RNA–Protein interactions for RNA: ENST00000590541.1

RETREG3-210, Transcript of reticulophagy regulator family member 3, humanhuman

TSL 4

Gene RETREG3, Length 409 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-210ENST00000590541 VIL1P09327 827 aaKnown RBP22.68■■□□□ 1.22
RETREG3-210ENST00000590541 KRT24Q2M2I5 525 aa22.68■■□□□ 1.22
RETREG3-210ENST00000590541 CTU1Q7Z7A3 348 aaKnown RBP22.68■■□□□ 1.22
RETREG3-210ENST00000590541 SULF1Q8IWU6 871 aa22.68■■□□□ 1.22
RETREG3-210ENST00000590541 TBC1D16Q8TBP0 767 aa22.68■■□□□ 1.22
RETREG3-210ENST00000590541 CDCA5Q96FF9 252 aa22.68■■□□□ 1.22
RETREG3-210ENST00000590541 EYA3Q99504 573 aa22.68■■□□□ 1.22
RETREG3-210ENST00000590541 ISCA1Q9BUE6 129 aa22.68■■□□□ 1.22
RETREG3-210ENST00000590541 SCN9AQ15858 1988 aa22.67■■□□□ 1.22
RETREG3-210ENST00000590541 RASAL3Q86YV0 1011 aa22.66■■□□□ 1.22
RETREG3-210ENST00000590541 PLBD2Q8NHP8 589 aa22.66■■□□□ 1.22
RETREG3-210ENST00000590541 CHPF2Q9P2E5 772 aa22.66■■□□□ 1.22
RETREG3-210ENST00000590541 ATP5J2-PTCD1G3V325 749 aa22.65■■□□□ 1.22
RETREG3-210ENST00000590541 PRPF38BQ5VTL8 546 aaKnown RBP22.65■■□□□ 1.22
RETREG3-210ENST00000590541 TMPOP42166 694 aaKnown RBP22.64■■□□□ 1.21
RETREG3-210ENST00000590541 ANKRD13DQ6ZTN6 518 aa22.64■■□□□ 1.21
RETREG3-210ENST00000590541 ZNF280AP59817 542 aaPredicted RBP22.63■■□□□ 1.21
RETREG3-210ENST00000590541 RPS8P62241 208 aaKnown RBP22.63■■□□□ 1.21
RETREG3-210ENST00000590541 RTL5Q5HYW3 569 aaPredicted RBP22.63■■□□□ 1.21
RETREG3-210ENST00000590541 ANGEL2Q5VTE6 544 aaKnown RBP22.63■■□□□ 1.21
RETREG3-210ENST00000590541 REM2Q8IYK8 340 aaPredicted RBP22.63■■□□□ 1.21
RETREG3-210ENST00000590541 ZC3H12CQ9C0D7 883 aaKnown RBP22.63■■□□□ 1.21
RETREG3-210ENST00000590541 PODXL2Q9NZ53 605 aa22.63■■□□□ 1.21
RETREG3-210ENST00000590541 HPS5Q9UPZ3 1129 aa22.63■■□□□ 1.21
RETREG3-210ENST00000590541 CHL1O00533 1208 aa22.62■■□□□ 1.21
RETREG3-210ENST00000590541 SCARF1Q14162 830 aa22.62■■□□□ 1.21
RETREG3-210ENST00000590541 ZNF609O15014 1411 aa22.62■■□□□ 1.21
RETREG3-210ENST00000590541 IRS4O14654 1257 aaPredicted RBP22.61■■□□□ 1.21
RETREG3-210ENST00000590541 LMOD3Q0VAK6 560 aa22.61■■□□□ 1.21
RETREG3-210ENST00000590541 FKBP1BP68106 108 aa22.6■■□□□ 1.21
RETREG3-210ENST00000590541 HDGFL1Q5TGJ6 251 aa22.6■■□□□ 1.21
RETREG3-210ENST00000590541 RSBN1LQ6PCB5 846 aaPredicted RBP22.6■■□□□ 1.21
RETREG3-210ENST00000590541 AGBL3Q8NEM8 1001 aa22.6■■□□□ 1.21
RETREG3-210ENST00000590541 PAPPA2Q9BXP8 1791 aa22.6■■□□□ 1.21
RETREG3-210ENST00000590541 UFL1O94874 794 aa22.59■■□□□ 1.21
RETREG3-210ENST00000590541 TRIM28Q13263 835 aaKnown RBP22.59■■□□□ 1.21
RETREG3-210ENST00000590541 SEC31BQ9NQW1 1179 aa22.59■■□□□ 1.21
RETREG3-210ENST00000590541 MOB2Q70IA6 237 aa22.58■■□□□ 1.21
RETREG3-210ENST00000590541 ZNF296Q8WUU4 475 aaPredicted RBP22.58■■□□□ 1.21
RETREG3-210ENST00000590541 GMLQ99445 158 aa22.58■■□□□ 1.21
RETREG3-210ENST00000590541 DBF4Q9UBU7 674 aaPredicted RBP22.58■■□□□ 1.21
RETREG3-210ENST00000590541 G3V3G9 751 aa22.57■■□□□ 1.2
RETREG3-210ENST00000590541 PKN2Q16513 984 aaKnown RBP22.57■■□□□ 1.2
RETREG3-210ENST00000590541 DCAF8Q5TAQ9 597 aa22.57■■□□□ 1.2
RETREG3-210ENST00000590541 ANKIB1Q9P2G1 1089 aa22.57■■□□□ 1.2
RETREG3-210ENST00000590541 GGA1Q9UJY5 639 aa22.57■■□□□ 1.2
RETREG3-210ENST00000590541 SCAF8Q9UPN6 1271 aaKnown RBP22.57■■□□□ 1.2
RETREG3-210ENST00000590541 PSME4Q14997 1843 aa22.57■■□□□ 1.2
RETREG3-210ENST00000590541 PITPNM2Q9BZ72 1349 aa22.57■■□□□ 1.2
RETREG3-210ENST00000590541 TBC1D8O95759 1140 aa22.56■■□□□ 1.2
RETREG3-210ENST00000590541 HOXB7P09629 217 aa22.56■■□□□ 1.2
RETREG3-210ENST00000590541 RALBP1Q15311 655 aa22.56■■□□□ 1.2
RETREG3-210ENST00000590541 MYOZ2Q9NPC6 264 aa22.56■■□□□ 1.2
RETREG3-210ENST00000590541 HDAC9Q9UKV0 1011 aa22.56■■□□□ 1.2
RETREG3-210ENST00000590541 LAS1LQ9Y4W2 734 aaKnown RBP22.56■■□□□ 1.2
RETREG3-210ENST00000590541 USP17L8P0C7I0 530 aa22.55■■□□□ 1.2
RETREG3-210ENST00000590541 NEUROD2Q15784 382 aa22.55■■□□□ 1.2
RETREG3-210ENST00000590541 UBE2Q2LH0YL09 131 aa22.54■■□□□ 1.2
RETREG3-210ENST00000590541 ZBTB38Q8NAP3 1195 aaPredicted RBP22.54■■□□□ 1.2
RETREG3-210ENST00000590541 HYPKQ9NX55 129 aa22.54■■□□□ 1.2
RETREG3-210ENST00000590541 TRIM35Q9UPQ4 493 aa22.54■■□□□ 1.2
RETREG3-210ENST00000590541 PRAMEF18Q5VWM3 479 aa22.53■■□□□ 1.2
RETREG3-210ENST00000590541 TM4SF4P48230 202 aa22.52■■□□□ 1.2
RETREG3-210ENST00000590541 USP17L3A6NCW0 530 aa22.51■■□□□ 1.19
RETREG3-210ENST00000590541 USP17L4A6NCW7 530 aa22.51■■□□□ 1.19
RETREG3-210ENST00000590541 GPR25O00155 361 aa22.51■■□□□ 1.19
RETREG3-210ENST00000590541 NOM1Q5C9Z4 860 aaKnown RBP22.51■■□□□ 1.19
RETREG3-210ENST00000590541 USP17L1Q7RTZ2 530 aa22.51■■□□□ 1.19
RETREG3-210ENST00000590541 CCDC146Q8IYE0 955 aa22.51■■□□□ 1.19
RETREG3-210ENST00000590541 NBPF9Q3BBW0 867 aa22.5■■□□□ 1.19
RETREG3-210ENST00000590541 DUSP27Q5VZP5 1158 aa22.5■■□□□ 1.19
RETREG3-210ENST00000590541 PODNQ7Z5L7 613 aa22.5■■□□□ 1.19
RETREG3-210ENST00000590541 XDHP47989 1333 aa22.5■■□□□ 1.19
RETREG3-210ENST00000590541 DDX10Q13206 875 aaKnown RBP22.49■■□□□ 1.19
RETREG3-210ENST00000590541 CCDC152Q4G0S7 254 aa22.49■■□□□ 1.19
RETREG3-210ENST00000590541 FBXO46Q6PJ61 603 aaPredicted RBP22.49■■□□□ 1.19
RETREG3-210ENST00000590541 RIC3Q7Z5B4 369 aa22.49■■□□□ 1.19
RETREG3-210ENST00000590541 CCDC85AQ96PX6 553 aaPredicted RBP22.49■■□□□ 1.19
RETREG3-210ENST00000590541 WTIPA6NIX2 430 aaPredicted RBP22.48■■□□□ 1.19
RETREG3-210ENST00000590541 PDE8AO60658 829 aa22.48■■□□□ 1.19
RETREG3-210ENST00000590541 PCCAP05165 728 aaPredicted RBP22.48■■□□□ 1.19
RETREG3-210ENST00000590541 HSP90B1P14625 803 aaKnown RBP22.48■■□□□ 1.19
RETREG3-210ENST00000590541 ATP2B4P23634 1241 aa22.48■■□□□ 1.19
RETREG3-210ENST00000590541 PHAXQ9H814 394 aaKnown RBP22.48■■□□□ 1.19
RETREG3-210ENST00000590541 MKRN3Q13064 507 aaKnown RBP22.47■■□□□ 1.19
RETREG3-210ENST00000590541 TTLL12Q14166 644 aaPredicted RBP22.47■■□□□ 1.19
RETREG3-210ENST00000590541 JARID2Q92833 1246 aaPredicted RBP22.47■■□□□ 1.19
RETREG3-210ENST00000590541 MYD88Q99836 296 aa22.47■■□□□ 1.19
RETREG3-210ENST00000590541 MXD3Q9BW11 206 aa22.47■■□□□ 1.19
RETREG3-210ENST00000590541 R3HDMLQ9H3Y0 253 aa22.47■■□□□ 1.19
RETREG3-210ENST00000590541 WNT10BO00744 389 aa22.46■■□□□ 1.19
RETREG3-210ENST00000590541 ZEB1P37275 1124 aaPredicted RBP22.46■■□□□ 1.19
RETREG3-210ENST00000590541 GOLGA2Q08379 1002 aa22.46■■□□□ 1.19
RETREG3-210ENST00000590541 ANKRD18AQ8IVF6 992 aa22.46■■□□□ 1.19
RETREG3-210ENST00000590541 CCDC191Q8NCU4 936 aa22.46■■□□□ 1.19
RETREG3-210ENST00000590541 CFHR5Q9BXR6 569 aa22.46■■□□□ 1.19
RETREG3-210ENST00000590541 ZNF646O15015 1829 aaPredicted RBP22.45■■□□□ 1.19
RETREG3-210ENST00000590541 DACT2Q5SW24 774 aa22.45■■□□□ 1.18
RETREG3-210ENST00000590541 FKTNO75072 461 aa22.44■■□□□ 1.18
RETREG3-210ENST00000590541 PTPN12Q05209 780 aaKnown RBP22.44■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms