RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 BSDC1Q9NW68 430 aaPredicted RBP19.38■□□□□ 0.69
TRIM28-203ENST00000593582 GPRC5DQ9NZD1 345 aa19.38■□□□□ 0.69
TRIM28-203ENST00000593582 IGHMBP2P38935 993 aaKnown RBP19.37■□□□□ 0.69
TRIM28-203ENST00000593582 GMPSP49915 693 aaPredicted RBP19.37■□□□□ 0.69
TRIM28-203ENST00000593582 KLRG1Q96E93 195 aa19.37■□□□□ 0.69
TRIM28-203ENST00000593582 CDCA7LQ96GN5 454 aa19.37■□□□□ 0.69
TRIM28-203ENST00000593582 GPR101Q96P66 508 aaPredicted RBP19.37■□□□□ 0.69
TRIM28-203ENST00000593582 G3V3G9 751 aa19.36■□□□□ 0.69
TRIM28-203ENST00000593582 GRM8O00222 908 aa19.36■□□□□ 0.69
TRIM28-203ENST00000593582 ECE2O60344 883 aa19.36■□□□□ 0.69
TRIM28-203ENST00000593582 CSF1RP07333 972 aa19.36■□□□□ 0.69
TRIM28-203ENST00000593582 ITGA6P23229 1130 aa19.36■□□□□ 0.69
TRIM28-203ENST00000593582 DOK7Q18PE1 504 aa19.36■□□□□ 0.69
TRIM28-203ENST00000593582 FAM161AQ3B820 660 aa19.36■□□□□ 0.69
TRIM28-203ENST00000593582 DCAF8Q5TAQ9 597 aa19.36■□□□□ 0.69
TRIM28-203ENST00000593582 MRPL50Q8N5N7 158 aaKnown RBP19.36■□□□□ 0.69
TRIM28-203ENST00000593582 SRCIN1Q9C0H9 1055 aa19.36■□□□□ 0.69
TRIM28-203ENST00000593582 ADARB2Q9NS39 739 aaKnown RBP19.36■□□□□ 0.69
TRIM28-203ENST00000593582 C9orf78Q9NZ63 289 aaPredicted RBP19.36■□□□□ 0.69
TRIM28-203ENST00000593582 LTBP1Q14766 1721 aa19.36■□□□□ 0.69
TRIM28-203ENST00000593582 ALDH1L1O75891 902 aa19.35■□□□□ 0.69
TRIM28-203ENST00000593582 ATP2B4P23634 1241 aa19.35■□□□□ 0.69
TRIM28-203ENST00000593582 MAP1SQ66K74 1059 aaPredicted RBP19.35■□□□□ 0.69
TRIM28-203ENST00000593582 DIEXFQ68CQ4 756 aaKnown RBP19.35■□□□□ 0.69
TRIM28-203ENST00000593582 CNTROBQ8N137 903 aa19.35■□□□□ 0.69
TRIM28-203ENST00000593582 MINPP1Q9UNW1 487 aa19.35■□□□□ 0.69
TRIM28-203ENST00000593582 PCNTO95613 3336 aa19.35■□□□□ 0.69
TRIM28-203ENST00000593582 MYH3P11055 1940 aa19.35■□□□□ 0.69
TRIM28-203ENST00000593582 PTPRCP08575 1304 aa19.34■□□□□ 0.69
TRIM28-203ENST00000593582 PASKQ96RG2 1323 aa19.34■□□□□ 0.69
TRIM28-203ENST00000593582 PSMD14O00487 310 aa19.34■□□□□ 0.69
TRIM28-203ENST00000593582 ITGBL1O95965 494 aaPredicted RBP19.34■□□□□ 0.69
TRIM28-203ENST00000593582 SSH1Q8WYL5 1049 aa19.34■□□□□ 0.69
TRIM28-203ENST00000593582 MPHOSPH8Q99549 860 aa19.34■□□□□ 0.69
TRIM28-203ENST00000593582 CREBZFQ9NS37 354 aa19.34■□□□□ 0.69
TRIM28-203ENST00000593582 ANKRD18BA2A2Z9 1011 aa19.33■□□□□ 0.68
TRIM28-203ENST00000593582 FOXO4P98177 505 aa19.33■□□□□ 0.68
TRIM28-203ENST00000593582 TRMT2AQ8IZ69 625 aaKnown RBP19.33■□□□□ 0.68
TRIM28-203ENST00000593582 ADAMTSL1Q8N6G6 1762 aa19.33■□□□□ 0.68
TRIM28-203ENST00000593582 H7C1D1 291 aa19.32■□□□□ 0.68
TRIM28-203ENST00000593582 CT47B1P0C2W7 299 aaPredicted RBP19.32■□□□□ 0.68
TRIM28-203ENST00000593582 IFIT5Q13325 482 aaKnown RBP19.32■□□□□ 0.68
TRIM28-203ENST00000593582 ALDH1L2Q3SY69 923 aa19.32■□□□□ 0.68
TRIM28-203ENST00000593582 DPF2Q92785 391 aa19.32■□□□□ 0.68
TRIM28-203ENST00000593582 CNOT7Q9UIV1 285 aaKnown RBP19.32■□□□□ 0.68
TRIM28-203ENST00000593582 ZBTB12Q9Y330 459 aaPredicted RBP19.32■□□□□ 0.68
TRIM28-203ENST00000593582 CHMP3Q9Y3E7 222 aa19.32■□□□□ 0.68
TRIM28-203ENST00000593582 RPS12P25398 132 aaKnown RBP19.31■□□□□ 0.68
TRIM28-203ENST00000593582 CCT4P50991 539 aaKnown RBP19.31■□□□□ 0.68
TRIM28-203ENST00000593582 ANKRD2Q9GZV1 360 aa19.31■□□□□ 0.68
TRIM28-203ENST00000593582 KCNQ5Q9NR82 932 aa19.31■□□□□ 0.68
TRIM28-203ENST00000593582 LMBR1LQ6UX01 489 aa19.3■□□□□ 0.68
TRIM28-203ENST00000593582 MICALL2Q8IY33 904 aa19.3■□□□□ 0.68
TRIM28-203ENST00000593582 MIER1Q8N108 512 aa19.3■□□□□ 0.68
TRIM28-203ENST00000593582 SMC4Q9NTJ3 1288 aa19.3■□□□□ 0.68
TRIM28-203ENST00000593582 LEMD3Q9Y2U8 911 aa19.3■□□□□ 0.68
TRIM28-203ENST00000593582 TMEM88BA6NKF7 163 aa19.29■□□□□ 0.68
TRIM28-203ENST00000593582 CCDC57Q2TAC2 916 aa19.29■□□□□ 0.68
TRIM28-203ENST00000593582 MED23Q9ULK4 1368 aa19.29■□□□□ 0.68
TRIM28-203ENST00000593582 WTIPA6NIX2 430 aaPredicted RBP19.28■□□□□ 0.68
TRIM28-203ENST00000593582 VIL1P09327 827 aaKnown RBP19.28■□□□□ 0.68
TRIM28-203ENST00000593582 EPHA10Q5JZY3 1008 aa19.28■□□□□ 0.68
TRIM28-203ENST00000593582 PODNQ7Z5L7 613 aa19.28■□□□□ 0.68
TRIM28-203ENST00000593582 JMYQ8N9B5 988 aa19.28■□□□□ 0.68
TRIM28-203ENST00000593582 ZC3H15Q8WU90 426 aaKnown RBP19.28■□□□□ 0.68
TRIM28-203ENST00000593582 KCNJ4P48050 445 aa19.27■□□□□ 0.68
TRIM28-203ENST00000593582 CHRNDQ07001 517 aa19.27■□□□□ 0.68
TRIM28-203ENST00000593582 TAF7LQ5H9L4 462 aa19.27■□□□□ 0.68
TRIM28-203ENST00000593582 ZNF804BA4D1E1 1349 aa19.26■□□□□ 0.67
TRIM28-203ENST00000593582 UTYO14607 1347 aa19.26■□□□□ 0.67
TRIM28-203ENST00000593582 SPEF2Q9C093 1822 aa19.26■□□□□ 0.67
TRIM28-203ENST00000593582 SHTN1A0MZ66 631 aa19.26■□□□□ 0.67
TRIM28-203ENST00000593582 NBPF7P0C2Y1 421 aaPredicted RBP19.26■□□□□ 0.67
TRIM28-203ENST00000593582 HIRAP54198 1017 aaPredicted RBP19.26■□□□□ 0.67
TRIM28-203ENST00000593582 TRPM4Q8TD43 1214 aa19.26■□□□□ 0.67
TRIM28-203ENST00000593582 USP17L3A6NCW0 530 aa19.25■□□□□ 0.67
TRIM28-203ENST00000593582 USP17L4A6NCW7 530 aa19.25■□□□□ 0.67
TRIM28-203ENST00000593582 RSBN1LQ6PCB5 846 aaPredicted RBP19.25■□□□□ 0.67
TRIM28-203ENST00000593582 USP17L1Q7RTZ2 530 aa19.25■□□□□ 0.67
TRIM28-203ENST00000593582 SAMD7Q7Z3H4 446 aa19.25■□□□□ 0.67
TRIM28-203ENST00000593582 SUCLG2Q96I99 432 aa19.25■□□□□ 0.67
TRIM28-203ENST00000593582 COA1Q9GZY4 146 aa19.25■□□□□ 0.67
TRIM28-203ENST00000593582 MKRN1Q9UHC7 482 aaKnown RBP19.25■□□□□ 0.67
TRIM28-203ENST00000593582 PGAP2Q9UHJ9 254 aa19.25■□□□□ 0.67
TRIM28-203ENST00000593582 LDHAL6AQ6ZMR3 332 aa19.24■□□□□ 0.67
TRIM28-203ENST00000593582 AGBL3Q8NEM8 1001 aa19.24■□□□□ 0.67
TRIM28-203ENST00000593582 TRAF5O00463 557 aa19.23■□□□□ 0.67
TRIM28-203ENST00000593582 TBC1D10BQ4KMP7 808 aaPredicted RBP19.23■□□□□ 0.67
TRIM28-203ENST00000593582 KAZALD1Q96I82 304 aa19.23■□□□□ 0.67
TRIM28-203ENST00000593582 ZNF594Q96JF6 807 aaPredicted RBP19.23■□□□□ 0.67
TRIM28-203ENST00000593582 BICC1Q9H694 974 aaKnown RBP19.23■□□□□ 0.67
TRIM28-203ENST00000593582 CNNM1Q9NRU3 951 aa19.23■□□□□ 0.67
TRIM28-203ENST00000593582 CNTNAP1P78357 1384 aa19.22■□□□□ 0.67
TRIM28-203ENST00000593582 TAF5LO75529 589 aa19.22■□□□□ 0.67
TRIM28-203ENST00000593582 RBM26Q5T8P6 1007 aaKnown RBP19.22■□□□□ 0.67
TRIM28-203ENST00000593582 TXNRD3Q86VQ6 643 aa19.22■□□□□ 0.67
TRIM28-203ENST00000593582 HELBQ8NG08 1087 aaPredicted RBP19.22■□□□□ 0.67
TRIM28-203ENST00000593582 ABT1Q9ULW3 272 aaKnown RBP19.22■□□□□ 0.67
TRIM28-203ENST00000593582 NOB1Q9ULX3 412 aaKnown RBP19.22■□□□□ 0.67
TRIM28-203ENST00000593582 ZNF609O15014 1411 aa19.22■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 95.7 ms