RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 QSER1Q2KHR3 1735 aa13.74□□□□□ -0.21
USP3-218ENST00000560202 ERC2O15083 957 aa13.73□□□□□ -0.21
USP3-218ENST00000560202 SDSP20132 328 aa13.73□□□□□ -0.21
USP3-218ENST00000560202 TIMM10P62072 90 aa13.73□□□□□ -0.21
USP3-218ENST00000560202 DDX46Q7L014 1031 aaKnown RBP13.73□□□□□ -0.21
USP3-218ENST00000560202 CELF1Q92879 486 aaKnown RBP13.73□□□□□ -0.21
USP3-218ENST00000560202 NEUROD6Q96NK8 337 aa13.73□□□□□ -0.21
USP3-218ENST00000560202 DBNDD2Q9BQY9 259 aa13.73□□□□□ -0.21
USP3-218ENST00000560202 TNRC6CQ9HCJ0 1690 aaKnown RBP13.73□□□□□ -0.21
USP3-218ENST00000560202 A0A1B0GUL7 405 aa13.72□□□□□ -0.21
USP3-218ENST00000560202 GLRX3O76003 335 aaKnown RBP13.72□□□□□ -0.21
USP3-218ENST00000560202 PDE8BO95263 885 aa13.72□□□□□ -0.21
USP3-218ENST00000560202 RPS8P62241 208 aaKnown RBP13.72□□□□□ -0.21
USP3-218ENST00000560202 CRY2Q49AN0 593 aa13.72□□□□□ -0.21
USP3-218ENST00000560202 VGLL2Q8N8G2 317 aa13.72□□□□□ -0.21
USP3-218ENST00000560202 PDGFDQ9GZP0 370 aaPredicted RBP13.72□□□□□ -0.21
USP3-218ENST00000560202 BSDC1Q9NW68 430 aaPredicted RBP13.72□□□□□ -0.21
USP3-218ENST00000560202 ZNF609O15014 1411 aa13.72□□□□□ -0.21
USP3-218ENST00000560202 KLRG2A4D1S0 409 aaPredicted RBP13.72□□□□□ -0.21
USP3-218ENST00000560202 BRIP1Q9BX63 1249 aa13.72□□□□□ -0.21
USP3-218ENST00000560202 ATP2B3Q16720 1220 aa13.71□□□□□ -0.21
USP3-218ENST00000560202 HELBQ8NG08 1087 aaPredicted RBP13.71□□□□□ -0.21
USP3-218ENST00000560202 SLC16A10Q8TF71 515 aa13.71□□□□□ -0.21
USP3-218ENST00000560202 RPGRQ92834 1020 aaKnown RBP13.71□□□□□ -0.21
USP3-218ENST00000560202 COL4A1P02462 1669 aa13.71□□□□□ -0.21
USP3-218ENST00000560202 TRIM6-TRIM34B2RNG4 842 aa13.7□□□□□ -0.22
USP3-218ENST00000560202 CHRNDQ07001 517 aa13.7□□□□□ -0.22
USP3-218ENST00000560202 GRAPQ13588 217 aa13.7□□□□□ -0.22
USP3-218ENST00000560202 GRAPLQ8TC17 118 aaPredicted RBP13.7□□□□□ -0.22
USP3-218ENST00000560202 NRXN2Q9P2S2 1712 aa13.7□□□□□ -0.22
USP3-218ENST00000560202 CDC45O75419 566 aa13.69□□□□□ -0.22
USP3-218ENST00000560202 TAF5LO75529 589 aa13.69□□□□□ -0.22
USP3-218ENST00000560202 ATP5JP18859 108 aa13.69□□□□□ -0.22
USP3-218ENST00000560202 PUM3Q15397 648 aaKnown RBP13.69□□□□□ -0.22
USP3-218ENST00000560202 XAGE2Q96GT9 111 aa13.69□□□□□ -0.22
USP3-218ENST00000560202 RBM17Q96I25 401 aaKnown RBP13.69□□□□□ -0.22
USP3-218ENST00000560202 MINPP1Q9UNW1 487 aa13.69□□□□□ -0.22
USP3-218ENST00000560202 MAP4K4O95819 1239 aaPredicted RBP13.69□□□□□ -0.22
USP3-218ENST00000560202 FGFR2P21802 821 aa13.69□□□□□ -0.22
USP3-218ENST00000560202 ADORA1P30542 326 aa13.69□□□□□ -0.22
USP3-218ENST00000560202 HOXA10P31260 410 aaPredicted RBP13.69□□□□□ -0.22
USP3-218ENST00000560202 PDE6BP35913 854 aa13.69□□□□□ -0.22
USP3-218ENST00000560202 LPIN2Q92539 896 aa13.69□□□□□ -0.22
USP3-218ENST00000560202 RILPL2Q969X0 211 aa13.69□□□□□ -0.22
USP3-218ENST00000560202 BOLA2Q9H3K6 86 aa13.69□□□□□ -0.22
USP3-218ENST00000560202 CASZ1Q86V15 1759 aa13.69□□□□□ -0.22
USP3-218ENST00000560202 CCDC158Q5M9N0 1113 aa13.68□□□□□ -0.22
USP3-218ENST00000560202 GORABQ5T7V8 394 aa13.68□□□□□ -0.22
USP3-218ENST00000560202 TBC1D9Q6ZT07 1266 aa13.68□□□□□ -0.22
USP3-218ENST00000560202 CRAMP1Q96RY5 1269 aa13.68□□□□□ -0.22
USP3-218ENST00000560202 SEC24BO95487 1268 aa13.67□□□□□ -0.22
USP3-218ENST00000560202 SLC5A1P13866 664 aa13.67□□□□□ -0.22
USP3-218ENST00000560202 CNTROBQ8N137 903 aa13.67□□□□□ -0.22
USP3-218ENST00000560202 SNAP23O00161 211 aa13.66□□□□□ -0.22
USP3-218ENST00000560202 SRGNP10124 158 aa13.66□□□□□ -0.22
USP3-218ENST00000560202 ANKRD2Q9GZV1 360 aa13.66□□□□□ -0.22
USP3-218ENST00000560202 SPEF2Q9C093 1822 aa13.66□□□□□ -0.22
USP3-218ENST00000560202 BBOX1O75936 387 aa13.66□□□□□ -0.22
USP3-218ENST00000560202 IFIT1P09914 478 aaKnown RBP13.66□□□□□ -0.22
USP3-218ENST00000560202 NPR1P16066 1061 aa13.66□□□□□ -0.22
USP3-218ENST00000560202 TTC39AQ5SRH9 613 aa13.66□□□□□ -0.22
USP3-218ENST00000560202 CASC1Q6TDU7 716 aa13.66□□□□□ -0.22
USP3-218ENST00000560202 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.66□□□□□ -0.22
USP3-218ENST00000560202 EVI5LQ96CN4 794 aa13.66□□□□□ -0.22
USP3-218ENST00000560202 HAUS7Q99871 368 aa13.66□□□□□ -0.22
USP3-218ENST00000560202 TAF1P21675 1872 aa13.65□□□□□ -0.22
USP3-218ENST00000560202 UBE4AQ14139 1066 aa13.65□□□□□ -0.22
USP3-218ENST00000560202 R3HDM1Q15032 1099 aaKnown RBP13.65□□□□□ -0.22
USP3-218ENST00000560202 ANKRD31Q8N7Z5 1873 aa13.64□□□□□ -0.23
USP3-218ENST00000560202 CCDC102BQ68D86 513 aa13.64□□□□□ -0.23
USP3-218ENST00000560202 MASTLQ96GX5 879 aa13.64□□□□□ -0.23
USP3-218ENST00000560202 ZNF512BQ96KM6 892 aaPredicted RBP13.64□□□□□ -0.23
USP3-218ENST00000560202 DNAJC2Q99543 621 aaKnown RBP13.64□□□□□ -0.23
USP3-218ENST00000560202 H0YIN7 160 aa13.63□□□□□ -0.23
USP3-218ENST00000560202 ZBTB7AO95365 584 aa13.63□□□□□ -0.23
USP3-218ENST00000560202 CHMLP26374 656 aa13.63□□□□□ -0.23
USP3-218ENST00000560202 ALDH1B1P30837 517 aa13.63□□□□□ -0.23
USP3-218ENST00000560202 DEKP35659 375 aaKnown RBP13.63□□□□□ -0.23
USP3-218ENST00000560202 TMC4Q7Z404 712 aa13.63□□□□□ -0.23
USP3-218ENST00000560202 C2CD5Q86YS7 1000 aa13.63□□□□□ -0.23
USP3-218ENST00000560202 WTIPA6NIX2 430 aaPredicted RBP13.63□□□□□ -0.23
USP3-218ENST00000560202 PRKCSHP14314 528 aaPredicted RBP13.63□□□□□ -0.23
USP3-218ENST00000560202 PHKA1P46020 1223 aa13.63□□□□□ -0.23
USP3-218ENST00000560202 KCNJ4P48050 445 aa13.63□□□□□ -0.23
USP3-218ENST00000560202 MFAP1P55081 439 aaKnown RBP13.63□□□□□ -0.23
USP3-218ENST00000560202 EDC3Q96F86 508 aaKnown RBP13.63□□□□□ -0.23
USP3-218ENST00000560202 MTFR1LQ9H019 292 aa13.63□□□□□ -0.23
USP3-218ENST00000560202 NDUFB9Q9Y6M9 179 aa13.63□□□□□ -0.23
USP3-218ENST00000560202 PPEF1O14829 653 aaPredicted RBP13.62□□□□□ -0.23
USP3-218ENST00000560202 EIF5BO60841 1220 aaKnown RBP13.62□□□□□ -0.23
USP3-218ENST00000560202 UQCRFS1P1P0C7P4 283 aa13.62□□□□□ -0.23
USP3-218ENST00000560202 ARID4AP29374 1257 aaPredicted RBP13.62□□□□□ -0.23
USP3-218ENST00000560202 SCARF1Q14162 830 aa13.62□□□□□ -0.23
USP3-218ENST00000560202 SLC51AQ86UW1 340 aa13.62□□□□□ -0.23
USP3-218ENST00000560202 FSD1Q9BTV5 496 aa13.62□□□□□ -0.23
USP3-218ENST00000560202 UPF2Q9HAU5 1272 aaKnown RBP13.62□□□□□ -0.23
USP3-218ENST00000560202 PAG1Q9NWQ8 432 aa13.62□□□□□ -0.23
USP3-218ENST00000560202 ANKIB1Q9P2G1 1089 aa13.62□□□□□ -0.23
USP3-218ENST00000560202 ATF5Q9Y2D1 282 aaPredicted RBP13.62□□□□□ -0.23
USP3-218ENST00000560202 LEMD3Q9Y2U8 911 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms