RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 DLG5Q8TDM6 1919 aa6.7□□□□□ -1.34
LIMA1-203ENST00000547825 IPO8O15397 1037 aaKnown RBP6.7□□□□□ -1.34
LIMA1-203ENST00000547825 PIP4K2BP78356 416 aa6.69□□□□□ -1.34
LIMA1-203ENST00000547825 MRRFQ96E11 262 aaKnown RBP6.69□□□□□ -1.34
LIMA1-203ENST00000547825 ANO2Q9NQ90 1003 aa6.69□□□□□ -1.34
LIMA1-203ENST00000547825 CEP126Q9P2H0 1117 aa6.69□□□□□ -1.34
LIMA1-203ENST00000547825 ACEP12821 1306 aa6.69□□□□□ -1.34
LIMA1-203ENST00000547825 FAM196BA6NMK8 535 aa6.69□□□□□ -1.34
LIMA1-203ENST00000547825 ZRSR1Q15695 479 aaKnown RBP6.69□□□□□ -1.34
LIMA1-203ENST00000547825 DESI1Q6ICB0 168 aa6.69□□□□□ -1.34
LIMA1-203ENST00000547825 PNMA1Q8ND90 353 aa6.69□□□□□ -1.34
LIMA1-203ENST00000547825 KIAA1551Q9HCM1 1747 aa6.69□□□□□ -1.34
LIMA1-203ENST00000547825 ZKSCAN2Q63HK3 967 aa6.69□□□□□ -1.34
LIMA1-203ENST00000547825 SLC4A10Q6U841 1118 aa6.69□□□□□ -1.34
LIMA1-203ENST00000547825 USB1Q9BQ65 265 aaKnown RBP6.69□□□□□ -1.34
LIMA1-203ENST00000547825 AATKQ6ZMQ8 1374 aa6.69□□□□□ -1.34
LIMA1-203ENST00000547825 ARHGAP33O14559 1287 aa6.69□□□□□ -1.34
LIMA1-203ENST00000547825 CTHP32929 405 aa6.69□□□□□ -1.34
LIMA1-203ENST00000547825 DPYDQ12882 1025 aa6.69□□□□□ -1.34
LIMA1-203ENST00000547825 C5P01031 1676 aa6.68□□□□□ -1.34
LIMA1-203ENST00000547825 RBM47A0AV96 593 aaKnown RBP6.68□□□□□ -1.34
LIMA1-203ENST00000547825 PRDM9Q9NQV7 894 aa6.68□□□□□ -1.34
LIMA1-203ENST00000547825 IGSF5Q9NSI5 407 aa6.68□□□□□ -1.34
LIMA1-203ENST00000547825 NPC1L1Q9UHC9 1359 aa6.68□□□□□ -1.34
LIMA1-203ENST00000547825 RRP9O43818 475 aaKnown RBP6.68□□□□□ -1.34
LIMA1-203ENST00000547825 FGD1P98174 961 aa6.68□□□□□ -1.34
LIMA1-203ENST00000547825 OS9Q13438 667 aaPredicted RBP6.68□□□□□ -1.34
LIMA1-203ENST00000547825 DZIP1LQ8IYY4 767 aaKnown RBP6.68□□□□□ -1.34
LIMA1-203ENST00000547825 TJP1Q07157 1748 aa6.68□□□□□ -1.34
LIMA1-203ENST00000547825 KIF13BQ9NQT8 1826 aa6.68□□□□□ -1.34
LIMA1-203ENST00000547825 XRCC6P12956 609 aaKnown RBP eCLIP6.68□□□□□ -1.34
LIMA1-203ENST00000547825 CAPN12Q6ZSI9 719 aa6.68□□□□□ -1.34
LIMA1-203ENST00000547825 SCUBE3Q8IX30 993 aa6.68□□□□□ -1.34
LIMA1-203ENST00000547825 OGFOD1Q8N543 542 aa6.68□□□□□ -1.34
LIMA1-203ENST00000547825 ZNF592Q92610 1267 aa6.68□□□□□ -1.34
LIMA1-203ENST00000547825 TTC21AQ8NDW8 1320 aa6.67□□□□□ -1.34
LIMA1-203ENST00000547825 SOWAHDA6NJG2 315 aa6.67□□□□□ -1.34
LIMA1-203ENST00000547825 PRMT3O60678 531 aa6.67□□□□□ -1.34
LIMA1-203ENST00000547825 PRPF40AO75400 957 aaKnown RBP6.67□□□□□ -1.34
LIMA1-203ENST00000547825 ZNF16P17020 682 aaPredicted RBP6.67□□□□□ -1.34
LIMA1-203ENST00000547825 SKOR2Q2VWA4 1001 aaPredicted RBP6.67□□□□□ -1.34
LIMA1-203ENST00000547825 ZNF771Q7L3S4 317 aaPredicted RBP6.67□□□□□ -1.34
LIMA1-203ENST00000547825 PLPP7Q8NBV4 271 aa6.67□□□□□ -1.34
LIMA1-203ENST00000547825 ATP2B4P23634 1241 aa6.67□□□□□ -1.34
LIMA1-203ENST00000547825 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.67□□□□□ -1.34
LIMA1-203ENST00000547825 KRT28Q7Z3Y7 464 aa6.67□□□□□ -1.34
LIMA1-203ENST00000547825 PHTF2Q8N3S3 785 aa6.67□□□□□ -1.34
LIMA1-203ENST00000547825 KIF24Q5T7B8 1368 aa6.67□□□□□ -1.34
LIMA1-203ENST00000547825 ACTN4O43707 911 aaKnown RBP6.67□□□□□ -1.34
LIMA1-203ENST00000547825 APLP1P51693 650 aa6.67□□□□□ -1.34
LIMA1-203ENST00000547825 BRICD5Q6PL45 260 aa6.67□□□□□ -1.34
LIMA1-203ENST00000547825 FAM200AQ8TCP9 573 aa6.67□□□□□ -1.34
LIMA1-203ENST00000547825 ZHX1Q9UKY1 873 aaPredicted RBP6.67□□□□□ -1.34
LIMA1-203ENST00000547825 PCDHB9Q9Y5E1 797 aa6.67□□□□□ -1.34
LIMA1-203ENST00000547825 ZNF211Q13398 564 aaPredicted RBP6.66□□□□□ -1.34
LIMA1-203ENST00000547825 MTMR3Q13615 1198 aa6.66□□□□□ -1.34
LIMA1-203ENST00000547825 RNF135Q8IUD6 432 aa6.66□□□□□ -1.34
LIMA1-203ENST00000547825 PLEKHM2Q8IWE5 1019 aa6.66□□□□□ -1.34
LIMA1-203ENST00000547825 TSR2Q969E8 191 aaKnown RBP6.66□□□□□ -1.34
LIMA1-203ENST00000547825 THAP11Q96EK4 314 aa6.66□□□□□ -1.34
LIMA1-203ENST00000547825 SCUBE2Q9NQ36 999 aa6.66□□□□□ -1.34
LIMA1-203ENST00000547825 UBR3Q6ZT12 1888 aa6.66□□□□□ -1.34
LIMA1-203ENST00000547825 TNNT3P45378 269 aaPredicted RBP6.66□□□□□ -1.34
LIMA1-203ENST00000547825 ANKMY2Q8IV38 441 aa6.66□□□□□ -1.34
LIMA1-203ENST00000547825 PRIMPOLQ96LW4 560 aa6.66□□□□□ -1.34
LIMA1-203ENST00000547825 BIN2Q9UBW5 565 aaPredicted RBP6.66□□□□□ -1.34
LIMA1-203ENST00000547825 ERBB4Q15303 1308 aa6.66□□□□□ -1.34
LIMA1-203ENST00000547825 EVC2Q86UK5 1308 aa6.66□□□□□ -1.34
LIMA1-203ENST00000547825 RTL1A6NKG5 1358 aa6.66□□□□□ -1.34
LIMA1-203ENST00000547825 BHMG1C9JSJ3 638 aaPredicted RBP6.66□□□□□ -1.34
LIMA1-203ENST00000547825 ARID4AP29374 1257 aaPredicted RBP6.66□□□□□ -1.34
LIMA1-203ENST00000547825 XPCQ01831 940 aaPredicted RBP6.66□□□□□ -1.34
LIMA1-203ENST00000547825 SLFNL1Q499Z3 407 aa6.66□□□□□ -1.34
LIMA1-203ENST00000547825 NFATC2IPQ8NCF5 419 aa6.66□□□□□ -1.34
LIMA1-203ENST00000547825 GIPC2Q8TF65 315 aa6.66□□□□□ -1.34
LIMA1-203ENST00000547825 RILPL2Q969X0 211 aa6.66□□□□□ -1.34
LIMA1-203ENST00000547825 KDM3BQ7LBC6 1761 aa6.65□□□□□ -1.34
LIMA1-203ENST00000547825 ST18O60284 1047 aa6.65□□□□□ -1.34
LIMA1-203ENST00000547825 ESCO1Q5FWF5 840 aa6.65□□□□□ -1.34
LIMA1-203ENST00000547825 TCP11L2Q8N4U5 519 aa6.65□□□□□ -1.34
LIMA1-203ENST00000547825 SP7Q8TDD2 431 aaPredicted RBP6.65□□□□□ -1.34
LIMA1-203ENST00000547825 MRC1P22897 1456 aa6.65□□□□□ -1.34
LIMA1-203ENST00000547825 FAM83GA6ND36 823 aa6.65□□□□□ -1.34
LIMA1-203ENST00000547825 MCCP23508 829 aa6.65□□□□□ -1.34
LIMA1-203ENST00000547825 KMT5BQ4FZB7 885 aa6.65□□□□□ -1.34
LIMA1-203ENST00000547825 MARVELD3Q96A59 401 aa6.65□□□□□ -1.34
LIMA1-203ENST00000547825 TTC21BQ7Z4L5 1316 aa6.65□□□□□ -1.35
LIMA1-203ENST00000547825 PTMSP20962 102 aa6.65□□□□□ -1.35
LIMA1-203ENST00000547825 VPS72Q15906 364 aa6.65□□□□□ -1.35
LIMA1-203ENST00000547825 SYAP1Q96A49 352 aaPredicted RBP6.65□□□□□ -1.35
LIMA1-203ENST00000547825 C4AP0C0L4 1744 aa6.65□□□□□ -1.35
LIMA1-203ENST00000547825 C4BP0C0L5 1744 aa6.65□□□□□ -1.35
LIMA1-203ENST00000547825 SPATA31A5Q5VU36 1347 aa6.65□□□□□ -1.35
LIMA1-203ENST00000547825 SPATA31A7Q8IWB4 1347 aa6.65□□□□□ -1.35
LIMA1-203ENST00000547825 FOXO3O43524 673 aa6.64□□□□□ -1.35
LIMA1-203ENST00000547825 LARP1Q6PKG0 1096 aaKnown RBP6.64□□□□□ -1.35
LIMA1-203ENST00000547825 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.64□□□□□ -1.35
LIMA1-203ENST00000547825 ADAM32Q8TC27 787 aa6.64□□□□□ -1.35
LIMA1-203ENST00000547825 CLP1Q92989 425 aaKnown RBP6.64□□□□□ -1.35
LIMA1-203ENST00000547825 AFF2P51816 1311 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms