RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 GPR101Q96P66 508 aaPredicted RBP13.05□□□□□ -0.32
CCDC88C-206ENST00000553437 CDC5LQ99459 802 aaKnown RBP13.05□□□□□ -0.32
CCDC88C-206ENST00000553437 BSDC1Q9NW68 430 aaPredicted RBP13.05□□□□□ -0.32
CCDC88C-206ENST00000553437 LRRC37AA6NMS7 1700 aa13.05□□□□□ -0.32
CCDC88C-206ENST00000553437 GRM8O00222 908 aa13.04□□□□□ -0.32
CCDC88C-206ENST00000553437 RIMBP2O15034 1052 aa13.04□□□□□ -0.32
CCDC88C-206ENST00000553437 CT47B1P0C2W7 299 aaPredicted RBP13.04□□□□□ -0.32
CCDC88C-206ENST00000553437 EPHX2P34913 555 aa13.04□□□□□ -0.32
CCDC88C-206ENST00000553437 FAM161AQ3B820 660 aa13.04□□□□□ -0.32
CCDC88C-206ENST00000553437 EPHA10Q5JZY3 1008 aa13.04□□□□□ -0.32
CCDC88C-206ENST00000553437 CHADLQ6NUI6 762 aa13.04□□□□□ -0.32
CCDC88C-206ENST00000553437 SLC4A10Q6U841 1118 aa13.04□□□□□ -0.32
CCDC88C-206ENST00000553437 BCL2L13Q9BXK5 485 aa13.04□□□□□ -0.32
CCDC88C-206ENST00000553437 SRCIN1Q9C0H9 1055 aa13.04□□□□□ -0.32
CCDC88C-206ENST00000553437 MINPP1Q9UNW1 487 aa13.04□□□□□ -0.32
CCDC88C-206ENST00000553437 PTPRCP08575 1304 aa13.04□□□□□ -0.32
CCDC88C-206ENST00000553437 TAF1P21675 1872 aa13.04□□□□□ -0.32
CCDC88C-206ENST00000553437 WTIPA6NIX2 430 aaPredicted RBP13.03□□□□□ -0.32
CCDC88C-206ENST00000553437 RAD17O75943 681 aa13.03□□□□□ -0.32
CCDC88C-206ENST00000553437 UFL1O94874 794 aa13.03□□□□□ -0.32
CCDC88C-206ENST00000553437 ITGA6P23229 1130 aa13.03□□□□□ -0.32
CCDC88C-206ENST00000553437 EPS15P42566 896 aa13.03□□□□□ -0.32
CCDC88C-206ENST00000553437 CIAPIN1Q6FI81 312 aa13.03□□□□□ -0.32
CCDC88C-206ENST00000553437 LDHDQ86WU2 507 aa13.03□□□□□ -0.32
CCDC88C-206ENST00000553437 EYA3Q99504 573 aa13.03□□□□□ -0.32
CCDC88C-206ENST00000553437 ANKIB1Q9P2G1 1089 aa13.03□□□□□ -0.32
CCDC88C-206ENST00000553437 GGA1Q9UJY5 639 aa13.03□□□□□ -0.32
CCDC88C-206ENST00000553437 BRPF1P55201 1214 aaPredicted RBP13.02□□□□□ -0.33
CCDC88C-206ENST00000553437 HTRA3P83110 453 aa13.02□□□□□ -0.33
CCDC88C-206ENST00000553437 DOK7Q18PE1 504 aa13.02□□□□□ -0.33
CCDC88C-206ENST00000553437 KAZALD1Q96I82 304 aa13.02□□□□□ -0.33
CCDC88C-206ENST00000553437 ZC3H12CQ9C0D7 883 aaKnown RBP13.02□□□□□ -0.33
CCDC88C-206ENST00000553437 DBNDD1Q9H9R9 158 aa13.02□□□□□ -0.33
CCDC88C-206ENST00000553437 KCNQ5Q9NR82 932 aa13.02□□□□□ -0.33
CCDC88C-206ENST00000553437 C9orf78Q9NZ63 289 aaPredicted RBP13.02□□□□□ -0.33
CCDC88C-206ENST00000553437 UTYO14607 1347 aa13.02□□□□□ -0.33
CCDC88C-206ENST00000553437 XDHP47989 1333 aa13.02□□□□□ -0.33
CCDC88C-206ENST00000553437 ECE2O60344 883 aa13.01□□□□□ -0.33
CCDC88C-206ENST00000553437 NBPF7P0C2Y1 421 aaPredicted RBP13.01□□□□□ -0.33
CCDC88C-206ENST00000553437 ATP2B4P23634 1241 aa13.01□□□□□ -0.33
CCDC88C-206ENST00000553437 IGHMBP2P38935 993 aaKnown RBP13.01□□□□□ -0.33
CCDC88C-206ENST00000553437 GMPSP49915 693 aaPredicted RBP13.01□□□□□ -0.33
CCDC88C-206ENST00000553437 TNIP1Q15025 636 aa13.01□□□□□ -0.33
CCDC88C-206ENST00000553437 EAPPQ56P03 285 aaPredicted RBP13.01□□□□□ -0.33
CCDC88C-206ENST00000553437 LMBR1LQ6UX01 489 aa13.01□□□□□ -0.33
CCDC88C-206ENST00000553437 PNMA8AQ86V59 439 aaPredicted RBP13.01□□□□□ -0.33
CCDC88C-206ENST00000553437 SUCLG2Q96I99 432 aa13.01□□□□□ -0.33
CCDC88C-206ENST00000553437 SMC4Q9NTJ3 1288 aa13.01□□□□□ -0.33
CCDC88C-206ENST00000553437 GPRC5DQ9NZD1 345 aa13.01□□□□□ -0.33
CCDC88C-206ENST00000553437 LTBP1Q14766 1721 aa13.01□□□□□ -0.33
CCDC88C-206ENST00000553437 ANKRD18BA2A2Z9 1011 aa13□□□□□ -0.33
CCDC88C-206ENST00000553437 PSMD14O00487 310 aa13□□□□□ -0.33
CCDC88C-206ENST00000553437 ITGBL1O95965 494 aaPredicted RBP13□□□□□ -0.33
CCDC88C-206ENST00000553437 LMOD1P29536 600 aaPredicted RBP13□□□□□ -0.33
CCDC88C-206ENST00000553437 RARSP54136 660 aaKnown RBP13□□□□□ -0.33
CCDC88C-206ENST00000553437 CHRDL2Q6WN34 429 aa13□□□□□ -0.33
CCDC88C-206ENST00000553437 TNS4Q8IZW8 715 aa13□□□□□ -0.33
CCDC88C-206ENST00000553437 CACNA1FO60840 1977 aa13□□□□□ -0.33
CCDC88C-206ENST00000553437 PASKQ96RG2 1323 aa12.99□□□□□ -0.33
CCDC88C-206ENST00000553437 CCT4P50991 539 aaKnown RBP12.99□□□□□ -0.33
CCDC88C-206ENST00000553437 IFIT5Q13325 482 aaKnown RBP12.99□□□□□ -0.33
CCDC88C-206ENST00000553437 USP50Q70EL3 339 aaPredicted RBP12.99□□□□□ -0.33
CCDC88C-206ENST00000553437 MPHOSPH8Q99549 860 aa12.99□□□□□ -0.33
CCDC88C-206ENST00000553437 USP44Q9H0E7 712 aa12.99□□□□□ -0.33
CCDC88C-206ENST00000553437 ADARB2Q9NS39 739 aaKnown RBP12.99□□□□□ -0.33
CCDC88C-206ENST00000553437 NOB1Q9ULX3 412 aaKnown RBP12.99□□□□□ -0.33
CCDC88C-206ENST00000553437 CLEC11AQ9Y240 323 aa12.99□□□□□ -0.33
CCDC88C-206ENST00000553437 ZBTB12Q9Y330 459 aaPredicted RBP12.99□□□□□ -0.33
CCDC88C-206ENST00000553437 SCN4AP35499 1836 aa12.98□□□□□ -0.33
CCDC88C-206ENST00000553437 SHTN1A0MZ66 631 aa12.98□□□□□ -0.33
CCDC88C-206ENST00000553437 HNRNPUQ00839 825 aaKnown RBP eCLIP12.98□□□□□ -0.33
CCDC88C-206ENST00000553437 CHRNDQ07001 517 aa12.98□□□□□ -0.33
CCDC88C-206ENST00000553437 MAP1SQ66K74 1059 aaPredicted RBP12.98□□□□□ -0.33
CCDC88C-206ENST00000553437 DPF2Q92785 391 aa12.98□□□□□ -0.33
CCDC88C-206ENST00000553437 ANKRD2Q9GZV1 360 aa12.98□□□□□ -0.33
CCDC88C-206ENST00000553437 LEMD3Q9Y2U8 911 aa12.98□□□□□ -0.33
CCDC88C-206ENST00000553437 MED23Q9ULK4 1368 aa12.97□□□□□ -0.33
CCDC88C-206ENST00000553437 VIL1P09327 827 aaKnown RBP12.97□□□□□ -0.33
CCDC88C-206ENST00000553437 HIRAP54198 1017 aaPredicted RBP12.97□□□□□ -0.33
CCDC88C-206ENST00000553437 RABL6Q3YEC7 729 aaPredicted RBP12.97□□□□□ -0.33
CCDC88C-206ENST00000553437 TXNRD3Q86VQ6 643 aa12.97□□□□□ -0.33
CCDC88C-206ENST00000553437 CNTROBQ8N137 903 aa12.97□□□□□ -0.33
CCDC88C-206ENST00000553437 ANKRD44Q8N8A2 993 aa12.97□□□□□ -0.33
CCDC88C-206ENST00000553437 ZNF594Q96JF6 807 aaPredicted RBP12.97□□□□□ -0.33
CCDC88C-206ENST00000553437 CNOT7Q9UIV1 285 aaKnown RBP12.97□□□□□ -0.33
CCDC88C-206ENST00000553437 CHMP3Q9Y3E7 222 aa12.97□□□□□ -0.33
CCDC88C-206ENST00000553437 ADAMTSL1Q8N6G6 1762 aa12.97□□□□□ -0.33
CCDC88C-206ENST00000553437 ZNF804BA4D1E1 1349 aa12.96□□□□□ -0.33
CCDC88C-206ENST00000553437 IRS2Q9Y4H2 1338 aa12.96□□□□□ -0.33
CCDC88C-206ENST00000553437 KLRK1P26718 216 aa12.96□□□□□ -0.33
CCDC88C-206ENST00000553437 CCDC57Q2TAC2 916 aa12.96□□□□□ -0.33
CCDC88C-206ENST00000553437 PODNQ7Z5L7 613 aa12.96□□□□□ -0.33
CCDC88C-206ENST00000553437 JMYQ8N9B5 988 aa12.96□□□□□ -0.33
CCDC88C-206ENST00000553437 TRPM4Q8TD43 1214 aa12.96□□□□□ -0.33
CCDC88C-206ENST00000553437 BICC1Q9H694 974 aaKnown RBP12.96□□□□□ -0.33
CCDC88C-206ENST00000553437 PGAP2Q9UHJ9 254 aa12.96□□□□□ -0.33
CCDC88C-206ENST00000553437 G3V3G9 751 aa12.95□□□□□ -0.34
CCDC88C-206ENST00000553437 SNAP23O00161 211 aa12.95□□□□□ -0.34
CCDC88C-206ENST00000553437 TAF5LO75529 589 aa12.95□□□□□ -0.34
CCDC88C-206ENST00000553437 RPS12P25398 132 aaKnown RBP12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 742.9 ms