RNA–Protein interactions for RNA: ENST00000640499.1

VEGFA-231, Transcript of vascular endothelial growth factor A, human

APPRIS P3 TSL 1 (best) BASIC

Gene VEGFA, Length 1,188 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VEGFA-231	ENST00000640499	MEIS3	Q99687	375 aa		33.61	■■■□□ 2.97
VEGFA-231	ENST00000640499	IGHMBP2	P38935	993 aa	Known RBP	33.6	■■■□□ 2.97
VEGFA-231	ENST00000640499	KIAA2012	Q0VF49	1180 aa		33.6	■■■□□ 2.97
VEGFA-231	ENST00000640499	KIF3C	O14782	793 aa		33.59	■■■□□ 2.97
VEGFA-231	ENST00000640499	RLBP1	P12271	317 aa		33.59	■■■□□ 2.97
VEGFA-231	ENST00000640499	TMEM57	Q8N5G2	664 aa		33.59	■■■□□ 2.97
VEGFA-231	ENST00000640499	DDN	O94850	711 aa	Predicted RBP	33.58	■■■□□ 2.97
VEGFA-231	ENST00000640499	POTEC	B2RU33	542 aa		33.57	■■■□□ 2.96
VEGFA-231	ENST00000640499	C6orf229	H3BNL8	230 aa		33.57	■■■□□ 2.96
VEGFA-231	ENST00000640499	CCDC57	Q2TAC2	916 aa		33.57	■■■□□ 2.96
VEGFA-231	ENST00000640499	ANKIB1	Q9P2G1	1089 aa		33.57	■■■□□ 2.96
VEGFA-231	ENST00000640499	RCAN3	Q9UKA8	241 aa		33.57	■■■□□ 2.96
VEGFA-231	ENST00000640499	JDP2	Q8WYK2	163 aa		33.56	■■■□□ 2.96
VEGFA-231	ENST00000640499	XDH	P47989	1333 aa		33.55	■■■□□ 2.96
VEGFA-231	ENST00000640499	KDM2B	Q8NHM5	1336 aa		33.55	■■■□□ 2.96
VEGFA-231	ENST00000640499	UBTFL1	P0CB47	393 aa	Predicted RBP	33.55	■■■□□ 2.96
VEGFA-231	ENST00000640499	WASHC4	Q2M389	1173 aa		33.55	■■■□□ 2.96
VEGFA-231	ENST00000640499	MPHOSPH8	Q99549	860 aa		33.55	■■■□□ 2.96
VEGFA-231	ENST00000640499	RRAGC	Q9HB90	399 aa		33.55	■■■□□ 2.96
VEGFA-231	ENST00000640499	GGA1	Q9UJY5	639 aa		33.55	■■■□□ 2.96
VEGFA-231	ENST00000640499	RIMBP2	O15034	1052 aa		33.54	■■■□□ 2.96
VEGFA-231	ENST00000640499	UFL1	O94874	794 aa		33.54	■■■□□ 2.96
VEGFA-231	ENST00000640499	DPY19L2	Q6NUT2	758 aa		33.53	■■■□□ 2.96
VEGFA-231	ENST00000640499	NIM1K	Q8IY84	436 aa		33.53	■■■□□ 2.96
VEGFA-231	ENST00000640499	LRRFIP2	Q9Y608	721 aa	Known RBP	33.53	■■■□□ 2.96
VEGFA-231	ENST00000640499	WDR90	Q96KV7	1748 aa		33.53	■■■□□ 2.96
VEGFA-231	ENST00000640499	YDJC	A8MPS7	323 aa		33.52	■■■□□ 2.96
VEGFA-231	ENST00000640499	RFX5	P48382	616 aa	Predicted RBP	33.52	■■■□□ 2.96
VEGFA-231	ENST00000640499	CHRND	Q07001	517 aa		33.52	■■■□□ 2.96
VEGFA-231	ENST00000640499	DZIP1L	Q8IYY4	767 aa	Known RBP	33.52	■■■□□ 2.96
VEGFA-231	ENST00000640499	PUS3	Q9BZE2	481 aa	Known RBP	33.52	■■■□□ 2.96
VEGFA-231	ENST00000640499		A0A1B0GUL6	1792 aa		33.52	■■■□□ 2.96
VEGFA-231	ENST00000640499	ATP2B4	P23634	1241 aa		33.51	■■■□□ 2.95
VEGFA-231	ENST00000640499	ZNRF3	Q9ULT6	936 aa		33.51	■■■□□ 2.95
VEGFA-231	ENST00000640499	KLHDC4	Q8TBB5	520 aa		33.5	■■■□□ 2.95
VEGFA-231	ENST00000640499	LDHAL6A	Q6ZMR3	332 aa		33.49	■■■□□ 2.95
VEGFA-231	ENST00000640499	HELB	Q8NG08	1087 aa	Predicted RBP	33.49	■■■□□ 2.95
VEGFA-231	ENST00000640499	EYA3	Q99504	573 aa		33.49	■■■□□ 2.95
VEGFA-231	ENST00000640499	SNAP23	O00161	211 aa		33.48	■■■□□ 2.95
VEGFA-231	ENST00000640499	CXCL9	Q07325	125 aa		33.48	■■■□□ 2.95
VEGFA-231	ENST00000640499	PANK1	Q8TE04	598 aa		33.48	■■■□□ 2.95
VEGFA-231	ENST00000640499	ANKRD2	Q9GZV1	360 aa		33.48	■■■□□ 2.95
VEGFA-231	ENST00000640499	DBNDD1	Q9H9R9	158 aa		33.48	■■■□□ 2.95
VEGFA-231	ENST00000640499	RIPOR2	Q9Y4F9	1068 aa		33.48	■■■□□ 2.95
VEGFA-231	ENST00000640499	PLIN1	O60240	522 aa		33.47	■■■□□ 2.95
VEGFA-231	ENST00000640499	TAF5L	O75529	589 aa		33.47	■■■□□ 2.95
VEGFA-231	ENST00000640499	GNAI3	P08754	354 aa		33.47	■■■□□ 2.95
VEGFA-231	ENST00000640499	DOK7	Q18PE1	504 aa		33.47	■■■□□ 2.95
VEGFA-231	ENST00000640499	TAF7L	Q5H9L4	462 aa		33.47	■■■□□ 2.95
VEGFA-231	ENST00000640499	L3MBTL3	Q96JM7	780 aa	Predicted RBP	33.47	■■■□□ 2.95
VEGFA-231	ENST00000640499	ZC3H12C	Q9C0D7	883 aa	Known RBP	33.47	■■■□□ 2.95
VEGFA-231	ENST00000640499	KLRK1	P26718	216 aa		33.46	■■■□□ 2.95
VEGFA-231	ENST00000640499	EIF6	P56537	245 aa	Known RBP	33.46	■■■□□ 2.95
VEGFA-231	ENST00000640499	TXNRD3	Q86VQ6	643 aa		33.46	■■■□□ 2.95
VEGFA-231	ENST00000640499	GPC2	Q8N158	579 aa		33.46	■■■□□ 2.95
VEGFA-231	ENST00000640499	KCNQ5	Q9NR82	932 aa		33.46	■■■□□ 2.95
VEGFA-231	ENST00000640499	LEMD3	Q9Y2U8	911 aa		33.46	■■■□□ 2.95
VEGFA-231	ENST00000640499	IRS2	Q9Y4H2	1338 aa		33.46	■■■□□ 2.95
VEGFA-231	ENST00000640499	LRRC24	Q50LG9	513 aa		33.45	■■■□□ 2.95
VEGFA-231	ENST00000640499	FTSJ3	Q8IY81	847 aa	Known RBP	33.45	■■■□□ 2.95
VEGFA-231	ENST00000640499	ZBTB7B	O15156	539 aa	Predicted RBP	33.44	■■■□□ 2.94
VEGFA-231	ENST00000640499	PTPN12	Q05209	780 aa	Known RBP	33.44	■■■□□ 2.94
VEGFA-231	ENST00000640499	CNNM1	Q9NRU3	951 aa		33.44	■■■□□ 2.94
VEGFA-231	ENST00000640499	ZNF804B	A4D1E1	1349 aa		33.44	■■■□□ 2.94
VEGFA-231	ENST00000640499	VEGFA	P15692	232 aa	Predicted RBP	33.43	■■■□□ 2.94
VEGFA-231	ENST00000640499	GJA3	Q9Y6H8	435 aa		33.43	■■■□□ 2.94
VEGFA-231	ENST00000640499	SCN9A	Q15858	1988 aa		33.43	■■■□□ 2.94
VEGFA-231	ENST00000640499	ECE2	O60344	883 aa		33.42	■■■□□ 2.94
VEGFA-231	ENST00000640499	RAD17	O75943	681 aa		33.42	■■■□□ 2.94
VEGFA-231	ENST00000640499	HDAC5	Q9UQL6	1122 aa		33.42	■■■□□ 2.94
VEGFA-231	ENST00000640499	MED23	Q9ULK4	1368 aa		33.42	■■■□□ 2.94
VEGFA-231	ENST00000640499	ITPRIP	Q8IWB1	547 aa		33.4	■■■□□ 2.94
VEGFA-231	ENST00000640499	GNAI2	P04899	355 aa		33.39	■■■□□ 2.94
VEGFA-231	ENST00000640499	MTX1	Q13505	466 aa		33.39	■■■□□ 2.94
VEGFA-231	ENST00000640499	SCNN1D	P51172	638 aa		33.38	■■■□□ 2.93
VEGFA-231	ENST00000640499	CIAPIN1	Q6FI81	312 aa		33.38	■■■□□ 2.93
VEGFA-231	ENST00000640499	SCN4A	P35499	1836 aa		33.37	■■■□□ 2.93
VEGFA-231	ENST00000640499	C20orf194	Q5TEA3	1177 aa		33.37	■■■□□ 2.93
VEGFA-231	ENST00000640499	ATG9A	Q7Z3C6	839 aa		33.37	■■■□□ 2.93
VEGFA-231	ENST00000640499	VGLL2	Q8N8G2	317 aa		33.37	■■■□□ 2.93
VEGFA-231	ENST00000640499	C15orf52	Q6ZUT6	534 aa	Known RBP	33.36	■■■□□ 2.93
VEGFA-231	ENST00000640499	PA2G4	Q9UQ80	394 aa	Known RBP	33.36	■■■□□ 2.93
VEGFA-231	ENST00000640499	MROH5	Q6ZUA9	1318 aa		33.35	■■■□□ 2.93
VEGFA-231	ENST00000640499	EYA2	O00167	538 aa		33.35	■■■□□ 2.93
VEGFA-231	ENST00000640499	PSMD14	O00487	310 aa		33.35	■■■□□ 2.93
VEGFA-231	ENST00000640499	C1QTNF8	P60827	252 aa		33.35	■■■□□ 2.93
VEGFA-231	ENST00000640499	TAF1D	Q9H5J8	278 aa	Predicted RBP	33.35	■■■□□ 2.93
VEGFA-231	ENST00000640499	TOMM70	O94826	608 aa		33.34	■■■□□ 2.93
VEGFA-231	ENST00000640499	C1orf115	Q9H7X2	142 aa		33.34	■■■□□ 2.93
VEGFA-231	ENST00000640499	PNMA6E	A0A0J9YXQ4	647 aa		33.33	■■■□□ 2.93
VEGFA-231	ENST00000640499	KCNJ4	P48050	445 aa		33.33	■■■□□ 2.93
VEGFA-231	ENST00000640499	TNIP1	Q15025	636 aa		33.33	■■■□□ 2.93
VEGFA-231	ENST00000640499	COPRS	Q9NQ92	184 aa		33.33	■■■□□ 2.93
VEGFA-231	ENST00000640499	SRGAP3	O43295	1099 aa		33.32	■■■□□ 2.92
VEGFA-231	ENST00000640499	POTEI	P0CG38	1075 aa		33.32	■■■□□ 2.92
VEGFA-231	ENST00000640499	POTEJ	P0CG39	1038 aa		33.32	■■■□□ 2.92
VEGFA-231	ENST00000640499	EPS15	P42566	896 aa		33.32	■■■□□ 2.92
VEGFA-231	ENST00000640499	GMPS	P49915	693 aa	Predicted RBP	33.32	■■■□□ 2.92
VEGFA-231	ENST00000640499	HACL1	Q9UJ83	578 aa		33.32	■■■□□ 2.92
VEGFA-231	ENST00000640499	COG6	Q9Y2V7	657 aa		33.32	■■■□□ 2.92

Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms