RNA–Protein interactions for RNA: ENST00000601444.2

SSBP4-210, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 5

Gene SSBP4, Length 427 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-210ENST00000601444 GPBP1L1Q9HC44 474 aaPredicted RBP25.22■■□□□ 1.63
SSBP4-210ENST00000601444 PODXL2Q9NZ53 605 aa25.22■■□□□ 1.63
SSBP4-210ENST00000601444 DICER1Q9UPY3 1922 aaKnown RBP25.22■■□□□ 1.63
SSBP4-210ENST00000601444 SPEF2Q9C093 1822 aa25.21■■□□□ 1.63
SSBP4-210ENST00000601444 DZIP1LQ8IYY4 767 aaKnown RBP25.21■■□□□ 1.63
SSBP4-210ENST00000601444 LTBP1Q14766 1721 aa25.2■■□□□ 1.63
SSBP4-210ENST00000601444 GLTPD2A6NH11 291 aa25.2■■□□□ 1.62
SSBP4-210ENST00000601444 RIMBP2O15034 1052 aa25.2■■□□□ 1.62
SSBP4-210ENST00000601444 PLIN1O60240 522 aa25.2■■□□□ 1.62
SSBP4-210ENST00000601444 JDP2Q8WYK2 163 aa25.2■■□□□ 1.62
SSBP4-210ENST00000601444 LRRFIP2Q9Y608 721 aaKnown RBP25.2■■□□□ 1.62
SSBP4-210ENST00000601444 ZNF541Q9H0D2 1346 aa25.19■■□□□ 1.62
SSBP4-210ENST00000601444 FZD9O00144 591 aa25.19■■□□□ 1.62
SSBP4-210ENST00000601444 UFL1O94874 794 aa25.19■■□□□ 1.62
SSBP4-210ENST00000601444 KIAA2012Q0VF49 1180 aa25.19■■□□□ 1.62
SSBP4-210ENST00000601444 FTSJ3Q8IY81 847 aaKnown RBP25.19■■□□□ 1.62
SSBP4-210ENST00000601444 NMRK2Q9NPI5 230 aa25.19■■□□□ 1.62
SSBP4-210ENST00000601444 XDHP47989 1333 aa25.18■■□□□ 1.62
SSBP4-210ENST00000601444 DDNO94850 711 aaPredicted RBP25.18■■□□□ 1.62
SSBP4-210ENST00000601444 WASHC4Q2M389 1173 aa25.18■■□□□ 1.62
SSBP4-210ENST00000601444 TAF7LQ5H9L4 462 aa25.18■■□□□ 1.62
SSBP4-210ENST00000601444 PANK1Q8TE04 598 aa25.18■■□□□ 1.62
SSBP4-210ENST00000601444 VPS33BQ9H267 617 aa25.18■■□□□ 1.62
SSBP4-210ENST00000601444 GGA1Q9UJY5 639 aa25.18■■□□□ 1.62
SSBP4-210ENST00000601444 CHRNDQ07001 517 aa25.17■■□□□ 1.62
SSBP4-210ENST00000601444 DPY19L2Q6NUT2 758 aa25.17■■□□□ 1.62
SSBP4-210ENST00000601444 LDHAL6AQ6ZMR3 332 aa25.17■■□□□ 1.62
SSBP4-210ENST00000601444 NIM1KQ8IY84 436 aa25.17■■□□□ 1.62
SSBP4-210ENST00000601444 KLHDC4Q8TBB5 520 aa25.17■■□□□ 1.62
SSBP4-210ENST00000601444 PUS3Q9BZE2 481 aaKnown RBP25.17■■□□□ 1.62
SSBP4-210ENST00000601444 KDM2BQ8NHM5 1336 aa25.16■■□□□ 1.62
SSBP4-210ENST00000601444 HELBQ8NG08 1087 aaPredicted RBP25.16■■□□□ 1.62
SSBP4-210ENST00000601444 RRAGCQ9HB90 399 aa25.16■■□□□ 1.62
SSBP4-210ENST00000601444 SNAP23O00161 211 aa25.15■■□□□ 1.62
SSBP4-210ENST00000601444 TAF5LO75529 589 aa25.15■■□□□ 1.62
SSBP4-210ENST00000601444 GNAI3P08754 354 aa25.15■■□□□ 1.62
SSBP4-210ENST00000601444 ATP2B4P23634 1241 aa25.15■■□□□ 1.62
SSBP4-210ENST00000601444 ITPRIPQ8IWB1 547 aa25.15■■□□□ 1.62
SSBP4-210ENST00000601444 DOK7Q18PE1 504 aa25.14■■□□□ 1.62
SSBP4-210ENST00000601444 EYA3Q99504 573 aa25.14■■□□□ 1.62
SSBP4-210ENST00000601444 CNNM1Q9NRU3 951 aa25.14■■□□□ 1.62
SSBP4-210ENST00000601444 YDJCA8MPS7 323 aa25.13■■□□□ 1.61
SSBP4-210ENST00000601444 POTECB2RU33 542 aa25.13■■□□□ 1.61
SSBP4-210ENST00000601444 KIF3CO14782 793 aa25.13■■□□□ 1.61
SSBP4-210ENST00000601444 RFX5P48382 616 aaPredicted RBP25.13■■□□□ 1.61
SSBP4-210ENST00000601444 ZC3H12CQ9C0D7 883 aaKnown RBP25.13■■□□□ 1.61
SSBP4-210ENST00000601444 ANKRD2Q9GZV1 360 aa25.13■■□□□ 1.61
SSBP4-210ENST00000601444 DBNDD1Q9H9R9 158 aa25.13■■□□□ 1.61
SSBP4-210ENST00000601444 ZNRF3Q9ULT6 936 aa25.13■■□□□ 1.61
SSBP4-210ENST00000601444 EIF6P56537 245 aaKnown RBP25.12■■□□□ 1.61
SSBP4-210ENST00000601444 LRRC24Q50LG9 513 aa25.12■■□□□ 1.61
SSBP4-210ENST00000601444 ZBTB7BO15156 539 aaPredicted RBP25.11■■□□□ 1.61
SSBP4-210ENST00000601444 KCNQ5Q9NR82 932 aa25.11■■□□□ 1.61
SSBP4-210ENST00000601444 LEMD3Q9Y2U8 911 aa25.11■■□□□ 1.61
SSBP4-210ENST00000601444 RIPOR2Q9Y4F9 1068 aa25.11■■□□□ 1.61
SSBP4-210ENST00000601444 GJA3Q9Y6H8 435 aa25.11■■□□□ 1.61
SSBP4-210ENST00000601444 GNAI2P04899 355 aa25.1■■□□□ 1.61
SSBP4-210ENST00000601444 KLRK1P26718 216 aa25.1■■□□□ 1.61
SSBP4-210ENST00000601444 CXCL9Q07325 125 aa25.1■■□□□ 1.61
SSBP4-210ENST00000601444 C20orf194Q5TEA3 1177 aa25.1■■□□□ 1.61
SSBP4-210ENST00000601444 TXNRD3Q86VQ6 643 aa25.1■■□□□ 1.61
SSBP4-210ENST00000601444 HDAC5Q9UQL6 1122 aa25.1■■□□□ 1.61
SSBP4-210ENST00000601444 ZNF804BA4D1E1 1349 aa25.1■■□□□ 1.61
SSBP4-210ENST00000601444 RAD17O75943 681 aa25.09■■□□□ 1.61
SSBP4-210ENST00000601444 PTPN12Q05209 780 aaKnown RBP25.09■■□□□ 1.61
SSBP4-210ENST00000601444 ECE2O60344 883 aa25.08■■□□□ 1.61
SSBP4-210ENST00000601444 GPC2Q8N158 579 aa25.08■■□□□ 1.61
SSBP4-210ENST00000601444 C1orf115Q9H7X2 142 aa25.08■■□□□ 1.61
SSBP4-210ENST00000601444 KCNJ4P48050 445 aa25.07■■□□□ 1.6
SSBP4-210ENST00000601444 PA2G4Q9UQ80 394 aaKnown RBP25.07■■□□□ 1.6
SSBP4-210ENST00000601444 COG6Q9Y2V7 657 aa25.07■■□□□ 1.6
SSBP4-210ENST00000601444 MED23Q9ULK4 1368 aa25.06■■□□□ 1.6
SSBP4-210ENST00000601444 MS4A1P11836 297 aa25.06■■□□□ 1.6
SSBP4-210ENST00000601444 VEGFAP15692 232 aaPredicted RBP25.06■■□□□ 1.6
SSBP4-210ENST00000601444 SIL1Q9H173 461 aa25.06■■□□□ 1.6
SSBP4-210ENST00000601444 WDR90Q96KV7 1748 aa25.06■■□□□ 1.6
SSBP4-210ENST00000601444 G3V3G9 751 aa25.05■■□□□ 1.6
SSBP4-210ENST00000601444 SRGAP3O43295 1099 aa25.05■■□□□ 1.6
SSBP4-210ENST00000601444 DCAF8Q5TAQ9 597 aa25.05■■□□□ 1.6
SSBP4-210ENST00000601444 CIAPIN1Q6FI81 312 aa25.05■■□□□ 1.6
SSBP4-210ENST00000601444 L3MBTL3Q96JM7 780 aaPredicted RBP25.05■■□□□ 1.6
SSBP4-210ENST00000601444 IRS2Q9Y4H2 1338 aa25.05■■□□□ 1.6
SSBP4-210ENST00000601444 A0A1B0GUL6 1792 aa25.04■■□□□ 1.6
SSBP4-210ENST00000601444 PNMA6EA0A0J9YXQ4 647 aa25.04■■□□□ 1.6
SSBP4-210ENST00000601444 EYA2O00167 538 aa25.04■■□□□ 1.6
SSBP4-210ENST00000601444 MTX1Q13505 466 aa25.04■■□□□ 1.6
SSBP4-210ENST00000601444 MVPQ14764 893 aaKnown RBP25.04■■□□□ 1.6
SSBP4-210ENST00000601444 ATG9AQ7Z3C6 839 aa25.04■■□□□ 1.6
SSBP4-210ENST00000601444 MROH5Q6ZUA9 1318 aa25.04■■□□□ 1.6
SSBP4-210ENST00000601444 METTL24Q5JXM2 366 aa25.03■■□□□ 1.6
SSBP4-210ENST00000601444 PSMD14O00487 310 aa25.02■■□□□ 1.6
SSBP4-210ENST00000601444 SCNN1DP51172 638 aa25.02■■□□□ 1.6
SSBP4-210ENST00000601444 VGLL2Q8N8G2 317 aa25.02■■□□□ 1.6
SSBP4-210ENST00000601444 GOLGA6L2Q8N9W4 650 aaPredicted RBP25.02■■□□□ 1.6
SSBP4-210ENST00000601444 TNIP1Q15025 636 aa25.01■■□□□ 1.59
SSBP4-210ENST00000601444 COPRSQ9NQ92 184 aa25.01■■□□□ 1.59
SSBP4-210ENST00000601444 ZBTB12Q9Y330 459 aaPredicted RBP25.01■■□□□ 1.59
SSBP4-210ENST00000601444 PDE8BO95263 885 aa25■■□□□ 1.59
SSBP4-210ENST00000601444 GMPSP49915 693 aaPredicted RBP25■■□□□ 1.59
SSBP4-210ENST00000601444 PDE3AQ14432 1141 aa25■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 141.9 ms