RNA–Protein interactions for RNA: ENST00000554429.5

PRPF39-206, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 5

Gene PRPF39, Length 2,977 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-206ENST00000554429 SLC12A5Q9H2X9 1139 aa3.48□□□□□ -1.85
PRPF39-206ENST00000554429 THSD7BQ9C0I4 1608 aa3.47□□□□□ -1.85
PRPF39-206ENST00000554429 TRIM6-TRIM34B2RNG4 842 aa3.47□□□□□ -1.85
PRPF39-206ENST00000554429 CLGNO14967 610 aa3.47□□□□□ -1.85
PRPF39-206ENST00000554429 FYB1O15117 783 aa3.47□□□□□ -1.85
PRPF39-206ENST00000554429 GPR162Q16538 588 aa3.47□□□□□ -1.85
PRPF39-206ENST00000554429 NBPF6Q5VWK0 638 aa3.47□□□□□ -1.85
PRPF39-206ENST00000554429 JMYQ8N9B5 988 aa3.47□□□□□ -1.85
PRPF39-206ENST00000554429 GPATCH3Q96I76 525 aa3.47□□□□□ -1.85
PRPF39-206ENST00000554429 NBPF4Q96M43 638 aa3.47□□□□□ -1.85
PRPF39-206ENST00000554429 CARD11Q9BXL7 1154 aa3.47□□□□□ -1.85
PRPF39-206ENST00000554429 TFCP2L1Q9NZI6 479 aa3.47□□□□□ -1.85
PRPF39-206ENST00000554429 SERPINA10Q9UK55 444 aa3.47□□□□□ -1.85
PRPF39-206ENST00000554429 FER1L6Q2WGJ9 1857 aa3.47□□□□□ -1.85
PRPF39-206ENST00000554429 TATP17735 454 aaPredicted RBP3.47□□□□□ -1.85
PRPF39-206ENST00000554429 APLP1P51693 650 aa3.47□□□□□ -1.85
PRPF39-206ENST00000554429 ARMCX6Q7L4S7 300 aa3.47□□□□□ -1.85
PRPF39-206ENST00000554429 RBM46Q8TBY0 533 aaKnown RBP3.47□□□□□ -1.85
PRPF39-206ENST00000554429 ZNF622Q969S3 477 aaKnown RBP eCLIP3.47□□□□□ -1.851e-6■□□□□ 11.2
PRPF39-206ENST00000554429 IVNS1ABPQ9Y6Y0 642 aa3.47□□□□□ -1.85
PRPF39-206ENST00000554429 ADAMTSL1Q8N6G6 1762 aa3.46□□□□□ -1.86
PRPF39-206ENST00000554429 ERVV-2B6SEH9 535 aa3.46□□□□□ -1.86
PRPF39-206ENST00000554429 CYP27B1O15528 508 aa3.46□□□□□ -1.86
PRPF39-206ENST00000554429 RNF25Q96BH1 459 aaPredicted RBP3.46□□□□□ -1.86
PRPF39-206ENST00000554429 MTA3Q9BTC8 594 aa3.46□□□□□ -1.86
PRPF39-206ENST00000554429 PRR14Q9BWN1 585 aa3.46□□□□□ -1.86
PRPF39-206ENST00000554429 GABBR1Q9UBS5 961 aa3.46□□□□□ -1.86
PRPF39-206ENST00000554429 NXF1Q9UBU9 619 aaKnown RBP3.46□□□□□ -1.86
PRPF39-206ENST00000554429 ANKRD31Q8N7Z5 1873 aa3.46□□□□□ -1.86
PRPF39-206ENST00000554429 FSTL1Q12841 308 aa3.46□□□□□ -1.86
PRPF39-206ENST00000554429 SKIV2LQ15477 1246 aaKnown RBP3.46□□□□□ -1.86
PRPF39-206ENST00000554429 PROX2Q3B8N5 592 aa3.46□□□□□ -1.86
PRPF39-206ENST00000554429 ZFYVE27Q5T4F4 411 aa3.46□□□□□ -1.86
PRPF39-206ENST00000554429 TYW1BQ6NUM6 668 aa3.46□□□□□ -1.86
PRPF39-206ENST00000554429 SUGP2Q8IX01 1082 aaKnown RBP eCLIP3.46□□□□□ -1.862e-6■■■□□ 14.7
PRPF39-206ENST00000554429 MPNDQ8N594 471 aa3.46□□□□□ -1.86
PRPF39-206ENST00000554429 DNAJC5GQ8N7S2 189 aa3.46□□□□□ -1.86
PRPF39-206ENST00000554429 WDR3Q9UNX4 943 aaKnown RBP eCLIP3.46□□□□□ -1.86
PRPF39-206ENST00000554429 KCPQ6ZWJ8 1503 aa3.46□□□□□ -1.86
PRPF39-206ENST00000554429 IGSF1Q8N6C5 1336 aa3.46□□□□□ -1.86
PRPF39-206ENST00000554429 SCN4AP35499 1836 aa3.46□□□□□ -1.86
PRPF39-206ENST00000554429 PARNO95453 639 aaKnown RBP3.45□□□□□ -1.86
PRPF39-206ENST00000554429 AMPHP49418 695 aa3.45□□□□□ -1.86
PRPF39-206ENST00000554429 TMF1P82094 1093 aa3.45□□□□□ -1.86
PRPF39-206ENST00000554429 KRBA2Q6ZNG9 492 aa3.45□□□□□ -1.86
PRPF39-206ENST00000554429 TSHZ1Q6ZSZ6 1077 aa3.45□□□□□ -1.86
PRPF39-206ENST00000554429 SREK1Q8WXA9 508 aaKnown RBP3.45□□□□□ -1.86
PRPF39-206ENST00000554429 SIN3AQ96ST3 1273 aa3.45□□□□□ -1.86
PRPF39-206ENST00000554429 TMX4Q9H1E5 349 aaPredicted RBP3.45□□□□□ -1.86
PRPF39-206ENST00000554429 SPG7Q9UQ90 795 aa3.45□□□□□ -1.86
PRPF39-206ENST00000554429 CCDC88AQ3V6T2 1871 aa3.45□□□□□ -1.86
PRPF39-206ENST00000554429 SH3BP5O60239 455 aa3.45□□□□□ -1.86
PRPF39-206ENST00000554429 HSP90AB1P08238 724 aaKnown RBP3.45□□□□□ -1.86
PRPF39-206ENST00000554429 MYBPC2Q14324 1141 aa3.45□□□□□ -1.86
PRPF39-206ENST00000554429 SLC51AQ86UW1 340 aa3.45□□□□□ -1.86
PRPF39-206ENST00000554429 LINC00116Q8NCU8 138 aa3.45□□□□□ -1.86
PRPF39-206ENST00000554429 RAPGEF4Q8WZA2 1011 aa3.45□□□□□ -1.86
PRPF39-206ENST00000554429 PIGBQ92521 554 aa3.45□□□□□ -1.86
PRPF39-206ENST00000554429 PMM1Q92871 262 aa3.45□□□□□ -1.86
PRPF39-206ENST00000554429 LOC102724428A0A0B4J2F2 783 aa3.45□□□□□ -1.86
PRPF39-206ENST00000554429 CREB3O43889 395 aa3.45□□□□□ -1.86
PRPF39-206ENST00000554429 PHKG2P15735 406 aa3.45□□□□□ -1.86
PRPF39-206ENST00000554429 SIK1P57059 783 aa3.45□□□□□ -1.86
PRPF39-206ENST00000554429 PDE4DQ08499 809 aa3.45□□□□□ -1.86
PRPF39-206ENST00000554429 LONRF3Q496Y0 759 aa3.45□□□□□ -1.86
PRPF39-206ENST00000554429 PACS2Q86VP3 889 aa3.45□□□□□ -1.86
PRPF39-206ENST00000554429 CREBRFQ8IUR6 639 aa3.45□□□□□ -1.86
PRPF39-206ENST00000554429 DDX54Q8TDD1 881 aaKnown RBP3.45□□□□□ -1.86
PRPF39-206ENST00000554429 MORC4Q8TE76 937 aa3.45□□□□□ -1.86
PRPF39-206ENST00000554429 DCAF5Q96JK2 942 aa3.45□□□□□ -1.86
PRPF39-206ENST00000554429 KRTAP4-12Q9BQ66 201 aa3.45□□□□□ -1.86
PRPF39-206ENST00000554429 SH3BP1Q9Y3L3 701 aa3.45□□□□□ -1.86
PRPF39-206ENST00000554429 COL11A2P13942 1736 aaPredicted RBP3.44□□□□□ -1.86
PRPF39-206ENST00000554429 ST20-MTHFSA0A0A6YYL1 179 aa3.44□□□□□ -1.86
PRPF39-206ENST00000554429 RPS6KA4O75676 772 aa3.44□□□□□ -1.86
PRPF39-206ENST00000554429 TOMM70O94826 608 aa3.44□□□□□ -1.86
PRPF39-206ENST00000554429 KCNA3P22001 575 aa3.44□□□□□ -1.86
PRPF39-206ENST00000554429 NLGN1Q8N2Q7 840 aa3.44□□□□□ -1.86
PRPF39-206ENST00000554429 AK7Q96M32 723 aa3.44□□□□□ -1.86
PRPF39-206ENST00000554429 SPOCK3Q9BQ16 436 aa3.44□□□□□ -1.86
PRPF39-206ENST00000554429 HDAC5Q9UQL6 1122 aa3.44□□□□□ -1.86
PRPF39-206ENST00000554429 LAMB4A4D0S4 1761 aa3.44□□□□□ -1.86
PRPF39-206ENST00000554429 APPP05067 770 aa3.44□□□□□ -1.86
PRPF39-206ENST00000554429 ITPK1Q13572 414 aa3.44□□□□□ -1.86
PRPF39-206ENST00000554429 KANK3Q6NY19 840 aa3.44□□□□□ -1.86
PRPF39-206ENST00000554429 AMIGO3Q86WK7 504 aa3.44□□□□□ -1.86
PRPF39-206ENST00000554429 IFNL2Q8IZJ0 200 aa3.44□□□□□ -1.86
PRPF39-206ENST00000554429 KRI1Q8N9T8 703 aaKnown RBP3.44□□□□□ -1.86
PRPF39-206ENST00000554429 CARD14Q9BXL6 1004 aa3.44□□□□□ -1.86
PRPF39-206ENST00000554429 ATG3Q9NT62 314 aa3.44□□□□□ -1.86
PRPF39-206ENST00000554429 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP3.43□□□□□ -1.86
PRPF39-206ENST00000554429 H3BM21 787 aa3.43□□□□□ -1.86
PRPF39-206ENST00000554429 PDE6BP35913 854 aa3.43□□□□□ -1.86
PRPF39-206ENST00000554429 MCM6Q14566 821 aa3.43□□□□□ -1.86
PRPF39-206ENST00000554429 AMOTQ4VCS5 1084 aa3.43□□□□□ -1.86
PRPF39-206ENST00000554429 GET4Q7L5D6 327 aaPredicted RBP3.43□□□□□ -1.86
PRPF39-206ENST00000554429 TMC1Q8TDI8 760 aa3.43□□□□□ -1.86
PRPF39-206ENST00000554429 ZNF516Q92618 1163 aa3.43□□□□□ -1.86
PRPF39-206ENST00000554429 ATP13A2Q9NQ11 1180 aa3.43□□□□□ -1.86
PRPF39-206ENST00000554429 CCDC87Q9NVE4 849 aa3.43□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 108 ms