RNA–Protein interactions for RNA: ENST00000600718.5

SHKBP1-224, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 1,993 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-224ENST00000600718 C3orf67Q6ZVT6 689 aa21.47■■□□□ 1.03
SHKBP1-224ENST00000600718 VGLL2Q8N8G2 317 aa21.47■■□□□ 1.03
SHKBP1-224ENST00000600718 RBM25P49756 843 aaKnown RBP21.47■■□□□ 1.03
SHKBP1-224ENST00000600718 ATP2B3Q16720 1220 aa21.47■■□□□ 1.03
SHKBP1-224ENST00000600718 CAMKK2Q96RR4 588 aa21.47■■□□□ 1.03
SHKBP1-224ENST00000600718 ESYT1Q9BSJ8 1104 aa21.47■■□□□ 1.03
SHKBP1-224ENST00000600718 EP400Q96L91 3159 aa21.46■■□□□ 1.03
SHKBP1-224ENST00000600718 CNBD1Q8NA66 436 aa21.46■■□□□ 1.03
SHKBP1-224ENST00000600718 COL23A1Q86Y22 540 aaPredicted RBP21.45■■□□□ 1.02
SHKBP1-224ENST00000600718 ANKRD18AQ8IVF6 992 aa21.45■■□□□ 1.02
SHKBP1-224ENST00000600718 XAGE2Q96GT9 111 aa21.45■■□□□ 1.02
SHKBP1-224ENST00000600718 HAUS7Q99871 368 aa21.45■■□□□ 1.02
SHKBP1-224ENST00000600718 CCDC158Q5M9N0 1113 aa21.45■■□□□ 1.02
SHKBP1-224ENST00000600718 GORABQ5T7V8 394 aa21.45■■□□□ 1.02
SHKBP1-224ENST00000600718 PPIL4Q8WUA2 492 aaKnown RBP eCLIP21.45■■□□□ 1.02
SHKBP1-224ENST00000600718 SERPINB2P05120 415 aa21.44■■□□□ 1.02
SHKBP1-224ENST00000600718 NLGN1Q8N2Q7 840 aa21.44■■□□□ 1.02
SHKBP1-224ENST00000600718 HIP1O00291 1037 aa21.43■■□□□ 1.02
SHKBP1-224ENST00000600718 EN1Q05925 392 aaPredicted RBP21.43■■□□□ 1.02
SHKBP1-224ENST00000600718 SF3B2Q13435 895 aaKnown RBP21.43■■□□□ 1.02
SHKBP1-224ENST00000600718 EZH2Q15910 746 aaKnown RBP21.43■■□□□ 1.02
SHKBP1-224ENST00000600718 USP26Q9BXU7 913 aa21.43■■□□□ 1.02
SHKBP1-224ENST00000600718 PUM3Q15397 648 aaKnown RBP21.43■■□□□ 1.02
SHKBP1-224ENST00000600718 PRR5LQ6MZQ0 368 aa21.43■■□□□ 1.02
SHKBP1-224ENST00000600718 BSDC1Q9NW68 430 aaPredicted RBP21.43■■□□□ 1.02
SHKBP1-224ENST00000600718 ST5P78524 1137 aa21.42■■□□□ 1.02
SHKBP1-224ENST00000600718 CCDC24Q8N4L8 307 aa21.42■■□□□ 1.02
SHKBP1-224ENST00000600718 RUFY2Q8WXA3 655 aa21.42■■□□□ 1.02
SHKBP1-224ENST00000600718 LPIN2Q92539 896 aa21.42■■□□□ 1.02
SHKBP1-224ENST00000600718 FGFR2P21802 821 aa21.41■■□□□ 1.02
SHKBP1-224ENST00000600718 ADORA1P30542 326 aa21.41■■□□□ 1.02
SHKBP1-224ENST00000600718 DIAPH3Q9NSV4 1193 aa21.41■■□□□ 1.02
SHKBP1-224ENST00000600718 IFIT1P09914 478 aaKnown RBP21.41■■□□□ 1.02
SHKBP1-224ENST00000600718 TTC39AQ5SRH9 613 aa21.41■■□□□ 1.02
SHKBP1-224ENST00000600718 DDX46Q7L014 1031 aaKnown RBP21.41■■□□□ 1.02
SHKBP1-224ENST00000600718 HELBQ8NG08 1087 aaPredicted RBP21.41■■□□□ 1.02
SHKBP1-224ENST00000600718 AK9Q5TCS8 1911 aa21.4■■□□□ 1.02
SHKBP1-224ENST00000600718 POLRMTO00411 1230 aaKnown RBP21.4■■□□□ 1.02
SHKBP1-224ENST00000600718 BAG6P46379 1132 aa21.4■■□□□ 1.02
SHKBP1-224ENST00000600718 RPS8P62241 208 aaKnown RBP21.4■■□□□ 1.02
SHKBP1-224ENST00000600718 TICAM2Q86XR7 235 aa21.4■■□□□ 1.02
SHKBP1-224ENST00000600718 FSD1Q9BTV5 496 aa21.4■■□□□ 1.02
SHKBP1-224ENST00000600718 PNPLA7Q6ZV29 1317 aa21.39■■□□□ 1.02
SHKBP1-224ENST00000600718 EPB41L2O43491 1005 aaKnown RBP21.39■■□□□ 1.02
SHKBP1-224ENST00000600718 SLC5A1P13866 664 aa21.39■■□□□ 1.02
SHKBP1-224ENST00000600718 CHRNDQ07001 517 aa21.39■■□□□ 1.02
SHKBP1-224ENST00000600718 DDR1Q08345 913 aa21.39■■□□□ 1.02
SHKBP1-224ENST00000600718 ZNF512BQ96KM6 892 aaPredicted RBP21.39■■□□□ 1.02
SHKBP1-224ENST00000600718 DNAJC2Q99543 621 aaKnown RBP21.39■■□□□ 1.02
SHKBP1-224ENST00000600718 SGSM2O43147 1006 aa21.39■■□□□ 1.01
SHKBP1-224ENST00000600718 CELF1Q92879 486 aaKnown RBP21.39■■□□□ 1.01
SHKBP1-224ENST00000600718 STK32BQ9NY57 414 aa21.39■■□□□ 1.01
SHKBP1-224ENST00000600718 SLC15A2Q16348 729 aa21.38■■□□□ 1.01
SHKBP1-224ENST00000600718 RFX7Q2KHR2 1363 aa21.38■■□□□ 1.01
SHKBP1-224ENST00000600718 TAF5LO75529 589 aa21.37■■□□□ 1.01
SHKBP1-224ENST00000600718 CWC27Q6UX04 472 aaKnown RBP21.37■■□□□ 1.01
SHKBP1-224ENST00000600718 PAG1Q9NWQ8 432 aa21.37■■□□□ 1.01
SHKBP1-224ENST00000600718 KBTBD3Q8NAB2 608 aa21.37■■□□□ 1.01
SHKBP1-224ENST00000600718 EDC3Q96F86 508 aaKnown RBP21.37■■□□□ 1.01
SHKBP1-224ENST00000600718 MINPP1Q9UNW1 487 aa21.37■■□□□ 1.01
SHKBP1-224ENST00000600718 CASZ1Q86V15 1759 aa21.36■■□□□ 1.01
SHKBP1-224ENST00000600718 UQCRFS1P1P0C7P4 283 aa21.36■■□□□ 1.01
SHKBP1-224ENST00000600718 ANO2Q9NQ90 1003 aa21.36■■□□□ 1.01
SHKBP1-224ENST00000600718 GOLIM4O00461 696 aa21.35■■□□□ 1.01
SHKBP1-224ENST00000600718 CRY2Q49AN0 593 aa21.35■■□□□ 1.01
SHKBP1-224ENST00000600718 NDUFB9Q9Y6M9 179 aa21.35■■□□□ 1.01
SHKBP1-224ENST00000600718 COL4A1P02462 1669 aa21.35■■□□□ 1.01
SHKBP1-224ENST00000600718 GRAPQ13588 217 aa21.34■■□□□ 1.01
SHKBP1-224ENST00000600718 UBE4AQ14139 1066 aa21.34■■□□□ 1.01
SHKBP1-224ENST00000600718 CCDC102BQ68D86 513 aa21.34■■□□□ 1.01
SHKBP1-224ENST00000600718 KIAA1211Q6ZU35 1233 aa21.34■■□□□ 1.01
SHKBP1-224ENST00000600718 GRAPLQ8TC17 118 aaPredicted RBP21.34■■□□□ 1.01
SHKBP1-224ENST00000600718 ANKRD2Q9GZV1 360 aa21.34■■□□□ 1.01
SHKBP1-224ENST00000600718 ANO8Q9HCE9 1232 aaPredicted RBP21.34■■□□□ 1.01
SHKBP1-224ENST00000600718 TNRC6CQ9HCJ0 1690 aaKnown RBP21.34■■□□□ 1.01
SHKBP1-224ENST00000600718 RAD50Q92878 1312 aa21.34■■□□□ 1.01
SHKBP1-224ENST00000600718 SPEF2Q9C093 1822 aa21.34■■□□□ 1.01
SHKBP1-224ENST00000600718 NMIQ13287 307 aaPredicted RBP21.34■■□□□ 1.01
SHKBP1-224ENST00000600718 RPGRQ92834 1020 aaKnown RBP21.34■■□□□ 1.01
SHKBP1-224ENST00000600718 IL25Q9H293 177 aa21.34■■□□□ 1.01
SHKBP1-224ENST00000600718 KLRG2A4D1S0 409 aaPredicted RBP21.33■■□□□ 1.01
SHKBP1-224ENST00000600718 MCCP23508 829 aa21.33■■□□□ 1.01
SHKBP1-224ENST00000600718 ARID4AP29374 1257 aaPredicted RBP21.33■■□□□ 1.01
SHKBP1-224ENST00000600718 FKBP4Q02790 459 aaKnown RBP eCLIP21.33■■□□□ 1.01
SHKBP1-224ENST00000600718 CCDC125Q86Z20 511 aa21.33■■□□□ 1.01
SHKBP1-224ENST00000600718 KIF2CQ99661 725 aa21.33■■□□□ 1.01
SHKBP1-224ENST00000600718 SNRKQ9NRH2 765 aa21.33■■□□□ 1.01
SHKBP1-224ENST00000600718 BECN1Q14457 450 aa21.32■■□□□ 1
SHKBP1-224ENST00000600718 RBM17Q96I25 401 aaKnown RBP21.32■■□□□ 1
SHKBP1-224ENST00000600718 PARP3Q9Y6F1 533 aa21.32■■□□□ 1
SHKBP1-224ENST00000600718 PHKA1P46020 1223 aa21.32■■□□□ 1
SHKBP1-224ENST00000600718 LRRFIP1Q32MZ4 808 aaKnown RBP21.32■■□□□ 1
SHKBP1-224ENST00000600718 FAM227BQ96M60 508 aa21.32■■□□□ 1
SHKBP1-224ENST00000600718 DAXXQ9UER7 740 aaPredicted RBP21.32■■□□□ 1
SHKBP1-224ENST00000600718 ARAP2Q8WZ64 1704 aa21.31■■□□□ 1
SHKBP1-224ENST00000600718 SNAP23O00161 211 aa21.31■■□□□ 1
SHKBP1-224ENST00000600718 MMP10P09238 476 aa21.31■■□□□ 1
SHKBP1-224ENST00000600718 SCARF1Q14162 830 aa21.31■■□□□ 1
SHKBP1-224ENST00000600718 DEFB132Q7Z7B7 95 aa21.31■■□□□ 1
SHKBP1-224ENST00000600718 BRIP1Q9BX63 1249 aa21.31■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms