RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 TFIP11Q9UBB9 837 aaKnown RBP26.99■■□□□ 1.91
VPS53-211ENST00000571805 GOLIM4O00461 696 aa26.98■■□□□ 1.91
VPS53-211ENST00000571805 TICAM2Q86XR7 235 aa26.98■■□□□ 1.91
VPS53-211ENST00000571805 AP5Z1O43299 807 aa26.98■■□□□ 1.91
VPS53-211ENST00000571805 SLFNL1Q499Z3 407 aa26.98■■□□□ 1.91
VPS53-211ENST00000571805 CCDC191Q8NCU4 936 aa26.98■■□□□ 1.91
VPS53-211ENST00000571805 LEO1Q8WVC0 666 aaPredicted RBP26.98■■□□□ 1.91
VPS53-211ENST00000571805 RRP9O43818 475 aaKnown RBP26.97■■□□□ 1.91
VPS53-211ENST00000571805 CCDC192P0DO97 292 aa26.97■■□□□ 1.91
VPS53-211ENST00000571805 KIAA2012Q0VF49 1180 aa26.97■■□□□ 1.91
VPS53-211ENST00000571805 SPATA32Q96LK8 384 aa26.97■■□□□ 1.91
VPS53-211ENST00000571805 PAPPAQ13219 1627 aa26.97■■□□□ 1.91
VPS53-211ENST00000571805 NKX1-1Q15270 411 aaPredicted RBP26.97■■□□□ 1.91
VPS53-211ENST00000571805 LRRC24Q50LG9 513 aa26.97■■□□□ 1.91
VPS53-211ENST00000571805 MPNDQ8N594 471 aa26.97■■□□□ 1.91
VPS53-211ENST00000571805 EYA2O00167 538 aa26.96■■□□□ 1.91
VPS53-211ENST00000571805 BRF1Q92994 677 aa26.96■■□□□ 1.91
VPS53-211ENST00000571805 RESTQ13127 1097 aa26.95■■□□□ 1.91
VPS53-211ENST00000571805 ZMYM1Q5SVZ6 1142 aa26.95■■□□□ 1.91
VPS53-211ENST00000571805 ZNF830Q96NB3 372 aaPredicted RBP26.95■■□□□ 1.91
VPS53-211ENST00000571805 DSCC1Q9BVC3 393 aa26.95■■□□□ 1.91
VPS53-211ENST00000571805 NUP62CLQ9H1M0 184 aa26.95■■□□□ 1.91
VPS53-211ENST00000571805 ZBTB3Q9H5J0 574 aa26.95■■□□□ 1.91
VPS53-211ENST00000571805 SCRN1Q12765 414 aa26.95■■□□□ 1.9
VPS53-211ENST00000571805 SMARCC2Q8TAQ2 1214 aa26.95■■□□□ 1.9
VPS53-211ENST00000571805 ZNF594Q96JF6 807 aaPredicted RBP26.95■■□□□ 1.9
VPS53-211ENST00000571805 LRRC2Q9BYS8 371 aa26.95■■□□□ 1.9
VPS53-211ENST00000571805 HMGB1P09429 215 aaKnown RBP26.94■■□□□ 1.9
VPS53-211ENST00000571805 HSP90B1P14625 803 aaKnown RBP26.94■■□□□ 1.9
VPS53-211ENST00000571805 HSP90AA2PQ14568 343 aaPredicted RBP26.94■■□□□ 1.9
VPS53-211ENST00000571805 MAP3K11Q16584 847 aa26.94■■□□□ 1.9
VPS53-211ENST00000571805 TOM1L2Q6ZVM7 507 aa26.94■■□□□ 1.9
VPS53-211ENST00000571805 DHX32Q7L7V1 743 aaKnown RBP26.94■■□□□ 1.9
VPS53-211ENST00000571805 ATG3Q9NT62 314 aa26.94■■□□□ 1.9
VPS53-211ENST00000571805 PFKFB2O60825 505 aa26.93■■□□□ 1.9
VPS53-211ENST00000571805 DACT1Q9NYF0 836 aa26.93■■□□□ 1.9
VPS53-211ENST00000571805 CIAO1O76071 339 aa26.93■■□□□ 1.9
VPS53-211ENST00000571805 CAMK4Q16566 473 aa26.93■■□□□ 1.9
VPS53-211ENST00000571805 EXOSC10Q01780 885 aaKnown RBP26.92■■□□□ 1.9
VPS53-211ENST00000571805 BRINP3Q76B58 766 aa26.92■■□□□ 1.9
VPS53-211ENST00000571805 LLPHQ9BRT6 129 aaKnown RBP26.92■■□□□ 1.9
VPS53-211ENST00000571805 PRDM11Q9NQV5 511 aa26.92■■□□□ 1.9
VPS53-211ENST00000571805 PGBD1Q96JS3 809 aa26.92■■□□□ 1.9
VPS53-211ENST00000571805 AGXT2Q9BYV1 514 aa26.92■■□□□ 1.9
VPS53-211ENST00000571805 TTC12Q9H892 705 aaPredicted RBP26.92■■□□□ 1.9
VPS53-211ENST00000571805 MRVI1Q9Y6F6 885 aa26.92■■□□□ 1.9
VPS53-211ENST00000571805 A0A1B0GUL7 405 aa26.91■■□□□ 1.9
VPS53-211ENST00000571805 PIBF1Q8WXW3 757 aa26.91■■□□□ 1.9
VPS53-211ENST00000571805 DDX11Q96FC9 970 aa26.91■■□□□ 1.9
VPS53-211ENST00000571805 TNS2Q63HR2 1409 aa26.91■■□□□ 1.9
VPS53-211ENST00000571805 GOLGA6L4A6NEF3 574 aa26.91■■□□□ 1.9
VPS53-211ENST00000571805 HSPD1P10809 573 aaKnown RBP26.91■■□□□ 1.9
VPS53-211ENST00000571805 RBM43Q6ZSC3 357 aaKnown RBP26.91■■□□□ 1.9
VPS53-211ENST00000571805 PUS3Q9BZE2 481 aaKnown RBP26.91■■□□□ 1.9
VPS53-211ENST00000571805 COL5A2P05997 1499 aaPredicted RBP26.91■■□□□ 1.9
VPS53-211ENST00000571805 XIRP1Q702N8 1843 aaKnown RBP26.9■■□□□ 1.9
VPS53-211ENST00000571805 SPEF2Q9C093 1822 aa26.9■■□□□ 1.9
VPS53-211ENST00000571805 IFIT1P09914 478 aaKnown RBP26.9■■□□□ 1.9
VPS53-211ENST00000571805 TYRO3Q06418 890 aa26.9■■□□□ 1.9
VPS53-211ENST00000571805 FAM200AQ8TCP9 573 aa26.9■■□□□ 1.9
VPS53-211ENST00000571805 ZSCAN16Q9H4T2 348 aaPredicted RBP26.9■■□□□ 1.9
VPS53-211ENST00000571805 DDX19AQ9NUU7 478 aaKnown RBP26.9■■□□□ 1.9
VPS53-211ENST00000571805 SHANK3Q9BYB0 1731 aa26.9■■□□□ 1.9
VPS53-211ENST00000571805 A0A0G2JLW4 131 aa26.9■■□□□ 1.9
VPS53-211ENST00000571805 RNF113AO15541 343 aaKnown RBP26.9■■□□□ 1.9
VPS53-211ENST00000571805 NSUN7Q8NE18 718 aaKnown RBP26.9■■□□□ 1.9
VPS53-211ENST00000571805 ISCA1Q9BUE6 129 aa26.89■■□□□ 1.9
VPS53-211ENST00000571805 TNMDQ9H2S6 317 aa26.89■■□□□ 1.9
VPS53-211ENST00000571805 MAST3O60307 1309 aa26.89■■□□□ 1.89
VPS53-211ENST00000571805 H3BQV1 296 aa26.89■■□□□ 1.89
VPS53-211ENST00000571805 CTDNEP1O95476 244 aa26.89■■□□□ 1.89
VPS53-211ENST00000571805 FGD1P98174 961 aa26.89■■□□□ 1.89
VPS53-211ENST00000571805 IFFO2Q5TF58 517 aa26.89■■□□□ 1.89
VPS53-211ENST00000571805 PPIL4Q8WUA2 492 aaKnown RBP eCLIP26.89■■□□□ 1.89
VPS53-211ENST00000571805 CLSTN2Q9H4D0 955 aa26.89■■□□□ 1.89
VPS53-211ENST00000571805 PLCB2Q00722 1185 aa26.88■■□□□ 1.89
VPS53-211ENST00000571805 E7EWF7 191 aa26.87■■□□□ 1.89
VPS53-211ENST00000571805 IL2RBP14784 551 aa26.87■■□□□ 1.89
VPS53-211ENST00000571805 APOBRQ0VD83 1088 aa26.87■■□□□ 1.89
VPS53-211ENST00000571805 CKAP2LQ8IYA6 745 aa26.87■■□□□ 1.89
VPS53-211ENST00000571805 SASS6Q6UVJ0 657 aa26.87■■□□□ 1.89
VPS53-211ENST00000571805 CARD10Q9BWT7 1032 aa26.87■■□□□ 1.89
VPS53-211ENST00000571805 NR1I2O75469 434 aa26.86■■□□□ 1.89
VPS53-211ENST00000571805 ADD1P35611 737 aaKnown RBP26.86■■□□□ 1.89
VPS53-211ENST00000571805 NOLC1Q14978 699 aaKnown RBP eCLIP26.86■■□□□ 1.89
VPS53-211ENST00000571805 UQCRHLA0A096LP55 91 aa26.86■■□□□ 1.89
VPS53-211ENST00000571805 UQCRHP07919 91 aa26.86■■□□□ 1.89
VPS53-211ENST00000571805 MYH15Q9Y2K3 1946 aa26.86■■□□□ 1.89
VPS53-211ENST00000571805 NAA16Q6N069 864 aaPredicted RBP26.85■■□□□ 1.89
VPS53-211ENST00000571805 M0R2C6 588 aa26.85■■□□□ 1.89
VPS53-211ENST00000571805 TCIRG1Q13488 830 aa26.85■■□□□ 1.89
VPS53-211ENST00000571805 CEP126Q9P2H0 1117 aa26.85■■□□□ 1.89
VPS53-211ENST00000571805 CFAP45Q9UL16 551 aa26.85■■□□□ 1.89
VPS53-211ENST00000571805 PTPDC1A2A3K4 754 aa26.83■■□□□ 1.89
VPS53-211ENST00000571805 HMGN5P82970 282 aaKnown RBP26.83■■□□□ 1.89
VPS53-211ENST00000571805 LUZP1Q86V48 1076 aa26.83■■□□□ 1.89
VPS53-211ENST00000571805 BICD2Q8TD16 824 aa26.83■■□□□ 1.89
VPS53-211ENST00000571805 OSBP2Q969R2 916 aa26.83■■□□□ 1.89
VPS53-211ENST00000571805 SPTLC3Q9NUV7 552 aa26.83■■□□□ 1.89
VPS53-211ENST00000571805 SOS2Q07890 1332 aaPredicted RBP26.83■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms