RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 PODXL2Q9NZ53 605 aa16.32■□□□□ 0.2
CLK3-224ENST00000568605 GPSM2P81274 684 aa16.31■□□□□ 0.2
CLK3-224ENST00000568605 KIAA2012Q0VF49 1180 aa16.31■□□□□ 0.2
CLK3-224ENST00000568605 AOC3Q16853 763 aa16.31■□□□□ 0.2
CLK3-224ENST00000568605 INTS3Q68E01 1043 aaKnown RBP16.31■□□□□ 0.2
CLK3-224ENST00000568605 SUCLG2Q96I99 432 aa16.31■□□□□ 0.2
CLK3-224ENST00000568605 GGA1Q9UJY5 639 aa16.31■□□□□ 0.2
CLK3-224ENST00000568605 UFL1O94874 794 aa16.3■□□□□ 0.2
CLK3-224ENST00000568605 WASHC4Q2M389 1173 aa16.3■□□□□ 0.2
CLK3-224ENST00000568605 SLC51AQ86UW1 340 aa16.3■□□□□ 0.2
CLK3-224ENST00000568605 C16orf71Q8IYS4 520 aaPredicted RBP16.3■□□□□ 0.2
CLK3-224ENST00000568605 ANKRD2Q9GZV1 360 aa16.3■□□□□ 0.2
CLK3-224ENST00000568605 USP44Q9H0E7 712 aa16.3■□□□□ 0.2
CLK3-224ENST00000568605 FZD9O00144 591 aa16.29■□□□□ 0.2
CLK3-224ENST00000568605 GNAI3P08754 354 aa16.29■□□□□ 0.2
CLK3-224ENST00000568605 RABL6Q3YEC7 729 aaPredicted RBP16.29■□□□□ 0.2
CLK3-224ENST00000568605 BICC1Q9H694 974 aaKnown RBP16.29■□□□□ 0.2
CLK3-224ENST00000568605 MED23Q9ULK4 1368 aa16.28■□□□□ 0.2
CLK3-224ENST00000568605 ZNF541Q9H0D2 1346 aa16.28■□□□□ 0.2
CLK3-224ENST00000568605 MS4A1P11836 297 aa16.28■□□□□ 0.2
CLK3-224ENST00000568605 ATP2B4P23634 1241 aa16.28■□□□□ 0.2
CLK3-224ENST00000568605 EPHA10Q5JZY3 1008 aa16.28■□□□□ 0.2
CLK3-224ENST00000568605 TBC1D16Q8TBP0 767 aa16.28■□□□□ 0.2
CLK3-224ENST00000568605 NMRK2Q9NPI5 230 aa16.28■□□□□ 0.2
CLK3-224ENST00000568605 ECM29Q5VYK3 1845 aa16.27■□□□□ 0.2
CLK3-224ENST00000568605 IQCA1LA6NCM1 817 aa16.27■□□□□ 0.2
CLK3-224ENST00000568605 G3V3G9 751 aa16.27■□□□□ 0.2
CLK3-224ENST00000568605 KCNJ4P48050 445 aa16.27■□□□□ 0.2
CLK3-224ENST00000568605 DCAF8Q5TAQ9 597 aa16.27■□□□□ 0.2
CLK3-224ENST00000568605 GPC2Q8N158 579 aa16.27■□□□□ 0.2
CLK3-224ENST00000568605 CLUAP1Q96AJ1 413 aa16.27■□□□□ 0.2
CLK3-224ENST00000568605 KAZALD1Q96I82 304 aa16.27■□□□□ 0.2
CLK3-224ENST00000568605 ZC3H12CQ9C0D7 883 aaKnown RBP16.27■□□□□ 0.2
CLK3-224ENST00000568605 CNNM1Q9NRU3 951 aa16.27■□□□□ 0.2
CLK3-224ENST00000568605 ZNRF3Q9ULT6 936 aa16.27■□□□□ 0.2
CLK3-224ENST00000568605 MINPP1Q9UNW1 487 aa16.27■□□□□ 0.2
CLK3-224ENST00000568605 ADAMTSL1Q8N6G6 1762 aa16.26■□□□□ 0.19
CLK3-224ENST00000568605 VEGFAP15692 232 aaPredicted RBP16.26■□□□□ 0.19
CLK3-224ENST00000568605 LDHAL6AQ6ZMR3 332 aa16.26■□□□□ 0.19
CLK3-224ENST00000568605 DZIP1LQ8IYY4 767 aaKnown RBP16.26■□□□□ 0.19
CLK3-224ENST00000568605 YTHDC1Q96MU7 727 aaKnown RBP16.26■□□□□ 0.19
CLK3-224ENST00000568605 POLLQ9UGP5 575 aa16.26■□□□□ 0.19
CLK3-224ENST00000568605 RCAN3Q9UKA8 241 aa16.26■□□□□ 0.19
CLK3-224ENST00000568605 KIF3CO14782 793 aa16.25■□□□□ 0.19
CLK3-224ENST00000568605 RIMBP2O15034 1052 aa16.25■□□□□ 0.19
CLK3-224ENST00000568605 DDNO94850 711 aaPredicted RBP16.25■□□□□ 0.19
CLK3-224ENST00000568605 CHRNDQ07001 517 aa16.25■□□□□ 0.19
CLK3-224ENST00000568605 ANKRD44Q8N8A2 993 aa16.25■□□□□ 0.19
CLK3-224ENST00000568605 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.25■□□□□ 0.19
CLK3-224ENST00000568605 L3MBTL3Q96JM7 780 aaPredicted RBP16.25■□□□□ 0.19
CLK3-224ENST00000568605 MEIS3Q99687 375 aa16.25■□□□□ 0.19
CLK3-224ENST00000568605 LEMD3Q9Y2U8 911 aa16.25■□□□□ 0.19
CLK3-224ENST00000568605 TRPM7Q96QT4 1865 aa16.25■□□□□ 0.19
CLK3-224ENST00000568605 LMOD1P29536 600 aaPredicted RBP16.24■□□□□ 0.19
CLK3-224ENST00000568605 TMEM57Q8N5G2 664 aa16.24■□□□□ 0.19
CLK3-224ENST00000568605 RRAGCQ9HB90 399 aa16.24■□□□□ 0.19
CLK3-224ENST00000568605 LRRFIP2Q9Y608 721 aaKnown RBP16.24■□□□□ 0.19
CLK3-224ENST00000568605 GJA3Q9Y6H8 435 aa16.24■□□□□ 0.19
CLK3-224ENST00000568605 ZNF804BA4D1E1 1349 aa16.23■□□□□ 0.19
CLK3-224ENST00000568605 MROH5Q6ZUA9 1318 aa16.23■□□□□ 0.19
CLK3-224ENST00000568605 ECE2O60344 883 aa16.23■□□□□ 0.19
CLK3-224ENST00000568605 TOMM70O94826 608 aa16.23■□□□□ 0.19
CLK3-224ENST00000568605 TNIP1Q15025 636 aa16.23■□□□□ 0.19
CLK3-224ENST00000568605 CIAPIN1Q6FI81 312 aa16.23■□□□□ 0.19
CLK3-224ENST00000568605 ITPRIPQ8IWB1 547 aa16.23■□□□□ 0.19
CLK3-224ENST00000568605 ZNF594Q96JF6 807 aaPredicted RBP16.23■□□□□ 0.19
CLK3-224ENST00000568605 DBNDD1Q9H9R9 158 aa16.23■□□□□ 0.19
CLK3-224ENST00000568605 GPR101Q96P66 508 aaPredicted RBP16.22■□□□□ 0.19
CLK3-224ENST00000568605 HACL1Q9UJ83 578 aa16.22■□□□□ 0.19
CLK3-224ENST00000568605 TNNQ9UQP3 1299 aa16.22■□□□□ 0.19
CLK3-224ENST00000568605 GNAI2P04899 355 aa16.21■□□□□ 0.19
CLK3-224ENST00000568605 CXCL9Q07325 125 aa16.21■□□□□ 0.19
CLK3-224ENST00000568605 RBM46Q8TBY0 533 aaKnown RBP16.21■□□□□ 0.19
CLK3-224ENST00000568605 POLR2AP24928 1970 aaKnown RBP16.2■□□□□ 0.18
CLK3-224ENST00000568605 ZNF609O15014 1411 aa16.2■□□□□ 0.18
CLK3-224ENST00000568605 C1QTNF8P60827 252 aa16.2■□□□□ 0.18
CLK3-224ENST00000568605 PODNQ7Z5L7 613 aa16.2■□□□□ 0.18
CLK3-224ENST00000568605 FBXO3Q9UK99 471 aa16.2■□□□□ 0.18
CLK3-224ENST00000568605 YDJCA8MPS7 323 aa16.19■□□□□ 0.18
CLK3-224ENST00000568605 RAD17O75943 681 aa16.19■□□□□ 0.18
CLK3-224ENST00000568605 DOK7Q18PE1 504 aa16.19■□□□□ 0.18
CLK3-224ENST00000568605 METTL24Q5JXM2 366 aa16.19■□□□□ 0.18
CLK3-224ENST00000568605 CHMP4BQ9H444 224 aaKnown RBP16.19■□□□□ 0.18
CLK3-224ENST00000568605 PLIN1O60240 522 aa16.18■□□□□ 0.18
CLK3-224ENST00000568605 TAF5LO75529 589 aa16.18■□□□□ 0.18
CLK3-224ENST00000568605 RPS12P25398 132 aaKnown RBP16.18■□□□□ 0.18
CLK3-224ENST00000568605 EPHX2P34913 555 aa16.18■□□□□ 0.18
CLK3-224ENST00000568605 MTX1Q13505 466 aa16.18■□□□□ 0.18
CLK3-224ENST00000568605 ZNF804AQ7Z570 1209 aa16.18■□□□□ 0.18
CLK3-224ENST00000568605 PNMA8AQ86V59 439 aaPredicted RBP16.18■□□□□ 0.18
CLK3-224ENST00000568605 SMC1BQ8NDV3 1235 aa16.18■□□□□ 0.18
CLK3-224ENST00000568605 COA1Q9GZY4 146 aa16.18■□□□□ 0.18
CLK3-224ENST00000568605 EYA2O00167 538 aa16.17■□□□□ 0.18
CLK3-224ENST00000568605 SRGAP3O43295 1099 aa16.17■□□□□ 0.18
CLK3-224ENST00000568605 RLBP1P12271 317 aa16.17■□□□□ 0.18
CLK3-224ENST00000568605 SCNN1DP51172 638 aa16.17■□□□□ 0.18
CLK3-224ENST00000568605 FSTL1Q12841 308 aa16.17■□□□□ 0.18
CLK3-224ENST00000568605 UBE4AQ14139 1066 aa16.17■□□□□ 0.18
CLK3-224ENST00000568605 C15orf52Q6ZUT6 534 aaKnown RBP16.17■□□□□ 0.18
CLK3-224ENST00000568605 HELBQ8NG08 1087 aaPredicted RBP16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms