RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 RABL6Q3YEC7 729 aaPredicted RBP15.29■□□□□ 0.04
CCDC88A-214ENST00000621814 LEO1Q8WVC0 666 aaPredicted RBP15.29■□□□□ 0.04
CCDC88A-214ENST00000621814 GTF3C6Q969F1 213 aa15.29■□□□□ 0.04
CCDC88A-214ENST00000621814 NR1I2O75469 434 aa15.28■□□□□ 0.04
CCDC88A-214ENST00000621814 IFIT1P09914 478 aaKnown RBP15.28■□□□□ 0.04
CCDC88A-214ENST00000621814 DRC7Q8IY82 874 aa15.28■□□□□ 0.04
CCDC88A-214ENST00000621814 KBTBD3Q8NAB2 608 aa15.28■□□□□ 0.04
CCDC88A-214ENST00000621814 FBXW7Q969H0 707 aa15.28■□□□□ 0.04
CCDC88A-214ENST00000621814 FUCA2Q9BTY2 467 aa15.28■□□□□ 0.04
CCDC88A-214ENST00000621814 HSPA2P54652 639 aa15.28■□□□□ 0.04
CCDC88A-214ENST00000621814 HAND2P61296 217 aa15.28■□□□□ 0.04
CCDC88A-214ENST00000621814 TTLL5Q6EMB2 1281 aa15.28■□□□□ 0.04
CCDC88A-214ENST00000621814 RAB11FIP4Q86YS3 637 aa15.28■□□□□ 0.04
CCDC88A-214ENST00000621814 ZCRB1Q8TBF4 217 aaKnown RBP15.28■□□□□ 0.04
CCDC88A-214ENST00000621814 SCAND2PQ9GZW5 306 aaPredicted RBP15.28■□□□□ 0.04
CCDC88A-214ENST00000621814 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.28■□□□□ 0.043e-7■■■■□ 21.9
CCDC88A-214ENST00000621814 ATG9AQ7Z3C6 839 aa15.28■□□□□ 0.04
CCDC88A-214ENST00000621814 TYRO3Q06418 890 aa15.27■□□□□ 0.04
CCDC88A-214ENST00000621814 NOLC1Q14978 699 aaKnown RBP eCLIP15.27■□□□□ 0.04
CCDC88A-214ENST00000621814 WASHC4Q2M389 1173 aa15.27■□□□□ 0.04
CCDC88A-214ENST00000621814 ANO6Q4KMQ2 910 aa15.27■□□□□ 0.04
CCDC88A-214ENST00000621814 TSC1Q92574 1164 aa15.27■□□□□ 0.04
CCDC88A-214ENST00000621814 A0A1B0GUL7 405 aa15.27■□□□□ 0.03
CCDC88A-214ENST00000621814 FAM177BA6PVY3 158 aa15.27■□□□□ 0.03
CCDC88A-214ENST00000621814 CASP7P55210 303 aa15.27■□□□□ 0.03
CCDC88A-214ENST00000621814 USPL1Q5W0Q7 1092 aa15.27■□□□□ 0.03
CCDC88A-214ENST00000621814 PGBD1Q96JS3 809 aa15.26■□□□□ 0.03
CCDC88A-214ENST00000621814 MRVI1Q9Y6F6 885 aa15.26■□□□□ 0.03
CCDC88A-214ENST00000621814 A0A087WWV3 80 aa15.25■□□□□ 0.03
CCDC88A-214ENST00000621814 H7C1W4 665 aa15.25■□□□□ 0.03
CCDC88A-214ENST00000621814 TAF7LQ5H9L4 462 aa15.25■□□□□ 0.03
CCDC88A-214ENST00000621814 FAM89AQ96GI7 184 aa15.25■□□□□ 0.03
CCDC88A-214ENST00000621814 C5P01031 1676 aa15.25■□□□□ 0.03
CCDC88A-214ENST00000621814 TSGA10IPQ3SY00 556 aa15.25■□□□□ 0.03
CCDC88A-214ENST00000621814 GPHNQ9NQX3 736 aaPredicted RBP15.25■□□□□ 0.03
CCDC88A-214ENST00000621814 DHX32Q7L7V1 743 aaKnown RBP15.25■□□□□ 0.03
CCDC88A-214ENST00000621814 CRYBG1Q9Y4K1 1723 aa15.24■□□□□ 0.03
CCDC88A-214ENST00000621814 HSPD1P10809 573 aaKnown RBP15.24■□□□□ 0.03
CCDC88A-214ENST00000621814 EVA1CP58658 441 aa15.24■□□□□ 0.03
CCDC88A-214ENST00000621814 CCDC57Q2TAC2 916 aa15.24■□□□□ 0.03
CCDC88A-214ENST00000621814 SASS6Q6UVJ0 657 aa15.24■□□□□ 0.03
CCDC88A-214ENST00000621814 CADPS2Q86UW7 1296 aa15.24■□□□□ 0.03
CCDC88A-214ENST00000621814 ERCC4Q92889 916 aaPredicted RBP15.24■□□□□ 0.03
CCDC88A-214ENST00000621814 DNAJC25Q9H1X3 360 aa15.24■□□□□ 0.03
CCDC88A-214ENST00000621814 PTPDC1A2A3K4 754 aa15.24■□□□□ 0.03
CCDC88A-214ENST00000621814 EYA2O00167 538 aa15.24■□□□□ 0.03
CCDC88A-214ENST00000621814 ADORA1P30542 326 aa15.24■□□□□ 0.03
CCDC88A-214ENST00000621814 SYNE4Q8N205 404 aa15.24■□□□□ 0.03
CCDC88A-214ENST00000621814 FAM200AQ8TCP9 573 aa15.24■□□□□ 0.03
CCDC88A-214ENST00000621814 CEP126Q9P2H0 1117 aa15.24■□□□□ 0.03
CCDC88A-214ENST00000621814 IL15P40933 162 aaPredicted RBP15.23■□□□□ 0.03
CCDC88A-214ENST00000621814 PI16Q6UXB8 463 aa15.23■□□□□ 0.03
CCDC88A-214ENST00000621814 PIBF1Q8WXW3 757 aa15.23■□□□□ 0.03
CCDC88A-214ENST00000621814 TRIM5Q9C035 493 aa15.23■□□□□ 0.03
CCDC88A-214ENST00000621814 E7EWF7 191 aa15.23■□□□□ 0.03
CCDC88A-214ENST00000621814 M0R2C6 588 aa15.23■□□□□ 0.03
CCDC88A-214ENST00000621814 OTUD7BQ6GQQ9 843 aa15.23■□□□□ 0.03
CCDC88A-214ENST00000621814 UBE2Q2Q8WVN8 375 aa15.23■□□□□ 0.03
CCDC88A-214ENST00000621814 CBX8Q9HC52 389 aa15.23■□□□□ 0.03
CCDC88A-214ENST00000621814 A0A0G2JS52 829 aa15.23■□□□□ 0.03
CCDC88A-214ENST00000621814 PTGS1P23219 599 aa15.23■□□□□ 0.03
CCDC88A-214ENST00000621814 GPTP24298 496 aa15.23■□□□□ 0.03
CCDC88A-214ENST00000621814 TTC39AQ5SRH9 613 aa15.23■□□□□ 0.03
CCDC88A-214ENST00000621814 PHRF1Q9P1Y6 1649 aaKnown RBP15.23■□□□□ 0.03
CCDC88A-214ENST00000621814 PYCARDQ9ULZ3 195 aa15.23■□□□□ 0.03
CCDC88A-214ENST00000621814 RESTQ13127 1097 aa15.22■□□□□ 0.03
CCDC88A-214ENST00000621814 VSIG10Q8N0Z9 540 aa15.22■□□□□ 0.03
CCDC88A-214ENST00000621814 MST1RQ04912 1400 aa15.22■□□□□ 0.03
CCDC88A-214ENST00000621814 MAST3O60307 1309 aa15.22■□□□□ 0.03
CCDC88A-214ENST00000621814 ELP1O95163 1332 aa15.22■□□□□ 0.03
CCDC88A-214ENST00000621814 SPATA31A3Q5VYP0 1347 aa15.22■□□□□ 0.03
CCDC88A-214ENST00000621814 BCL11BQ9C0K0 894 aaPredicted RBP15.22■□□□□ 0.03
CCDC88A-214ENST00000621814 ALDH8A1Q9H2A2 487 aaPredicted RBP15.22■□□□□ 0.03
CCDC88A-214ENST00000621814 RNF113AO15541 343 aaKnown RBP15.21■□□□□ 0.03
CCDC88A-214ENST00000621814 GLIPR1L2Q4G1C9 344 aa15.21■□□□□ 0.03
CCDC88A-214ENST00000621814 OSBP2Q969R2 916 aa15.21■□□□□ 0.03
CCDC88A-214ENST00000621814 NRBP1Q9UHY1 535 aa15.21■□□□□ 0.03
CCDC88A-214ENST00000621814 PCDH11XQ9BZA7 1347 aa15.21■□□□□ 0.03
CCDC88A-214ENST00000621814 PCDH11YQ9BZA8 1340 aa15.21■□□□□ 0.03
CCDC88A-214ENST00000621814 CTDNEP1O95476 244 aa15.21■□□□□ 0.03
CCDC88A-214ENST00000621814 ZNF165P49910 485 aa15.21■□□□□ 0.03
CCDC88A-214ENST00000621814 CCDC158Q5M9N0 1113 aa15.21■□□□□ 0.03
CCDC88A-214ENST00000621814 NSUN7Q8NE18 718 aaKnown RBP15.21■□□□□ 0.03
CCDC88A-214ENST00000621814 KCNF1Q9H3M0 494 aa15.21■□□□□ 0.03
CCDC88A-214ENST00000621814 HELLSQ9NRZ9 838 aa15.21■□□□□ 0.03
CCDC88A-214ENST00000621814 CFAP45Q9UL16 551 aa15.21■□□□□ 0.03
CCDC88A-214ENST00000621814 ME1P48163 572 aa15.2■□□□□ 0.02
CCDC88A-214ENST00000621814 DDX19AQ9NUU7 478 aaKnown RBP15.2■□□□□ 0.02
CCDC88A-214ENST00000621814 TRPM3Q9HCF6 1732 aaPredicted RBP15.2■□□□□ 0.02
CCDC88A-214ENST00000621814 ZMYM1Q5SVZ6 1142 aa15.2■□□□□ 0.02
CCDC88A-214ENST00000621814 CCDC186Q7Z3E2 898 aa15.2■□□□□ 0.02
CCDC88A-214ENST00000621814 CCAR1Q8IX12 1150 aaKnown RBP15.2■□□□□ 0.02
CCDC88A-214ENST00000621814 CCDC191Q8NCU4 936 aa15.2■□□□□ 0.02
CCDC88A-214ENST00000621814 CLSTN2Q9H4D0 955 aa15.2■□□□□ 0.02
CCDC88A-214ENST00000621814 SH3TC1Q8TE82 1336 aa15.2■□□□□ 0.02
CCDC88A-214ENST00000621814 PFKFB2O60825 505 aa15.2■□□□□ 0.02
CCDC88A-214ENST00000621814 POLR3DP05423 398 aaPredicted RBP15.2■□□□□ 0.02
CCDC88A-214ENST00000621814 HMGB1P09429 215 aaKnown RBP15.2■□□□□ 0.02
CCDC88A-214ENST00000621814 SCARF1Q14162 830 aa15.2■□□□□ 0.02
CCDC88A-214ENST00000621814 XAGE2Q96GT9 111 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms