RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 RTN4Q9NQC3 1192 aaKnown RBP24.23■■□□□ 1.47
CLN3-230ENST00000568076 RBM27Q9P2N5 1060 aaKnown RBP24.23■■□□□ 1.47
CLN3-230ENST00000568076 ZSCAN22P10073 491 aaPredicted RBP24.23■■□□□ 1.47
CLN3-230ENST00000568076 GJB2P29033 226 aa24.23■■□□□ 1.47
CLN3-230ENST00000568076 IL6STP40189 918 aaPredicted RBP24.23■■□□□ 1.47
CLN3-230ENST00000568076 ZNF445P59923 1031 aa24.23■■□□□ 1.47
CLN3-230ENST00000568076 TOB2Q14106 344 aaPredicted RBP24.23■■□□□ 1.47
CLN3-230ENST00000568076 TTLL11Q8NHH1 800 aa24.23■■□□□ 1.47
CLN3-230ENST00000568076 TBC1D2BQ9UPU7 963 aa24.23■■□□□ 1.47
CLN3-230ENST00000568076 THRAP3Q9Y2W1 955 aaKnown RBP24.23■■□□□ 1.47
CLN3-230ENST00000568076 U3KPZ7 1027 aaPredicted RBP24.23■■□□□ 1.47
CLN3-230ENST00000568076 DDB1Q16531 1140 aa24.22■■□□□ 1.47
CLN3-230ENST00000568076 XAGE2Q96GT9 111 aa24.22■■□□□ 1.47
CLN3-230ENST00000568076 GREM2Q9H772 168 aa24.22■■□□□ 1.47
CLN3-230ENST00000568076 HELLSQ9NRZ9 838 aa24.22■■□□□ 1.47
CLN3-230ENST00000568076 RIC1Q4ADV7 1423 aa24.22■■□□□ 1.47
CLN3-230ENST00000568076 CYP21A2P08686 494 aa24.22■■□□□ 1.47
CLN3-230ENST00000568076 TAF7LQ5H9L4 462 aa24.22■■□□□ 1.47
CLN3-230ENST00000568076 ZMYM1Q5SVZ6 1142 aa24.22■■□□□ 1.47
CLN3-230ENST00000568076 DZIP3Q86Y13 1208 aaKnown RBP24.22■■□□□ 1.47
CLN3-230ENST00000568076 AKAP2Q9Y2D5 859 aa24.22■■□□□ 1.47
CLN3-230ENST00000568076 NUP98P52948 1817 aa24.21■■□□□ 1.47
CLN3-230ENST00000568076 ERVV-1B6SEH8 477 aa24.21■■□□□ 1.47
CLN3-230ENST00000568076 TICAM2Q86XR7 235 aa24.21■■□□□ 1.47
CLN3-230ENST00000568076 UBN2Q6ZU65 1347 aa24.21■■□□□ 1.47
CLN3-230ENST00000568076 ITGA6P23229 1130 aa24.2■■□□□ 1.46
CLN3-230ENST00000568076 CTSWP56202 376 aa24.2■■□□□ 1.46
CLN3-230ENST00000568076 KRT32Q14532 448 aa24.2■■□□□ 1.46
CLN3-230ENST00000568076 MARCH10Q8NA82 808 aaPredicted RBP24.2■■□□□ 1.46
CLN3-230ENST00000568076 ACSBG1Q96GR2 724 aa24.2■■□□□ 1.46
CLN3-230ENST00000568076 GDPD2Q9HCC8 539 aa24.2■■□□□ 1.46
CLN3-230ENST00000568076 TMEM63CQ9P1W3 806 aa24.2■■□□□ 1.46
CLN3-230ENST00000568076 RIPOR2Q9Y4F9 1068 aa24.2■■□□□ 1.46
CLN3-230ENST00000568076 SPEF2Q9C093 1822 aa24.2■■□□□ 1.46
CLN3-230ENST00000568076 IRS4O14654 1257 aaPredicted RBP24.2■■□□□ 1.46
CLN3-230ENST00000568076 ANKRD1Q15327 319 aa24.2■■□□□ 1.46
CLN3-230ENST00000568076 TRMT112Q9UI30 125 aaKnown RBP24.2■■□□□ 1.46
CLN3-230ENST00000568076 SLIT2O94813 1529 aa24.19■■□□□ 1.46
CLN3-230ENST00000568076 RNF113AO15541 343 aaKnown RBP24.18■■□□□ 1.46
CLN3-230ENST00000568076 CCDC158Q5M9N0 1113 aa24.18■■□□□ 1.46
CLN3-230ENST00000568076 INTS5Q6P9B9 1019 aaKnown RBP24.18■■□□□ 1.46
CLN3-230ENST00000568076 ZNF34Q8IZ26 560 aa24.18■■□□□ 1.46
CLN3-230ENST00000568076 NEK1Q96PY6 1258 aa24.18■■□□□ 1.46
CLN3-230ENST00000568076 MAST3O60307 1309 aa24.18■■□□□ 1.46
CLN3-230ENST00000568076 SPATA31A5Q5VU36 1347 aa24.18■■□□□ 1.46
CLN3-230ENST00000568076 SPATA31A7Q8IWB4 1347 aa24.18■■□□□ 1.46
CLN3-230ENST00000568076 NUTM2BA6NNL0 878 aaPredicted RBP24.18■■□□□ 1.46
CLN3-230ENST00000568076 NUTM2EB1AL46 878 aaPredicted RBP24.18■■□□□ 1.46
CLN3-230ENST00000568076 F13A1P00488 732 aa24.18■■□□□ 1.46
CLN3-230ENST00000568076 EIF5P55010 431 aaKnown RBP24.18■■□□□ 1.46
CLN3-230ENST00000568076 SCARF1Q14162 830 aa24.18■■□□□ 1.46
CLN3-230ENST00000568076 TTC39AQ5SRH9 613 aa24.18■■□□□ 1.46
CLN3-230ENST00000568076 NUTM2AQ8IVF1 878 aaPredicted RBP24.18■■□□□ 1.46
CLN3-230ENST00000568076 MTMR6Q9Y217 621 aa24.18■■□□□ 1.46
CLN3-230ENST00000568076 MBD3O95983 291 aa24.17■■□□□ 1.46
CLN3-230ENST00000568076 FKBP4Q02790 459 aaKnown RBP eCLIP24.17■■□□□ 1.46
CLN3-230ENST00000568076 USP48Q86UV5 1035 aa24.17■■□□□ 1.46
CLN3-230ENST00000568076 DSCC1Q9BVC3 393 aa24.17■■□□□ 1.46
CLN3-230ENST00000568076 GORABQ5T7V8 394 aa24.16■■□□□ 1.46
CLN3-230ENST00000568076 LDHAL6AQ6ZMR3 332 aa24.16■■□□□ 1.46
CLN3-230ENST00000568076 STOX1Q6ZVD7 989 aa24.16■■□□□ 1.46
CLN3-230ENST00000568076 A0A0G2JS52 829 aa24.16■■□□□ 1.46
CLN3-230ENST00000568076 ANKRD18BA2A2Z9 1011 aa24.16■■□□□ 1.46
CLN3-230ENST00000568076 GADD45BO75293 160 aaPredicted RBP24.16■■□□□ 1.46
CLN3-230ENST00000568076 MYH3P11055 1940 aa24.15■■□□□ 1.46
CLN3-230ENST00000568076 PDE8AO60658 829 aa24.15■■□□□ 1.46
CLN3-230ENST00000568076 HSPD1P10809 573 aaKnown RBP24.15■■□□□ 1.46
CLN3-230ENST00000568076 METTL24Q5JXM2 366 aa24.15■■□□□ 1.46
CLN3-230ENST00000568076 TMEM87AQ8NBN3 555 aa24.15■■□□□ 1.46
CLN3-230ENST00000568076 M0R2C6 588 aa24.14■■□□□ 1.46
CLN3-230ENST00000568076 CRKLP46109 303 aaKnown RBP24.14■■□□□ 1.46
CLN3-230ENST00000568076 ATP2B3Q16720 1220 aa24.14■■□□□ 1.46
CLN3-230ENST00000568076 VGLL2Q8N8G2 317 aa24.14■■□□□ 1.46
CLN3-230ENST00000568076 OSBP2Q969R2 916 aa24.14■■□□□ 1.46
CLN3-230ENST00000568076 CCDC87Q9NVE4 849 aa24.14■■□□□ 1.46
CLN3-230ENST00000568076 CNPY2Q9Y2B0 182 aa24.14■■□□□ 1.46
CLN3-230ENST00000568076 ATP6V1AP38606 617 aa24.14■■□□□ 1.45
CLN3-230ENST00000568076 TCHHQ07283 1943 aa24.13■■□□□ 1.45
CLN3-230ENST00000568076 LOC102724428A0A0B4J2F2 783 aa24.13■■□□□ 1.45
CLN3-230ENST00000568076 A0A0G2JLW4 131 aa24.13■■□□□ 1.45
CLN3-230ENST00000568076 ZAP70P43403 619 aa24.13■■□□□ 1.45
CLN3-230ENST00000568076 SIK1P57059 783 aa24.13■■□□□ 1.45
CLN3-230ENST00000568076 ITPK1Q13572 414 aa24.13■■□□□ 1.45
CLN3-230ENST00000568076 PI16Q6UXB8 463 aa24.13■■□□□ 1.45
CLN3-230ENST00000568076 STK3Q13188 491 aa24.12■■□□□ 1.45
CLN3-230ENST00000568076 BARGINQ6ZT62 677 aa24.12■■□□□ 1.45
CLN3-230ENST00000568076 Q6ZUG5 572 aa24.12■■□□□ 1.45
CLN3-230ENST00000568076 CNNM1Q9NRU3 951 aa24.12■■□□□ 1.45
CLN3-230ENST00000568076 SUSD4Q5VX71 490 aa24.11■■□□□ 1.45
CLN3-230ENST00000568076 RREB1Q92766 1687 aa24.1■■□□□ 1.45
CLN3-230ENST00000568076 NWD2Q9ULI1 1742 aa24.1■■□□□ 1.45
CLN3-230ENST00000568076 ABCC12Q96J65 1359 aa24.1■■□□□ 1.45
CLN3-230ENST00000568076 SYCE3A1L190 88 aa24.1■■□□□ 1.45
CLN3-230ENST00000568076 NASPP49321 788 aaPredicted RBP24.1■■□□□ 1.45
CLN3-230ENST00000568076 PIP4K2BP78356 416 aa24.1■■□□□ 1.45
CLN3-230ENST00000568076 LRRC2Q9BYS8 371 aa24.1■■□□□ 1.45
CLN3-230ENST00000568076 LRP5O75197 1615 aa24.1■■□□□ 1.45
CLN3-230ENST00000568076 VPS37CA5D8V6 355 aaPredicted RBP24.09■■□□□ 1.45
CLN3-230ENST00000568076 FOXP2O15409 715 aa24.09■■□□□ 1.45
CLN3-230ENST00000568076 CAMTA2O94983 1202 aa24.09■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms