RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 PRM3Q9NNZ6 103 aa1.93□□□□□ -2.1
VPS35-212ENST00000640313 PAK6Q9NQU5 681 aaPredicted RBP1.93□□□□□ -2.1
VPS35-212ENST00000640313 BSDC1Q9NW68 430 aaPredicted RBP1.93□□□□□ -2.1
VPS35-212ENST00000640313 TLR7Q9NYK1 1049 aaKnown RBP1.93□□□□□ -2.1
VPS35-212ENST00000640313 TBC1D2BQ9UPU7 963 aa1.93□□□□□ -2.1
VPS35-212ENST00000640313 BCS1LQ9Y276 419 aa1.93□□□□□ -2.1
VPS35-212ENST00000640313 J3QW42 95 aa1.92□□□□□ -2.1
VPS35-212ENST00000640313 C21orf2O43822 256 aa1.92□□□□□ -2.1
VPS35-212ENST00000640313 PPP1R12BO60237 982 aaPredicted RBP1.92□□□□□ -2.1
VPS35-212ENST00000640313 SASH3O75995 380 aa1.92□□□□□ -2.1
VPS35-212ENST00000640313 EGFRP00533 1210 aa1.92□□□□□ -2.1
VPS35-212ENST00000640313 F13BP05160 661 aa1.92□□□□□ -2.1
VPS35-212ENST00000640313 BUD31P41223 144 aaPredicted RBP1.92□□□□□ -2.1
VPS35-212ENST00000640313 PSME1Q06323 249 aa1.92□□□□□ -2.1
VPS35-212ENST00000640313 VAC14Q08AM6 782 aa1.92□□□□□ -2.1
VPS35-212ENST00000640313 SEMA3FQ13275 785 aa1.92□□□□□ -2.1
VPS35-212ENST00000640313 RTN1Q16799 776 aa1.92□□□□□ -2.1
VPS35-212ENST00000640313 DUOXA2Q1HG44 320 aa1.92□□□□□ -2.1
VPS35-212ENST00000640313 ANKRD34AQ69YU3 496 aa1.92□□□□□ -2.1
VPS35-212ENST00000640313 KRT25Q7Z3Z0 450 aa1.92□□□□□ -2.1
VPS35-212ENST00000640313 SIAH1Q8IUQ4 282 aa1.92□□□□□ -2.1
VPS35-212ENST00000640313 KSR1Q8IVT5 923 aa1.92□□□□□ -2.1
VPS35-212ENST00000640313 KLHL23Q8NBE8 558 aa1.92□□□□□ -2.1
VPS35-212ENST00000640313 NFATC2IPQ8NCF5 419 aa1.92□□□□□ -2.1
VPS35-212ENST00000640313 TMEM40Q8WWA1 233 aa1.92□□□□□ -2.1
VPS35-212ENST00000640313 MFSD14AQ96MC6 490 aa1.92□□□□□ -2.1
VPS35-212ENST00000640313 SLC38A3Q99624 504 aa1.92□□□□□ -2.1
VPS35-212ENST00000640313 C2orf49Q9BVC5 232 aaPredicted RBP1.92□□□□□ -2.1
VPS35-212ENST00000640313 KCNF1Q9H3M0 494 aa1.92□□□□□ -2.1
VPS35-212ENST00000640313 KCNK4Q9NYG8 393 aa1.92□□□□□ -2.1
VPS35-212ENST00000640313 LINC01387J3KSC0 135 aa1.91□□□□□ -2.1
VPS35-212ENST00000640313 PIK3CDO00329 1044 aa1.91□□□□□ -2.1
VPS35-212ENST00000640313 SART1O43290 800 aaKnown RBP1.91□□□□□ -2.1
VPS35-212ENST00000640313 GHRHP01286 108 aa1.91□□□□□ -2.1
VPS35-212ENST00000640313 PSAPP07602 524 aa1.91□□□□□ -2.1
VPS35-212ENST00000640313 SOX18P35713 384 aa1.91□□□□□ -2.1
VPS35-212ENST00000640313 IDH3AP50213 366 aa1.91□□□□□ -2.1
VPS35-212ENST00000640313 MESP2Q0VG99 397 aa1.91□□□□□ -2.1
VPS35-212ENST00000640313 WASHC4Q2M389 1173 aa1.91□□□□□ -2.1
VPS35-212ENST00000640313 ATG4DQ86TL0 474 aaPredicted RBP1.91□□□□□ -2.1
VPS35-212ENST00000640313 TRIM50Q86XT4 487 aa1.91□□□□□ -2.1
VPS35-212ENST00000640313 COL26A1Q96A83 441 aa1.91□□□□□ -2.1
VPS35-212ENST00000640313 TOX2Q96NM4 488 aa1.91□□□□□ -2.1
VPS35-212ENST00000640313 METTL22Q9BUU2 404 aaPredicted RBP1.91□□□□□ -2.1
VPS35-212ENST00000640313 OSBPL1AQ9BXW6 950 aa1.91□□□□□ -2.1
VPS35-212ENST00000640313 RBSNQ9H1K0 784 aa1.91□□□□□ -2.1
VPS35-212ENST00000640313 JAG2Q9Y219 1238 aa1.91□□□□□ -2.1
VPS35-212ENST00000640313 ATAD2Q6PL18 1390 aa1.9□□□□□ -2.11
VPS35-212ENST00000640313 MEGF11A6BM72 1044 aa1.9□□□□□ -2.11
VPS35-212ENST00000640313 FSCN2O14926 492 aa1.9□□□□□ -2.11
VPS35-212ENST00000640313 CYP26A1O43174 497 aa1.9□□□□□ -2.11
VPS35-212ENST00000640313 SKIP12755 728 aa1.9□□□□□ -2.11
VPS35-212ENST00000640313 MAP4P27816 1152 aaKnown RBP1.9□□□□□ -2.11
VPS35-212ENST00000640313 CFPP27918 469 aa1.9□□□□□ -2.11
VPS35-212ENST00000640313 PREPP48147 710 aa1.9□□□□□ -2.11
VPS35-212ENST00000640313 ATP1A2P50993 1020 aa1.9□□□□□ -2.11
VPS35-212ENST00000640313 ARSDP51689 593 aa1.9□□□□□ -2.11
VPS35-212ENST00000640313 NCOA4Q13772 614 aa1.9□□□□□ -2.11
VPS35-212ENST00000640313 TMEM132AQ24JP5 1023 aa1.9□□□□□ -2.11
VPS35-212ENST00000640313 CCDC102BQ68D86 513 aa1.9□□□□□ -2.11
VPS35-212ENST00000640313 TTLL10Q6ZVT0 673 aa1.9□□□□□ -2.11
VPS35-212ENST00000640313 C1QL4Q86Z23 238 aa1.9□□□□□ -2.11
VPS35-212ENST00000640313 FLCNQ8NFG4 579 aa1.9□□□□□ -2.11
VPS35-212ENST00000640313 TPCN2Q8NHX9 752 aa1.9□□□□□ -2.11
VPS35-212ENST00000640313 ZSCAN18Q8TBC5 510 aaPredicted RBP1.9□□□□□ -2.11
VPS35-212ENST00000640313 FOXD4L4Q8WXT5 416 aaPredicted RBP1.9□□□□□ -2.11
VPS35-212ENST00000640313 FAM84AQ96KN4 292 aa1.9□□□□□ -2.11
VPS35-212ENST00000640313 RNF208Q9H0X6 261 aa1.9□□□□□ -2.11
VPS35-212ENST00000640313 TRIM33Q9UPN9 1127 aa1.9□□□□□ -2.11
VPS35-212ENST00000640313 OPLAHO14841 1288 aa1.89□□□□□ -2.11
VPS35-212ENST00000640313 MMP20O60882 483 aa1.89□□□□□ -2.11
VPS35-212ENST00000640313 ADAM11O75078 769 aa1.89□□□□□ -2.11
VPS35-212ENST00000640313 MICAL2O94851 1124 aa1.89□□□□□ -2.11
VPS35-212ENST00000640313 CDC27P30260 824 aa1.89□□□□□ -2.11
VPS35-212ENST00000640313 ZNF792Q3KQV3 632 aa1.89□□□□□ -2.11
VPS35-212ENST00000640313 FAM117BQ6P1L5 589 aa1.89□□□□□ -2.11
VPS35-212ENST00000640313 LCNL1Q6ZST4 164 aa1.89□□□□□ -2.11
VPS35-212ENST00000640313 SHISA5Q8N114 240 aa1.89□□□□□ -2.11
VPS35-212ENST00000640313 LARGE2Q8N3Y3 721 aa1.89□□□□□ -2.11
VPS35-212ENST00000640313 FBXL6Q8N531 539 aa1.89□□□□□ -2.11
VPS35-212ENST00000640313 GLIS3Q8NEA6 775 aa1.89□□□□□ -2.11
VPS35-212ENST00000640313 FAM168AQ92567 244 aa1.89□□□□□ -2.11
VPS35-212ENST00000640313 NGLY1Q96IV0 654 aa1.89□□□□□ -2.11
VPS35-212ENST00000640313 ADAM19Q9H013 955 aa1.89□□□□□ -2.11
VPS35-212ENST00000640313 KIAA1024Q9UPX6 916 aa1.89□□□□□ -2.11
VPS35-212ENST00000640313 FAM95CA0A1B0GW59 222 aa1.88□□□□□ -2.11
VPS35-212ENST00000640313 PALM3A6NDB9 673 aaPredicted RBP1.88□□□□□ -2.11
VPS35-212ENST00000640313 DDX3YO15523 660 aaKnown RBP1.88□□□□□ -2.11
VPS35-212ENST00000640313 XYLBO75191 536 aa1.88□□□□□ -2.11
VPS35-212ENST00000640313 DKK1O94907 266 aa1.88□□□□□ -2.11
VPS35-212ENST00000640313 RAP1GAPP47736 663 aa1.88□□□□□ -2.11
VPS35-212ENST00000640313 CLDN10P78369 228 aa1.88□□□□□ -2.11
VPS35-212ENST00000640313 CRTC2Q53ET0 693 aaPredicted RBP1.88□□□□□ -2.11
VPS35-212ENST00000640313 SGO2Q562F6 1265 aa1.88□□□□□ -2.11
VPS35-212ENST00000640313 FDX2Q6P4F2 183 aa1.88□□□□□ -2.11
VPS35-212ENST00000640313 TXNDC11Q6PKC3 985 aa1.88□□□□□ -2.11
VPS35-212ENST00000640313 PAOXQ6QHF9 649 aa1.88□□□□□ -2.11
VPS35-212ENST00000640313 ZAR1Q86SH2 424 aa1.88□□□□□ -2.11
VPS35-212ENST00000640313 AMIGO3Q86WK7 504 aa1.88□□□□□ -2.11
VPS35-212ENST00000640313 WFDC3Q8IUB2 231 aa1.88□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms