RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 BICC1Q9H694 974 aaKnown RBP6.43□□□□□ -1.38
LIMA1-212ENST00000552491 PXDNQ92626 1479 aa6.43□□□□□ -1.38
LIMA1-212ENST00000552491 MED23Q9ULK4 1368 aa6.43□□□□□ -1.38
LIMA1-212ENST00000552491 CCDC144BQ3MJ40 725 aa6.43□□□□□ -1.38
LIMA1-212ENST00000552491 C14orf37Q86TY3 774 aa6.43□□□□□ -1.38
LIMA1-212ENST00000552491 PLA2G4DQ86XP0 818 aa6.43□□□□□ -1.38
LIMA1-212ENST00000552491 CCDC144CPQ8IYA2 1237 aa6.43□□□□□ -1.38
LIMA1-212ENST00000552491 CHMP4AQ9BY43 222 aa6.43□□□□□ -1.38
LIMA1-212ENST00000552491 SIL1Q9H173 461 aa6.43□□□□□ -1.38
LIMA1-212ENST00000552491 DNAJC25Q9H1X3 360 aa6.43□□□□□ -1.38
LIMA1-212ENST00000552491 TNMDQ9H2S6 317 aa6.43□□□□□ -1.38
LIMA1-212ENST00000552491 NDUFB9Q9Y6M9 179 aa6.43□□□□□ -1.38
LIMA1-212ENST00000552491 USP54Q70EL1 1684 aa6.42□□□□□ -1.38
LIMA1-212ENST00000552491 A0A087WWV3 80 aa6.42□□□□□ -1.38
LIMA1-212ENST00000552491 GOLGA6L6A8MZA4 724 aa6.42□□□□□ -1.38
LIMA1-212ENST00000552491 GIGYF1O75420 1035 aaPredicted RBP6.42□□□□□ -1.38
LIMA1-212ENST00000552491 KCNA6P17658 529 aa6.42□□□□□ -1.38
LIMA1-212ENST00000552491 ZNF75DP51815 510 aa6.42□□□□□ -1.38
LIMA1-212ENST00000552491 NCBP1Q09161 790 aaKnown RBP6.42□□□□□ -1.38
LIMA1-212ENST00000552491 ZSCAN25Q6NSZ9 544 aa6.42□□□□□ -1.38
LIMA1-212ENST00000552491 BLOC1S2Q6QNY1 142 aa6.42□□□□□ -1.38
LIMA1-212ENST00000552491 KSR2Q6VAB6 950 aa6.42□□□□□ -1.38
LIMA1-212ENST00000552491 PDCL2Q8N4E4 241 aa6.42□□□□□ -1.38
LIMA1-212ENST00000552491 CACTINQ8WUQ7 758 aaKnown RBP6.42□□□□□ -1.38
LIMA1-212ENST00000552491 IP6K1Q92551 441 aa6.42□□□□□ -1.38
LIMA1-212ENST00000552491 SPATA32Q96LK8 384 aa6.42□□□□□ -1.38
LIMA1-212ENST00000552491 C16orf45Q96MC5 204 aaPredicted RBP6.42□□□□□ -1.38
LIMA1-212ENST00000552491 CLSTN2Q9H4D0 955 aa6.42□□□□□ -1.38
LIMA1-212ENST00000552491 DBF4Q9UBU7 674 aaPredicted RBP6.42□□□□□ -1.38
LIMA1-212ENST00000552491 TBX22Q9Y458 520 aa6.42□□□□□ -1.38
LIMA1-212ENST00000552491 G3V3G9 751 aa6.42□□□□□ -1.38
LIMA1-212ENST00000552491 GRM8O00222 908 aa6.42□□□□□ -1.38
LIMA1-212ENST00000552491 ALDH1L1O75891 902 aa6.42□□□□□ -1.38
LIMA1-212ENST00000552491 TEFQ10587 303 aa6.42□□□□□ -1.38
LIMA1-212ENST00000552491 ARID5BQ14865 1188 aa6.42□□□□□ -1.38
LIMA1-212ENST00000552491 DOK7Q18PE1 504 aa6.42□□□□□ -1.38
LIMA1-212ENST00000552491 EPHA10Q5JZY3 1008 aa6.42□□□□□ -1.38
LIMA1-212ENST00000552491 ZNF530Q6P9A1 599 aaPredicted RBP6.42□□□□□ -1.38
LIMA1-212ENST00000552491 TDRD7Q8NHU6 1098 aaKnown RBP6.42□□□□□ -1.38
LIMA1-212ENST00000552491 FSD1Q9BTV5 496 aa6.42□□□□□ -1.38
LIMA1-212ENST00000552491 LMO7Q8WWI1 1683 aa6.41□□□□□ -1.38
LIMA1-212ENST00000552491 JCADQ9P266 1359 aa6.41□□□□□ -1.38
LIMA1-212ENST00000552491 NPHP3Q7Z494 1330 aa6.41□□□□□ -1.38
LIMA1-212ENST00000552491 TAF5LO75529 589 aa6.41□□□□□ -1.38
LIMA1-212ENST00000552491 IGKV5-2P06315 115 aa6.41□□□□□ -1.38
LIMA1-212ENST00000552491 PSMA5P28066 241 aa6.41□□□□□ -1.38
LIMA1-212ENST00000552491 AIMP1Q12904 312 aaKnown RBP6.41□□□□□ -1.38
LIMA1-212ENST00000552491 RESTQ13127 1097 aa6.41□□□□□ -1.38
LIMA1-212ENST00000552491 ERC1Q8IUD2 1116 aa6.41□□□□□ -1.38
LIMA1-212ENST00000552491 RBM33Q96EV2 1170 aaKnown RBP6.41□□□□□ -1.38
LIMA1-212ENST00000552491 GPATCH3Q96I76 525 aa6.41□□□□□ -1.38
LIMA1-212ENST00000552491 SEC62Q99442 399 aaKnown RBP6.41□□□□□ -1.38
LIMA1-212ENST00000552491 TRIM5Q9C035 493 aa6.41□□□□□ -1.38
LIMA1-212ENST00000552491 FTOQ9C0B1 505 aaKnown RBP eCLIP6.41□□□□□ -1.38
LIMA1-212ENST00000552491 BCL11BQ9C0K0 894 aaPredicted RBP6.41□□□□□ -1.38
LIMA1-212ENST00000552491 EID1Q9Y6B2 187 aa6.41□□□□□ -1.38
LIMA1-212ENST00000552491 HEG1Q9ULI3 1381 aa6.41□□□□□ -1.38
LIMA1-212ENST00000552491 NFAT5O94916 1531 aa6.41□□□□□ -1.38
LIMA1-212ENST00000552491 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP6.41□□□□□ -1.38
LIMA1-212ENST00000552491 RNMTO43148 476 aaKnown RBP6.41□□□□□ -1.38
LIMA1-212ENST00000552491 IGSF3O75054 1194 aa6.41□□□□□ -1.38
LIMA1-212ENST00000552491 PDCP20941 246 aa6.41□□□□□ -1.38
LIMA1-212ENST00000552491 ZNF165P49910 485 aa6.41□□□□□ -1.38
LIMA1-212ENST00000552491 CHAF1AQ13111 956 aaPredicted RBP6.41□□□□□ -1.38
LIMA1-212ENST00000552491 PDIA6Q15084 440 aa6.41□□□□□ -1.38
LIMA1-212ENST00000552491 AKAP4Q5JQC9 854 aa6.41□□□□□ -1.38
LIMA1-212ENST00000552491 UTP14CQ5TAP6 766 aaKnown RBP6.41□□□□□ -1.38
LIMA1-212ENST00000552491 CCDC129Q6ZRS4 1044 aa6.41□□□□□ -1.38
LIMA1-212ENST00000552491 C11orf57Q6ZUT1 292 aaPredicted RBP6.41□□□□□ -1.38
LIMA1-212ENST00000552491 BRF1Q92994 677 aa6.41□□□□□ -1.38
LIMA1-212ENST00000552491 LRRC2Q9BYS8 371 aa6.41□□□□□ -1.38
LIMA1-212ENST00000552491 SCAND2PQ9GZW5 306 aaPredicted RBP6.41□□□□□ -1.38
LIMA1-212ENST00000552491 DDX19AQ9NUU7 478 aaKnown RBP6.41□□□□□ -1.38
LIMA1-212ENST00000552491 ADGRL3Q9HAR2 1447 aa6.41□□□□□ -1.38
LIMA1-212ENST00000552491 UTYO14607 1347 aa6.4□□□□□ -1.38
LIMA1-212ENST00000552491 ARHGAP23Q9P227 1491 aa6.4□□□□□ -1.38
LIMA1-212ENST00000552491 USP27XA6NNY8 438 aa6.4□□□□□ -1.38
LIMA1-212ENST00000552491 ADD1P35611 737 aaKnown RBP6.4□□□□□ -1.38
LIMA1-212ENST00000552491 CEBPZQ03701 1054 aaKnown RBP6.4□□□□□ -1.38
LIMA1-212ENST00000552491 G3BP1Q13283 466 aaKnown RBP eCLIP6.4□□□□□ -1.38
LIMA1-212ENST00000552491 IQCB1Q15051 598 aa6.4□□□□□ -1.38
LIMA1-212ENST00000552491 DRC7Q8IY82 874 aa6.4□□□□□ -1.38
LIMA1-212ENST00000552491 LINS1Q8NG48 757 aa6.4□□□□□ -1.38
LIMA1-212ENST00000552491 GTF3C6Q969F1 213 aa6.4□□□□□ -1.38
LIMA1-212ENST00000552491 ALDH8A1Q9H2A2 487 aaPredicted RBP6.4□□□□□ -1.38
LIMA1-212ENST00000552491 USP16Q9Y5T5 823 aa6.4□□□□□ -1.38
LIMA1-212ENST00000552491 ANKARQ7Z5J8 1434 aa6.4□□□□□ -1.39
LIMA1-212ENST00000552491 GOLGA6L4A6NEF3 574 aa6.4□□□□□ -1.39
LIMA1-212ENST00000552491 HIP1O00291 1037 aa6.4□□□□□ -1.39
LIMA1-212ENST00000552491 PPFIA3O75145 1194 aa6.4□□□□□ -1.39
LIMA1-212ENST00000552491 TNNT1P13805 278 aa6.4□□□□□ -1.39
LIMA1-212ENST00000552491 TSGA10IPQ3SY00 556 aa6.4□□□□□ -1.39
LIMA1-212ENST00000552491 SLFNL1Q499Z3 407 aa6.4□□□□□ -1.39
LIMA1-212ENST00000552491 USPL1Q5W0Q7 1092 aa6.4□□□□□ -1.39
LIMA1-212ENST00000552491 BICD2Q8TD16 824 aa6.4□□□□□ -1.39
LIMA1-212ENST00000552491 GOLPH3LQ9H4A5 285 aa6.4□□□□□ -1.39
LIMA1-212ENST00000552491 SLIT1O75093 1534 aa6.4□□□□□ -1.39
LIMA1-212ENST00000552491 A0A0G2JLW4 131 aa6.39□□□□□ -1.39
LIMA1-212ENST00000552491 FOSBP53539 338 aa6.39□□□□□ -1.39
LIMA1-212ENST00000552491 SCRN1Q12765 414 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms