RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 MAP2K2P36507 400 aa9.24□□□□□ -0.93
DEPDC4-208ENST00000549341 BRPF1P55201 1214 aaPredicted RBP9.24□□□□□ -0.93
DEPDC4-208ENST00000549341 CST9Q5W186 159 aa9.24□□□□□ -0.93
DEPDC4-208ENST00000549341 Q6ZNB5 142 aa9.24□□□□□ -0.93
DEPDC4-208ENST00000549341 DZIP3Q86Y13 1208 aaKnown RBP9.24□□□□□ -0.93
DEPDC4-208ENST00000549341 SYNE4Q8N205 404 aa9.24□□□□□ -0.93
DEPDC4-208ENST00000549341 ZNF496Q96IT1 587 aaPredicted RBP9.24□□□□□ -0.93
DEPDC4-208ENST00000549341 A1BGP04217 495 aa9.23□□□□□ -0.93
DEPDC4-208ENST00000549341 IL6STP40189 918 aaPredicted RBP9.23□□□□□ -0.93
DEPDC4-208ENST00000549341 SCNN1DP51172 638 aa9.23□□□□□ -0.93
DEPDC4-208ENST00000549341 LARGE2Q8N3Y3 721 aa9.23□□□□□ -0.93
DEPDC4-208ENST00000549341 ADAM33Q9BZ11 813 aa9.23□□□□□ -0.93
DEPDC4-208ENST00000549341 RABGEF1Q9UJ41 708 aa9.23□□□□□ -0.93
DEPDC4-208ENST00000549341 ADAMTS8Q9UP79 889 aa9.23□□□□□ -0.93
DEPDC4-208ENST00000549341 SCN4AP35499 1836 aa9.23□□□□□ -0.93
DEPDC4-208ENST00000549341 SLX4Q8IY92 1834 aa9.23□□□□□ -0.93
DEPDC4-208ENST00000549341 HEG1Q9ULI3 1381 aa9.23□□□□□ -0.93
DEPDC4-208ENST00000549341 CCDC88AQ3V6T2 1871 aa9.22□□□□□ -0.93
DEPDC4-208ENST00000549341 EVI5O60447 810 aa9.22□□□□□ -0.93
DEPDC4-208ENST00000549341 PDE4AP27815 886 aa9.22□□□□□ -0.93
DEPDC4-208ENST00000549341 IL13P35225 146 aa9.22□□□□□ -0.93
DEPDC4-208ENST00000549341 MTHFSDQ2M296 383 aaKnown RBP9.22□□□□□ -0.93
DEPDC4-208ENST00000549341 SAPCD2Q86UD0 394 aa9.22□□□□□ -0.93
DEPDC4-208ENST00000549341 SLC51AQ86UW1 340 aa9.22□□□□□ -0.93
DEPDC4-208ENST00000549341 GLIS2Q9BZE0 524 aaPredicted RBP9.22□□□□□ -0.93
DEPDC4-208ENST00000549341 GTF3C3Q9Y5Q9 886 aa9.22□□□□□ -0.93
DEPDC4-208ENST00000549341 COL4A5P29400 1685 aa9.21□□□□□ -0.93
DEPDC4-208ENST00000549341 PPP1R3GB7ZBB8 358 aa9.21□□□□□ -0.94
DEPDC4-208ENST00000549341 DIAPH1O60610 1272 aaKnown RBP9.21□□□□□ -0.94
DEPDC4-208ENST00000549341 GTF2E1P29083 439 aaPredicted RBP9.21□□□□□ -0.94
DEPDC4-208ENST00000549341 TEFQ10587 303 aa9.21□□□□□ -0.94
DEPDC4-208ENST00000549341 USP50Q70EL3 339 aaPredicted RBP9.21□□□□□ -0.94
DEPDC4-208ENST00000549341 NIP7Q9Y221 180 aaKnown RBP eCLIP9.21□□□□□ -0.94
DEPDC4-208ENST00000549341 ZNF652Q9Y2D9 606 aa9.21□□□□□ -0.94
DEPDC4-208ENST00000549341 DICER1Q9UPY3 1922 aaKnown RBP9.21□□□□□ -0.94
DEPDC4-208ENST00000549341 TCERG1O14776 1098 aaKnown RBP9.2□□□□□ -0.94
DEPDC4-208ENST00000549341 LAPTM4AQ15012 233 aa9.2□□□□□ -0.94
DEPDC4-208ENST00000549341 ZNF790Q6PG37 636 aa9.2□□□□□ -0.94
DEPDC4-208ENST00000549341 LAPTM4BQ86VI4 370 aa9.2□□□□□ -0.94
DEPDC4-208ENST00000549341 NIM1KQ8IY84 436 aa9.2□□□□□ -0.94
DEPDC4-208ENST00000549341 RUNDC1Q96C34 613 aa9.2□□□□□ -0.94
DEPDC4-208ENST00000549341 FMNL2Q96PY5 1086 aa9.2□□□□□ -0.94
DEPDC4-208ENST00000549341 ZIC5Q96T25 663 aa9.2□□□□□ -0.94
DEPDC4-208ENST00000549341 PSMD1Q99460 953 aa9.2□□□□□ -0.94
DEPDC4-208ENST00000549341 ABCC12Q96J65 1359 aa9.2□□□□□ -0.94
DEPDC4-208ENST00000549341 PPIP5K2O43314 1243 aa9.19□□□□□ -0.94
DEPDC4-208ENST00000549341 U2AF1L5P0DN76 240 aaPredicted RBP9.19□□□□□ -0.94
DEPDC4-208ENST00000549341 U2AF1Q01081 240 aaKnown RBP eCLIP9.19□□□□□ -0.94
DEPDC4-208ENST00000549341 NOGQ13253 232 aa9.19□□□□□ -0.94
DEPDC4-208ENST00000549341 TEX13AQ9BXU3 409 aaPredicted RBP9.19□□□□□ -0.94
DEPDC4-208ENST00000549341 ADARB2Q9NS39 739 aaKnown RBP9.19□□□□□ -0.94
DEPDC4-208ENST00000549341 SCN11AQ9UI33 1791 aa9.19□□□□□ -0.94
DEPDC4-208ENST00000549341 U2SURPO15042 1029 aaKnown RBP9.18□□□□□ -0.94
DEPDC4-208ENST00000549341 ALDH1B1P30837 517 aa9.18□□□□□ -0.94
DEPDC4-208ENST00000549341 GMPSP49915 693 aaPredicted RBP9.18□□□□□ -0.94
DEPDC4-208ENST00000549341 HUNKP57058 714 aa9.18□□□□□ -0.94
DEPDC4-208ENST00000549341 CACNA1SQ13698 1873 aa9.18□□□□□ -0.94
DEPDC4-208ENST00000549341 AOC3Q16853 763 aa9.18□□□□□ -0.94
DEPDC4-208ENST00000549341 TPTE2Q6XPS3 522 aa9.18□□□□□ -0.94
DEPDC4-208ENST00000549341 RPGRQ92834 1020 aaKnown RBP9.18□□□□□ -0.94
DEPDC4-208ENST00000549341 GPRC5DQ9NZD1 345 aa9.18□□□□□ -0.94
DEPDC4-208ENST00000549341 MAPK8IP3Q9UPT6 1336 aa9.18□□□□□ -0.94
DEPDC4-208ENST00000549341 SNED1Q8TER0 1413 aa9.17□□□□□ -0.94
DEPDC4-208ENST00000549341 PRAMEF22A3QJZ6 481 aa9.17□□□□□ -0.94
DEPDC4-208ENST00000549341 KLRG2A4D1S0 409 aaPredicted RBP9.17□□□□□ -0.94
DEPDC4-208ENST00000549341 SOWAHBA6NEL2 793 aa9.17□□□□□ -0.94
DEPDC4-208ENST00000549341 PPEF1O14829 653 aaPredicted RBP9.17□□□□□ -0.94
DEPDC4-208ENST00000549341 KCNQ3O43525 872 aa9.17□□□□□ -0.94
DEPDC4-208ENST00000549341 KCNC4Q03721 635 aa9.17□□□□□ -0.94
DEPDC4-208ENST00000549341 NUTM1Q86Y26 1132 aa9.17□□□□□ -0.94
DEPDC4-208ENST00000549341 TRPM4Q8TD43 1214 aa9.17□□□□□ -0.94
DEPDC4-208ENST00000549341 HHIPL1Q96JK4 782 aa9.17□□□□□ -0.94
DEPDC4-208ENST00000549341 SALL2Q9Y467 1007 aaPredicted RBP9.17□□□□□ -0.94
DEPDC4-208ENST00000549341 BCORQ6W2J9 1755 aa9.17□□□□□ -0.94
DEPDC4-208ENST00000549341 ARFGEF2Q9Y6D5 1785 aa9.17□□□□□ -0.94
DEPDC4-208ENST00000549341 TRPA1O75762 1119 aa9.16□□□□□ -0.94
DEPDC4-208ENST00000549341 MAP3K9P80192 1104 aa9.16□□□□□ -0.94
DEPDC4-208ENST00000549341 CLEC4GQ6UXB4 293 aa9.16□□□□□ -0.94
DEPDC4-208ENST00000549341 DLK2Q6UY11 383 aa9.16□□□□□ -0.94
DEPDC4-208ENST00000549341 NBPF15Q8N660 670 aa9.16□□□□□ -0.94
DEPDC4-208ENST00000549341 BCL2L13Q9BXK5 485 aa9.16□□□□□ -0.94
DEPDC4-208ENST00000549341 UBR2Q8IWV8 1755 aa9.16□□□□□ -0.94
DEPDC4-208ENST00000549341 BTBD11A6QL63 1104 aa9.15□□□□□ -0.94
DEPDC4-208ENST00000549341 GNAT3A8MTJ3 354 aa9.15□□□□□ -0.94
DEPDC4-208ENST00000549341 APAF1O14727 1248 aa9.15□□□□□ -0.94
DEPDC4-208ENST00000549341 ERICH6BQ5W0A0 696 aa9.15□□□□□ -0.94
DEPDC4-208ENST00000549341 CTU1Q7Z7A3 348 aaKnown RBP9.15□□□□□ -0.94
DEPDC4-208ENST00000549341 CCDC146Q8IYE0 955 aa9.15□□□□□ -0.94
DEPDC4-208ENST00000549341 FBXW7Q969H0 707 aa9.15□□□□□ -0.94
DEPDC4-208ENST00000549341 SAGE1Q9NXZ1 904 aa9.15□□□□□ -0.94
DEPDC4-208ENST00000549341 HPS5Q9UPZ3 1129 aa9.15□□□□□ -0.94
DEPDC4-208ENST00000549341 USP16Q9Y5T5 823 aa9.15□□□□□ -0.94
DEPDC4-208ENST00000549341 SHTN1A0MZ66 631 aa9.14□□□□□ -0.95
DEPDC4-208ENST00000549341 E9PSI1 815 aa9.14□□□□□ -0.95
DEPDC4-208ENST00000549341 RAD17O75943 681 aa9.14□□□□□ -0.95
DEPDC4-208ENST00000549341 KIF23Q02241 960 aaPredicted RBP9.14□□□□□ -0.95
DEPDC4-208ENST00000549341 HLFQ16534 295 aa9.14□□□□□ -0.95
DEPDC4-208ENST00000549341 CRY2Q49AN0 593 aa9.14□□□□□ -0.95
DEPDC4-208ENST00000549341 CC2D2BQ6DHV5 1058 aa9.14□□□□□ -0.95
DEPDC4-208ENST00000549341 CDC37L1Q7L3B6 337 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms