00000359947 CTSFQ9UBX1 484 aa14.24□□□□□ -0.13
PTPRF-201ENST00000359947 SCN9AQ15858 1988 aa14.24□□□□□ -0.13
PTPRF-201ENST00000359947 TCRBV3S1A0A5B6 114 aa14.24□□□□□ -0.13
PTPRF-201ENST00000359947 CPT2P23786 658 aa14.24□□□□□ -0.13
PTPRF-201ENST00000359947 MRPS10P82664 201 aaKnown RBP14.24□□□□□ -0.13
PTPRF-201ENST00000359947 DPTQ07507 201 aa14.24□□□□□ -0.13
PTPRF-201ENST00000359947 PMPCAQ10713 525 aa14.24□□□□□ -0.13
PTPRF-201ENST00000359947 SPACA5Q96QH8 159 aa14.24□□□□□ -0.13
PTPRF-201ENST00000359947 PDCD1LG2Q9BQ51 273 aa14.24□□□□□ -0.13
PTPRF-201ENST00000359947 T-ENOLP0DO92 83 aa14.24□□□□□ -0.13
PTPRF-201ENST00000359947 TMEM104Q8NE00 496 aa14.24□□□□□ -0.13
PTPRF-201ENST00000359947 ZNF419Q96HQ0 510 aaPredicted RBP14.24□□□□□ -0.13
PTPRF-201ENST00000359947 TIMM10BQ9Y5J6 103 aa14.24□□□□□ -0.13
PTPRF-201ENST00000359947 GFYI3L273 518 aa14.23□□□□□ -0.13
PTPRF-201ENST00000359947 ARHGAP33O14559 1287 aa14.23□□□□□ -0.13
PTPRF-201ENST00000359947 GLULP15104 373 aa14.23□□□□□ -0.13
PTPRF-201ENST00000359947 METAP1P53582 386 aa14.23□□□□□ -0.13
PTPRF-201ENST00000359947 OR1C1Q15619 314 aa14.23□□□□□ -0.13
PTPRF-201ENST00000359947 NXNL2Q5VZ03 156 aa14.23□□□□□ -0.13
PTPRF-201ENST00000359947 H2BFWTQ7Z2G1 175 aa14.23□□□□□ -0.13
PTPRF-201ENST00000359947 PLPP6Q8IY26 295 aa14.23□□□□□ -0.13
PTPRF-201ENST00000359947 ZDHHC19Q8WVZ1 309 aaPredicted RBP14.23□□□□□ -0.13
PTPRF-201ENST00000359947 SDF2Q99470 211 aa14.23□□□□□ -0.13
PTPRF-201ENST00000359947 OR6C76A6NM76 312 aa14.23□□□□□ -0.13
PTPRF-201ENST00000359947 SOX18P35713 384 aa14.23□□□□□ -0.13
PTPRF-201ENST00000359947 POU4F3Q15319 338 aa14.23□□□□□ -0.13
PTPRF-201ENST00000359947 OR52I1Q8NGK6 324 aa14.23□□□□□ -0.13
PTPRF-201ENST00000359947 ONECUT1Q9UBC0 465 aa14.23□□□□□ -0.13
PTPRF-201ENST00000359947 CLDN24A6NM45 220 aa14.23□□□□□ -0.13
PTPRF-201ENST00000359947 SHISA8B8ZZ34 492 aa14.23□□□□□ -0.13
PTPRF-201ENST00000359947 RETREG3Q86VR2 466 aa14.23□□□□□ -0.13
PTPRF-201ENST00000359947 ZNF346Q9UL40 294 aaKnown RBP14.23□□□□□ -0.13
PTPRF-201ENST00000359947 NDRG4Q9ULP0 352 aaKnown RBP14.23□□□□□ -0.13
PTPRF-201ENST00000359947 LGI1O95970 557 aa14.23□□□□□ -0.13
PTPRF-201ENST00000359947 SNRNP70P08621 437 aaKnown RBP14.23□□□□□ -0.13
PTPRF-201ENST00000359947 TRIP6Q15654 476 aaKnown RBP14.23□□□□□ -0.13
PTPRF-201ENST00000359947 ZNF74Q16587 644 aa14.23□□□□□ -0.13
PTPRF-201ENST00000359947 GCNT2Q8N0V5 402 aa14.23□□□□□ -0.13
PTPRF-201ENST00000359947 RDH5Q92781 318 aa14.23□□□□□ -0.13
PTPRF-201ENST00000359947 SAMD10Q9BYL1 202 aa14.23□□□□□ -0.13
PTPRF-201ENST00000359947 WSB2Q9NYS7 404 aaPredicted RBP14.23□□□□□ -0.13
PTPRF-201ENST00000359947 MEIKINA0A087WXM9 373 aa14.23□□□□□ -0.13
PTPRF-201ENST00000359947 H0YIG0 161 aa14.23□□□□□ -0.13
PTPRF-201ENST00000359947 TNFSF8P32971 234 aa14.23□□□□□ -0.13
PTPRF-201ENST00000359947 ARR3P36575 388 aa14.23□□□□□ -0.13
PTPRF-201ENST00000359947 INSM1Q01101 510 aaPredicted RBP14.23□□□□□ -0.13
PTPRF-201ENST00000359947 CMIPQ8IY22 773 aa14.23□□□□□ -0.13
PTPRF-201ENST00000359947 OR51D1Q8NGF3 324 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms