RNA–Protein interactions for RNA: ENST00000557702.5

PABPN1-208, Transcript of poly(A) binding protein nuclear 1, human

TSL 2 BASIC

Gene PABPN1, Length 778 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PABPN1-208	ENST00000557702	ZNF280A	P59817	542 aa	Predicted RBP	12.57	□□□□□ -0.4
PABPN1-208	ENST00000557702	PRAMEF18	Q5VWM3	479 aa		12.57	□□□□□ -0.4
PABPN1-208	ENST00000557702	NECTIN2	Q92692	538 aa		12.57	□□□□□ -0.4
PABPN1-208	ENST00000557702	ZNF333	Q96JL9	665 aa		12.57	□□□□□ -0.4
PABPN1-208	ENST00000557702	EYA3	Q99504	573 aa		12.57	□□□□□ -0.4
PABPN1-208	ENST00000557702	EFCC1	Q9HA90	598 aa		12.57	□□□□□ -0.4
PABPN1-208	ENST00000557702	SPRYD7	Q5W111	196 aa		12.56	□□□□□ -0.4
PABPN1-208	ENST00000557702	MCM10	Q7L590	875 aa		12.56	□□□□□ -0.4
PABPN1-208	ENST00000557702	IFNL1	Q8IU54	200 aa		12.56	□□□□□ -0.4
PABPN1-208	ENST00000557702	CD99L2	Q8TCZ2	262 aa		12.56	□□□□□ -0.4
PABPN1-208	ENST00000557702	SCAF8	Q9UPN6	1271 aa	Known RBP	12.56	□□□□□ -0.4
PABPN1-208	ENST00000557702	MANSC4	A6NHS7	340 aa	Predicted RBP	12.55	□□□□□ -0.4
PABPN1-208	ENST00000557702		G3V3G9	751 aa		12.55	□□□□□ -0.4
PABPN1-208	ENST00000557702	HCLS1	P14317	486 aa	Predicted RBP	12.55	□□□□□ -0.4
PABPN1-208	ENST00000557702	DCAF8	Q5TAQ9	597 aa		12.55	□□□□□ -0.4
PABPN1-208	ENST00000557702	ARMC9	Q7Z3E5	817 aa		12.55	□□□□□ -0.4
PABPN1-208	ENST00000557702	AGBL3	Q8NEM8	1001 aa		12.55	□□□□□ -0.4
PABPN1-208	ENST00000557702	DPF3	Q92784	378 aa		12.55	□□□□□ -0.4
PABPN1-208	ENST00000557702	PHACTR3	Q96KR7	559 aa		12.55	□□□□□ -0.4
PABPN1-208	ENST00000557702	MYOZ2	Q9NPC6	264 aa		12.55	□□□□□ -0.4
PABPN1-208	ENST00000557702	POLL	Q9UGP5	575 aa		12.55	□□□□□ -0.4
PABPN1-208	ENST00000557702	PTPN12	Q05209	780 aa	Known RBP	12.54	□□□□□ -0.4
PABPN1-208	ENST00000557702	SLC9C1	Q4G0N8	1177 aa		12.54	□□□□□ -0.4
PABPN1-208	ENST00000557702	AMER1	Q5JTC6	1135 aa	Predicted RBP	12.54	□□□□□ -0.4
PABPN1-208	ENST00000557702	ZC3H12C	Q9C0D7	883 aa	Known RBP	12.54	□□□□□ -0.4
PABPN1-208	ENST00000557702	DUOX1	Q9NRD9	1551 aa		12.53	□□□□□ -0.4
PABPN1-208	ENST00000557702	USP17L8	P0C7I0	530 aa		12.53	□□□□□ -0.4
PABPN1-208	ENST00000557702	SP3	Q02447	781 aa		12.53	□□□□□ -0.4
PABPN1-208	ENST00000557702	TAF7	Q15545	349 aa	Predicted RBP	12.53	□□□□□ -0.4
PABPN1-208	ENST00000557702	RSBN1L	Q6PCB5	846 aa	Predicted RBP	12.53	□□□□□ -0.4
PABPN1-208	ENST00000557702	PRKAR2B	P31323	418 aa		12.52	□□□□□ -0.41
PABPN1-208	ENST00000557702	GPSM2	P81274	684 aa		12.52	□□□□□ -0.41
PABPN1-208	ENST00000557702	ARHGEF6	Q15052	776 aa		12.52	□□□□□ -0.41
PABPN1-208	ENST00000557702	OTUD7B	Q6GQQ9	843 aa		12.52	□□□□□ -0.41
PABPN1-208	ENST00000557702	PRO3102	Q9H379	93 aa		12.52	□□□□□ -0.41
PABPN1-208	ENST00000557702	MIS18A	Q9NYP9	233 aa		12.52	□□□□□ -0.41
PABPN1-208	ENST00000557702	ZNF609	O15014	1411 aa		12.52	□□□□□ -0.41
PABPN1-208	ENST00000557702	PRKG1	Q13976	671 aa		12.51	□□□□□ -0.41
PABPN1-208	ENST00000557702	DCTN1	Q14203	1278 aa		12.51	□□□□□ -0.41
PABPN1-208	ENST00000557702	LDLRAD1	Q5T700	205 aa		12.51	□□□□□ -0.41
PABPN1-208	ENST00000557702	TBC1D16	Q8TBP0	767 aa		12.51	□□□□□ -0.41
PABPN1-208	ENST00000557702	SLC10A4	Q96EP9	437 aa		12.51	□□□□□ -0.41
PABPN1-208	ENST00000557702		A0A1W2PPC1	479 aa		12.5	□□□□□ -0.41
PABPN1-208	ENST00000557702	IGF2BP3	O00425	579 aa	Known RBP eCLIP	12.5	□□□□□ -0.41
PABPN1-208	ENST00000557702	HTATSF1	O43719	755 aa	Known RBP	12.5	□□□□□ -0.41
PABPN1-208	ENST00000557702	MYC	P01106	439 aa	Predicted RBP	12.5	□□□□□ -0.41
PABPN1-208	ENST00000557702	COL25A1	Q9BXS0	654 aa	Predicted RBP	12.5	□□□□□ -0.41
PABPN1-208	ENST00000557702	TRMT112	Q9UI30	125 aa	Known RBP	12.5	□□□□□ -0.41
PABPN1-208	ENST00000557702	ANGEL1	Q9UNK9	670 aa	Known RBP	12.5	□□□□□ -0.41
PABPN1-208	ENST00000557702	SH3TC1	Q8TE82	1336 aa		12.5	□□□□□ -0.41
PABPN1-208	ENST00000557702	ANKRD36C	Q5JPF3	1778 aa		12.49	□□□□□ -0.41
PABPN1-208	ENST00000557702	WTIP	A6NIX2	430 aa	Predicted RBP	12.49	□□□□□ -0.41
PABPN1-208	ENST00000557702	ZBTB48	P10074	688 aa	Predicted RBP	12.49	□□□□□ -0.41
PABPN1-208	ENST00000557702	CRHR2	Q13324	411 aa		12.49	□□□□□ -0.41
PABPN1-208	ENST00000557702	NBPF9	Q3BBW0	867 aa		12.49	□□□□□ -0.41
PABPN1-208	ENST00000557702	HSP90AB3P	Q58FF7	597 aa		12.49	□□□□□ -0.41
PABPN1-208	ENST00000557702	NLRP10	Q86W26	655 aa		12.49	□□□□□ -0.41
PABPN1-208	ENST00000557702	PNISR	Q8TF01	805 aa	Known RBP	12.49	□□□□□ -0.41
PABPN1-208	ENST00000557702	CELF1	Q92879	486 aa	Known RBP	12.49	□□□□□ -0.41
PABPN1-208	ENST00000557702	GML	Q99445	158 aa		12.49	□□□□□ -0.41
PABPN1-208	ENST00000557702	RSPH6A	Q9H0K4	717 aa		12.49	□□□□□ -0.41
PABPN1-208	ENST00000557702	NR2E3	Q9Y5X4	410 aa		12.49	□□□□□ -0.41
PABPN1-208	ENST00000557702	PTCH2	Q9Y6C5	1203 aa		12.49	□□□□□ -0.41
PABPN1-208	ENST00000557702	ANKRD13D	Q6ZTN6	518 aa		12.48	□□□□□ -0.41
PABPN1-208	ENST00000557702	LRCH3	Q96II8	777 aa		12.48	□□□□□ -0.41
PABPN1-208	ENST00000557702	HTATIP2	Q9BUP3	242 aa		12.48	□□□□□ -0.41
PABPN1-208	ENST00000557702	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	12.48	□□□□□ -0.41
PABPN1-208	ENST00000557702	SCN9A	Q15858	1988 aa		12.48	□□□□□ -0.41
PABPN1-208	ENST00000557702	LAMA3	Q16787	3333 aa		12.48	□□□□□ -0.41
PABPN1-208	ENST00000557702	TAF1	P21675	1872 aa		12.47	□□□□□ -0.41
PABPN1-208	ENST00000557702	ERBB4	Q15303	1308 aa		12.47	□□□□□ -0.41
PABPN1-208	ENST00000557702	USP17L3	A6NCW0	530 aa		12.47	□□□□□ -0.41
PABPN1-208	ENST00000557702	USP17L4	A6NCW7	530 aa		12.47	□□□□□ -0.41
PABPN1-208	ENST00000557702	SOX1	O00570	391 aa	Predicted RBP	12.47	□□□□□ -0.41
PABPN1-208	ENST00000557702	CAP1	Q01518	475 aa		12.47	□□□□□ -0.41
PABPN1-208	ENST00000557702	USP17L1	Q7RTZ2	530 aa		12.47	□□□□□ -0.41
PABPN1-208	ENST00000557702	OGFOD1	Q8N543	542 aa		12.47	□□□□□ -0.41
PABPN1-208	ENST00000557702	WNK4	Q96J92	1243 aa		12.47	□□□□□ -0.41
PABPN1-208	ENST00000557702	LAMB4	A4D0S4	1761 aa		12.46	□□□□□ -0.41
PABPN1-208	ENST00000557702	LRRC37A	A6NMS7	1700 aa		12.46	□□□□□ -0.41
PABPN1-208	ENST00000557702	WNT10B	O00744	389 aa		12.46	□□□□□ -0.41
PABPN1-208	ENST00000557702	UFL1	O94874	794 aa		12.46	□□□□□ -0.41
PABPN1-208	ENST00000557702	EIF4A1	P60842	406 aa	Known RBP	12.46	□□□□□ -0.41
PABPN1-208	ENST00000557702	EIF4G2	P78344	907 aa	Known RBP eCLIP	12.46	□□□□□ -0.41
PABPN1-208	ENST00000557702	SF3B3	Q15393	1217 aa	Known RBP	12.46	□□□□□ -0.41
PABPN1-208	ENST00000557702	CC2D1B	Q5T0F9	858 aa	Known RBP	12.46	□□□□□ -0.41
PABPN1-208	ENST00000557702	THUMPD2	Q9BTF0	503 aa	Known RBP	12.46	□□□□□ -0.41
PABPN1-208	ENST00000557702	PODXL2	Q9NZ53	605 aa		12.46	□□□□□ -0.41
PABPN1-208	ENST00000557702	ANKIB1	Q9P2G1	1089 aa		12.46	□□□□□ -0.41
PABPN1-208	ENST00000557702	DDX60	Q8IY21	1712 aa	Known RBP	12.45	□□□□□ -0.42
PABPN1-208	ENST00000557702	RPS8	P62241	208 aa	Known RBP	12.45	□□□□□ -0.42
PABPN1-208	ENST00000557702	GPR153	Q6NV75	609 aa		12.45	□□□□□ -0.42
PABPN1-208	ENST00000557702	APOBEC3F	Q8IUX4	373 aa	Known RBP	12.45	□□□□□ -0.42
PABPN1-208	ENST00000557702	NKX2-3	Q8TAU0	364 aa		12.45	□□□□□ -0.42
PABPN1-208	ENST00000557702	SH3TC2	Q8TF17	1288 aa		12.45	□□□□□ -0.42
PABPN1-208	ENST00000557702	GGA1	Q9UJY5	639 aa		12.45	□□□□□ -0.42
PABPN1-208	ENST00000557702	STXBP5L	Q9Y2K9	1186 aa		12.45	□□□□□ -0.42
PABPN1-208	ENST00000557702	LAMB2	P55268	1798 aa		12.45	□□□□□ -0.42
PABPN1-208	ENST00000557702	COL3A1	P02461	1466 aa	Predicted RBP	12.45	□□□□□ -0.42
PABPN1-208	ENST00000557702	PPP1R12B	O60237	982 aa	Predicted RBP	12.44	□□□□□ -0.42

Retrieved 100 of 20,778 RNA–protein pairs in 52 ms