RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 CNTNAP1P78357 1384 aa24.33■■□□□ 1.49
CCDC28A-203ENST00000617445 H7C1D1 291 aa24.33■■□□□ 1.49
CCDC28A-203ENST00000617445 ZC3H15Q8WU90 426 aaKnown RBP24.33■■□□□ 1.49
CCDC28A-203ENST00000617445 PLA2G12BQ9BX93 195 aa24.33■■□□□ 1.49
CCDC28A-203ENST00000617445 DBNDD1Q9H9R9 158 aa24.33■■□□□ 1.49
CCDC28A-203ENST00000617445 XDHP47989 1333 aa24.33■■□□□ 1.48
CCDC28A-203ENST00000617445 ECE2O60344 883 aa24.32■■□□□ 1.48
CCDC28A-203ENST00000617445 UFL1O94874 794 aa24.32■■□□□ 1.48
CCDC28A-203ENST00000617445 RPS12P25398 132 aaKnown RBP24.32■■□□□ 1.48
CCDC28A-203ENST00000617445 UBE3BQ7Z3V4 1068 aa24.32■■□□□ 1.48
CCDC28A-203ENST00000617445 CCDC85AQ96PX6 553 aaPredicted RBP24.32■■□□□ 1.48
CCDC28A-203ENST00000617445 SPINK5Q9NQ38 1064 aaPredicted RBP24.32■■□□□ 1.48
CCDC28A-203ENST00000617445 BSDC1Q9NW68 430 aaPredicted RBP24.32■■□□□ 1.48
CCDC28A-203ENST00000617445 MKRN1Q9UHC7 482 aaKnown RBP24.32■■□□□ 1.48
CCDC28A-203ENST00000617445 PGAP2Q9UHJ9 254 aa24.32■■□□□ 1.48
CCDC28A-203ENST00000617445 CNOT7Q9UIV1 285 aaKnown RBP24.32■■□□□ 1.48
CCDC28A-203ENST00000617445 G3V3G9 751 aa24.31■■□□□ 1.48
CCDC28A-203ENST00000617445 DCAF8Q5TAQ9 597 aa24.31■■□□□ 1.48
CCDC28A-203ENST00000617445 IFFO2Q5TF58 517 aa24.31■■□□□ 1.48
CCDC28A-203ENST00000617445 PSMD14O00487 310 aa24.3■■□□□ 1.48
CCDC28A-203ENST00000617445 ATP2B4P23634 1241 aa24.3■■□□□ 1.48
CCDC28A-203ENST00000617445 DOK7Q18PE1 504 aa24.29■■□□□ 1.48
CCDC28A-203ENST00000617445 GREM2Q9H772 168 aa24.29■■□□□ 1.48
CCDC28A-203ENST00000617445 TRPM7Q96QT4 1865 aa24.28■■□□□ 1.48
CCDC28A-203ENST00000617445 RASSF10A6NK89 507 aa24.28■■□□□ 1.48
CCDC28A-203ENST00000617445 ZNF521Q96K83 1311 aa24.28■■□□□ 1.48
CCDC28A-203ENST00000617445 CASP7P55210 303 aa24.27■■□□□ 1.48
CCDC28A-203ENST00000617445 DEFB115Q30KQ5 88 aa24.27■■□□□ 1.48
CCDC28A-203ENST00000617445 MICALL2Q8IY33 904 aa24.27■■□□□ 1.48
CCDC28A-203ENST00000617445 MINPP1Q9UNW1 487 aa24.27■■□□□ 1.48
CCDC28A-203ENST00000617445 CSF1RP07333 972 aa24.26■■□□□ 1.47
CCDC28A-203ENST00000617445 VIL1P09327 827 aaKnown RBP24.26■■□□□ 1.47
CCDC28A-203ENST00000617445 HSPA1AP0DMV8 641 aaKnown RBP24.26■■□□□ 1.47
CCDC28A-203ENST00000617445 HSPA1BP0DMV9 641 aaKnown RBP24.26■■□□□ 1.47
CCDC28A-203ENST00000617445 IGHMBP2P38935 993 aaKnown RBP24.26■■□□□ 1.47
CCDC28A-203ENST00000617445 ZBTB12Q9Y330 459 aaPredicted RBP24.26■■□□□ 1.47
CCDC28A-203ENST00000617445 GPR101Q96P66 508 aaPredicted RBP24.25■■□□□ 1.47
CCDC28A-203ENST00000617445 ABT1Q9ULW3 272 aaKnown RBP24.25■■□□□ 1.47
CCDC28A-203ENST00000617445 VEGFBP49765 207 aa24.24■■□□□ 1.47
CCDC28A-203ENST00000617445 HIRAP54198 1017 aaPredicted RBP24.24■■□□□ 1.47
CCDC28A-203ENST00000617445 BEND3Q5T5X7 828 aa24.24■■□□□ 1.47
CCDC28A-203ENST00000617445 CDC37L1Q7L3B6 337 aa24.24■■□□□ 1.47
CCDC28A-203ENST00000617445 PODNQ7Z5L7 613 aa24.24■■□□□ 1.47
CCDC28A-203ENST00000617445 ITGA6P23229 1130 aa24.23■■□□□ 1.47
CCDC28A-203ENST00000617445 TRPM4Q8TD43 1214 aa24.23■■□□□ 1.47
CCDC28A-203ENST00000617445 MPHOSPH8Q99549 860 aa24.23■■□□□ 1.47
CCDC28A-203ENST00000617445 ANKRD2Q9GZV1 360 aa24.23■■□□□ 1.47
CCDC28A-203ENST00000617445 KCNQ5Q9NR82 932 aa24.23■■□□□ 1.47
CCDC28A-203ENST00000617445 LEMD3Q9Y2U8 911 aa24.23■■□□□ 1.47
CCDC28A-203ENST00000617445 SCN9AQ15858 1988 aa24.23■■□□□ 1.47
CCDC28A-203ENST00000617445 ZNF609O15014 1411 aa24.22■■□□□ 1.47
CCDC28A-203ENST00000617445 F6X3S4 739 aa24.22■■□□□ 1.47
CCDC28A-203ENST00000617445 CCT4P50991 539 aaKnown RBP24.22■■□□□ 1.47
CCDC28A-203ENST00000617445 AGBL3Q8NEM8 1001 aa24.22■■□□□ 1.47
CCDC28A-203ENST00000617445 MED23Q9ULK4 1368 aa24.21■■□□□ 1.47
CCDC28A-203ENST00000617445 E9PSI1 815 aa24.21■■□□□ 1.47
CCDC28A-203ENST00000617445 TRAF5O00463 557 aa24.21■■□□□ 1.47
CCDC28A-203ENST00000617445 CST9Q5W186 159 aa24.21■■□□□ 1.47
CCDC28A-203ENST00000617445 PSME4Q14997 1843 aa24.21■■□□□ 1.47
CCDC28A-203ENST00000617445 SPEF2Q9C093 1822 aa24.2■■□□□ 1.46
CCDC28A-203ENST00000617445 SHTN1A0MZ66 631 aa24.2■■□□□ 1.46
CCDC28A-203ENST00000617445 ANKRD18BA2A2Z9 1011 aa24.2■■□□□ 1.46
CCDC28A-203ENST00000617445 ALDH1L1O75891 902 aa24.2■■□□□ 1.46
CCDC28A-203ENST00000617445 FAM161AQ3B820 660 aa24.2■■□□□ 1.46
CCDC28A-203ENST00000617445 SAMD7Q7Z3H4 446 aa24.2■■□□□ 1.46
CCDC28A-203ENST00000617445 ECE1P42892 770 aa24.19■■□□□ 1.46
CCDC28A-203ENST00000617445 RSBN1LQ6PCB5 846 aaPredicted RBP24.19■■□□□ 1.46
CCDC28A-203ENST00000617445 GLIS2Q9BZE0 524 aaPredicted RBP24.19■■□□□ 1.46
CCDC28A-203ENST00000617445 TLL2Q9Y6L7 1015 aa24.19■■□□□ 1.46
CCDC28A-203ENST00000617445 WDR33Q9C0J8 1336 aaKnown RBP24.18■■□□□ 1.46
CCDC28A-203ENST00000617445 USP17L3A6NCW0 530 aa24.18■■□□□ 1.46
CCDC28A-203ENST00000617445 USP17L4A6NCW7 530 aa24.18■■□□□ 1.46
CCDC28A-203ENST00000617445 GRM8O00222 908 aa24.18■■□□□ 1.46
CCDC28A-203ENST00000617445 FMR1Q06787 632 aaKnown RBP eCLIP24.18■■□□□ 1.46
CCDC28A-203ENST00000617445 TBC1D10BQ4KMP7 808 aaPredicted RBP24.18■■□□□ 1.46
CCDC28A-203ENST00000617445 USP17L1Q7RTZ2 530 aa24.18■■□□□ 1.46
CCDC28A-203ENST00000617445 COA1Q9GZY4 146 aa24.18■■□□□ 1.46
CCDC28A-203ENST00000617445 POLR2AP24928 1970 aaKnown RBP24.18■■□□□ 1.46
CCDC28A-203ENST00000617445 CELF2O95319 508 aaKnown RBP24.17■■□□□ 1.46
CCDC28A-203ENST00000617445 ZNF280AP59817 542 aaPredicted RBP24.17■■□□□ 1.46
CCDC28A-203ENST00000617445 FOXO4P98177 505 aa24.17■■□□□ 1.46
CCDC28A-203ENST00000617445 IFIT5Q13325 482 aaKnown RBP24.17■■□□□ 1.46
CCDC28A-203ENST00000617445 AIDAQ96BJ3 306 aa24.17■■□□□ 1.46
CCDC28A-203ENST00000617445 SRCIN1Q9C0H9 1055 aa24.17■■□□□ 1.46
CCDC28A-203ENST00000617445 C9orf78Q9NZ63 289 aaPredicted RBP24.17■■□□□ 1.46
CCDC28A-203ENST00000617445 CCER2I3L3R5 266 aa24.16■■□□□ 1.46
CCDC28A-203ENST00000617445 MAP2K1Q02750 393 aaPredicted RBP24.16■■□□□ 1.46
CCDC28A-203ENST00000617445 COL13A1Q5TAT6 717 aaPredicted RBP24.16■■□□□ 1.46
CCDC28A-203ENST00000617445 DCPSQ96C86 337 aaKnown RBP24.16■■□□□ 1.46
CCDC28A-203ENST00000617445 HHIPL1Q96JK4 782 aa24.16■■□□□ 1.46
CCDC28A-203ENST00000617445 ZNF804BA4D1E1 1349 aa24.15■■□□□ 1.46
CCDC28A-203ENST00000617445 MMP14P50281 582 aa24.15■■□□□ 1.46
CCDC28A-203ENST00000617445 KIF4BQ2VIQ3 1234 aa24.15■■□□□ 1.46
CCDC28A-203ENST00000617445 GMLQ99445 158 aa24.15■■□□□ 1.46
CCDC28A-203ENST00000617445 WBP1LQ9NX94 342 aa24.15■■□□□ 1.46
CCDC28A-203ENST00000617445 SLFN5Q08AF3 891 aa24.14■■□□□ 1.45
CCDC28A-203ENST00000617445 RBM26Q5T8P6 1007 aaKnown RBP24.14■■□□□ 1.45
CCDC28A-203ENST00000617445 SLC4A10Q6U841 1118 aa24.14■■□□□ 1.45
CCDC28A-203ENST00000617445 KRT26Q7Z3Y9 468 aa24.14■■□□□ 1.45
CCDC28A-203ENST00000617445 SAPCD2Q86UD0 394 aa24.14■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms