RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 ATG3Q9NT62 314 aa14.86□□□□□ -0.03
RNF4-222ENST00000541204 ATP5JP18859 108 aa14.86□□□□□ -0.03
RNF4-222ENST00000541204 ATG9AQ7Z3C6 839 aa14.86□□□□□ -0.03
RNF4-222ENST00000541204 MAP4K1Q92918 833 aa14.86□□□□□ -0.03
RNF4-222ENST00000541204 PLEKHG2Q9H7P9 1386 aa14.86□□□□□ -0.03
RNF4-222ENST00000541204 SLC27A2O14975 620 aa14.85□□□□□ -0.03
RNF4-222ENST00000541204 AP5Z1O43299 807 aa14.85□□□□□ -0.03
RNF4-222ENST00000541204 CCDC191Q8NCU4 936 aa14.85□□□□□ -0.03
RNF4-222ENST00000541204 ARID3AQ99856 593 aa14.85□□□□□ -0.03
RNF4-222ENST00000541204 ADAMTS2O95450 1211 aa14.85□□□□□ -0.03
RNF4-222ENST00000541204 MAP7D2Q96T17 732 aa14.85□□□□□ -0.03
RNF4-222ENST00000541204 GOLIM4O00461 696 aa14.85□□□□□ -0.03
RNF4-222ENST00000541204 LARP1BQ659C4 914 aaKnown RBP14.85□□□□□ -0.03
RNF4-222ENST00000541204 FAM173BQ6P4H8 233 aa14.85□□□□□ -0.03
RNF4-222ENST00000541204 FERMT3Q86UX7 667 aa14.85□□□□□ -0.03
RNF4-222ENST00000541204 KIF6Q6ZMV9 814 aa14.84□□□□□ -0.03
RNF4-222ENST00000541204 CDC37L1Q7L3B6 337 aa14.84□□□□□ -0.03
RNF4-222ENST00000541204 TCIRG1Q13488 830 aa14.83□□□□□ -0.04
RNF4-222ENST00000541204 HLFQ16534 295 aa14.83□□□□□ -0.04
RNF4-222ENST00000541204 TTC6Q86TZ1 520 aa14.83□□□□□ -0.04
RNF4-222ENST00000541204 MYRIPQ8NFW9 859 aa14.83□□□□□ -0.04
RNF4-222ENST00000541204 TAF5LO75529 589 aa14.82□□□□□ -0.04
RNF4-222ENST00000541204 STARD3NLO95772 234 aa14.82□□□□□ -0.04
RNF4-222ENST00000541204 CCDC57Q2TAC2 916 aa14.82□□□□□ -0.04
RNF4-222ENST00000541204 COL15A1P39059 1388 aa14.82□□□□□ -0.04
RNF4-222ENST00000541204 EYA2O00167 538 aa14.82□□□□□ -0.04
RNF4-222ENST00000541204 STK3Q13188 491 aa14.82□□□□□ -0.04
RNF4-222ENST00000541204 TSC1Q92574 1164 aa14.82□□□□□ -0.04
RNF4-222ENST00000541204 SLC4A9Q96Q91 983 aa14.82□□□□□ -0.04
RNF4-222ENST00000541204 HAUS7Q99871 368 aa14.82□□□□□ -0.04
RNF4-222ENST00000541204 SNRKQ9NRH2 765 aa14.82□□□□□ -0.04
RNF4-222ENST00000541204 A0A1B0GUL7 405 aa14.81□□□□□ -0.04
RNF4-222ENST00000541204 EXOC5O00471 708 aa14.81□□□□□ -0.04
RNF4-222ENST00000541204 KRT85P78386 507 aa14.81□□□□□ -0.04
RNF4-222ENST00000541204 CAMK4Q16566 473 aa14.81□□□□□ -0.04
RNF4-222ENST00000541204 TAF7LQ5H9L4 462 aa14.81□□□□□ -0.04
RNF4-222ENST00000541204 SPC24Q8NBT2 197 aa14.81□□□□□ -0.04
RNF4-222ENST00000541204 LAMB4A4D0S4 1761 aa14.81□□□□□ -0.04
RNF4-222ENST00000541204 TNS2Q63HR2 1409 aa14.81□□□□□ -0.04
RNF4-222ENST00000541204 ABCA3Q99758 1704 aa14.81□□□□□ -0.04
RNF4-222ENST00000541204 MED23Q9ULK4 1368 aa14.81□□□□□ -0.04
RNF4-222ENST00000541204 CCDC192P0DO97 292 aa14.81□□□□□ -0.04
RNF4-222ENST00000541204 PSMA5P28066 241 aa14.81□□□□□ -0.04
RNF4-222ENST00000541204 IL15P40933 162 aaPredicted RBP14.81□□□□□ -0.04
RNF4-222ENST00000541204 RNF20Q5VTR2 975 aa14.81□□□□□ -0.04
RNF4-222ENST00000541204 BLOC1S2Q6QNY1 142 aa14.81□□□□□ -0.04
RNF4-222ENST00000541204 ISCA1Q9BUE6 129 aa14.81□□□□□ -0.04
RNF4-222ENST00000541204 LIG1P18858 919 aa14.8□□□□□ -0.04
RNF4-222ENST00000541204 FKBP4Q02790 459 aaKnown RBP eCLIP14.8□□□□□ -0.04
RNF4-222ENST00000541204 TBC1D2BQ9UPU7 963 aa14.8□□□□□ -0.04
RNF4-222ENST00000541204 ZNF609O15014 1411 aa14.8□□□□□ -0.04
RNF4-222ENST00000541204 KCNF1Q9H3M0 494 aa14.8□□□□□ -0.04
RNF4-222ENST00000541204 PAG1Q9NWQ8 432 aa14.8□□□□□ -0.04
RNF4-222ENST00000541204 ZBTB1Q9Y2K1 713 aa14.8□□□□□ -0.04
RNF4-222ENST00000541204 NUTM2BA6NNL0 878 aaPredicted RBP14.79□□□□□ -0.04
RNF4-222ENST00000541204 FAM177BA6PVY3 158 aa14.79□□□□□ -0.04
RNF4-222ENST00000541204 NUTM2EB1AL46 878 aaPredicted RBP14.79□□□□□ -0.04
RNF4-222ENST00000541204 GORABQ5T7V8 394 aa14.79□□□□□ -0.04
RNF4-222ENST00000541204 NUTM2AQ8IVF1 878 aaPredicted RBP14.79□□□□□ -0.04
RNF4-222ENST00000541204 ACSBG1Q96GR2 724 aa14.79□□□□□ -0.04
RNF4-222ENST00000541204 PRIMPOLQ96LW4 560 aa14.79□□□□□ -0.04
RNF4-222ENST00000541204 SPTLC3Q9NUV7 552 aa14.79□□□□□ -0.04
RNF4-222ENST00000541204 CEP126Q9P2H0 1117 aa14.79□□□□□ -0.04
RNF4-222ENST00000541204 SHANK3Q9BYB0 1731 aa14.79□□□□□ -0.04
RNF4-222ENST00000541204 IFIT1P09914 478 aaKnown RBP14.79□□□□□ -0.04
RNF4-222ENST00000541204 ADORA1P30542 326 aa14.79□□□□□ -0.04
RNF4-222ENST00000541204 MTERF4Q7Z6M4 381 aaKnown RBP14.79□□□□□ -0.04
RNF4-222ENST00000541204 PKNOX2Q96KN3 472 aa14.79□□□□□ -0.04
RNF4-222ENST00000541204 LRRC2Q9BYS8 371 aa14.79□□□□□ -0.04
RNF4-222ENST00000541204 TFIP11Q9UBB9 837 aaKnown RBP14.79□□□□□ -0.04
RNF4-222ENST00000541204 TOGARAM1Q9Y4F4 1720 aa14.79□□□□□ -0.04
RNF4-222ENST00000541204 RPS6KB1P23443 525 aa14.79□□□□□ -0.04
RNF4-222ENST00000541204 TOB2Q14106 344 aaPredicted RBP14.79□□□□□ -0.04
RNF4-222ENST00000541204 MCMDC2Q4G0Z9 681 aa14.79□□□□□ -0.04
RNF4-222ENST00000541204 KBTBD3Q8NAB2 608 aa14.79□□□□□ -0.04
RNF4-222ENST00000541204 NUP62CLQ9H1M0 184 aa14.79□□□□□ -0.04
RNF4-222ENST00000541204 PYCARDQ9ULZ3 195 aa14.79□□□□□ -0.04
RNF4-222ENST00000541204 UBR2Q8IWV8 1755 aa14.78□□□□□ -0.04
RNF4-222ENST00000541204 PDCP20941 246 aa14.78□□□□□ -0.04
RNF4-222ENST00000541204 MAP3K11Q16584 847 aa14.78□□□□□ -0.04
RNF4-222ENST00000541204 HMGN5P82970 282 aaKnown RBP14.78□□□□□ -0.04
RNF4-222ENST00000541204 ANKRD1Q15327 319 aa14.78□□□□□ -0.04
RNF4-222ENST00000541204 CKAP2LQ8IYA6 745 aa14.78□□□□□ -0.04
RNF4-222ENST00000541204 KLHL34Q8N239 644 aa14.78□□□□□ -0.04
RNF4-222ENST00000541204 TEX13AQ9BXU3 409 aaPredicted RBP14.78□□□□□ -0.04
RNF4-222ENST00000541204 MRVI1Q9Y6F6 885 aa14.78□□□□□ -0.04
RNF4-222ENST00000541204 IFIT5Q13325 482 aaKnown RBP14.77□□□□□ -0.04
RNF4-222ENST00000541204 HSP90AB3PQ58FF7 597 aa14.77□□□□□ -0.04
RNF4-222ENST00000541204 LUZP1Q86V48 1076 aa14.77□□□□□ -0.04
RNF4-222ENST00000541204 KIAA1524Q8TCG1 905 aa14.77□□□□□ -0.04
RNF4-222ENST00000541204 FAM200AQ8TCP9 573 aa14.77□□□□□ -0.04
RNF4-222ENST00000541204 DACT1Q9NYF0 836 aa14.77□□□□□ -0.04
RNF4-222ENST00000541204 ELP1O95163 1332 aa14.77□□□□□ -0.04
RNF4-222ENST00000541204 MAP3K15Q6ZN16 1313 aa14.77□□□□□ -0.04
RNF4-222ENST00000541204 A0A0G2JLW4 131 aa14.77□□□□□ -0.05
RNF4-222ENST00000541204 CYP19A1P11511 503 aaPredicted RBP14.77□□□□□ -0.05
RNF4-222ENST00000541204 TYRO3Q06418 890 aa14.77□□□□□ -0.05
RNF4-222ENST00000541204 PI16Q6UXB8 463 aa14.77□□□□□ -0.05
RNF4-222ENST00000541204 CYP21A2P08686 494 aa14.76□□□□□ -0.05
RNF4-222ENST00000541204 GIGYF2Q6Y7W6 1299 aaKnown RBP14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms