RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 PTPRCP08575 1304 aa14.67□□□□□ -0.06
RTN3-209ENST00000538995 PASKQ96RG2 1323 aa14.67□□□□□ -0.06
RTN3-209ENST00000538995 MYH3P11055 1940 aa14.67□□□□□ -0.06
RTN3-209ENST00000538995 RAD17O75943 681 aa14.67□□□□□ -0.06
RTN3-209ENST00000538995 CT47B1P0C2W7 299 aaPredicted RBP14.67□□□□□ -0.06
RTN3-209ENST00000538995 ATP2B4P23634 1241 aa14.67□□□□□ -0.06
RTN3-209ENST00000538995 IGHMBP2P38935 993 aaKnown RBP14.67□□□□□ -0.06
RTN3-209ENST00000538995 EPS15P42566 896 aa14.67□□□□□ -0.06
RTN3-209ENST00000538995 GMPSP49915 693 aaPredicted RBP14.67□□□□□ -0.06
RTN3-209ENST00000538995 TRMT2AQ8IZ69 625 aaKnown RBP14.67□□□□□ -0.06
RTN3-209ENST00000538995 ZC3H12CQ9C0D7 883 aaKnown RBP14.67□□□□□ -0.06
RTN3-209ENST00000538995 CREBZFQ9NS37 354 aa14.67□□□□□ -0.06
RTN3-209ENST00000538995 ADARB2Q9NS39 739 aaKnown RBP14.67□□□□□ -0.06
RTN3-209ENST00000538995 GRM8O00222 908 aa14.66□□□□□ -0.06
RTN3-209ENST00000538995 ECE2O60344 883 aa14.66□□□□□ -0.06
RTN3-209ENST00000538995 ITGA6P23229 1130 aa14.66□□□□□ -0.06
RTN3-209ENST00000538995 FAM161AQ3B820 660 aa14.66□□□□□ -0.06
RTN3-209ENST00000538995 MRPL50Q8N5N7 158 aaKnown RBP14.66□□□□□ -0.06
RTN3-209ENST00000538995 SRCIN1Q9C0H9 1055 aa14.66□□□□□ -0.06
RTN3-209ENST00000538995 DBNDD1Q9H9R9 158 aa14.66□□□□□ -0.06
RTN3-209ENST00000538995 CLEC11AQ9Y240 323 aa14.66□□□□□ -0.06
RTN3-209ENST00000538995 RIMBP2O15034 1052 aa14.65□□□□□ -0.06
RTN3-209ENST00000538995 ITGBL1O95965 494 aaPredicted RBP14.65□□□□□ -0.06
RTN3-209ENST00000538995 RPS12P25398 132 aaKnown RBP14.65□□□□□ -0.06
RTN3-209ENST00000538995 HTRA3P83110 453 aa14.65□□□□□ -0.06
RTN3-209ENST00000538995 ALDH1L2Q3SY69 923 aa14.65□□□□□ -0.06
RTN3-209ENST00000538995 DPF2Q92785 391 aa14.65□□□□□ -0.06
RTN3-209ENST00000538995 BCL2L13Q9BXK5 485 aa14.65□□□□□ -0.06
RTN3-209ENST00000538995 MINPP1Q9UNW1 487 aa14.65□□□□□ -0.06
RTN3-209ENST00000538995 ZNF609O15014 1411 aa14.65□□□□□ -0.06
RTN3-209ENST00000538995 MED23Q9ULK4 1368 aa14.64□□□□□ -0.07
RTN3-209ENST00000538995 PSMD14O00487 310 aa14.64□□□□□ -0.07
RTN3-209ENST00000538995 CNTROBQ8N137 903 aa14.64□□□□□ -0.07
RTN3-209ENST00000538995 JMYQ8N9B5 988 aa14.64□□□□□ -0.07
RTN3-209ENST00000538995 SSH1Q8WYL5 1049 aa14.64□□□□□ -0.07
RTN3-209ENST00000538995 CDCA7LQ96GN5 454 aa14.64□□□□□ -0.07
RTN3-209ENST00000538995 C9orf78Q9NZ63 289 aaPredicted RBP14.64□□□□□ -0.07
RTN3-209ENST00000538995 ANKRD18BA2A2Z9 1011 aa14.63□□□□□ -0.07
RTN3-209ENST00000538995 G3V3G9 751 aa14.63□□□□□ -0.07
RTN3-209ENST00000538995 FOXO4P98177 505 aa14.63□□□□□ -0.07
RTN3-209ENST00000538995 DOK7Q18PE1 504 aa14.63□□□□□ -0.07
RTN3-209ENST00000538995 DCAF8Q5TAQ9 597 aa14.63□□□□□ -0.07
RTN3-209ENST00000538995 MAP1SQ66K74 1059 aaPredicted RBP14.63□□□□□ -0.07
RTN3-209ENST00000538995 DIEXFQ68CQ4 756 aaKnown RBP14.63□□□□□ -0.07
RTN3-209ENST00000538995 SLC4A10Q6U841 1118 aa14.63□□□□□ -0.07
RTN3-209ENST00000538995 GPR101Q96P66 508 aaPredicted RBP14.63□□□□□ -0.07
RTN3-209ENST00000538995 MPHOSPH8Q99549 860 aa14.63□□□□□ -0.07
RTN3-209ENST00000538995 ANKRD2Q9GZV1 360 aa14.63□□□□□ -0.07
RTN3-209ENST00000538995 LEMD3Q9Y2U8 911 aa14.63□□□□□ -0.07
RTN3-209ENST00000538995 UTYO14607 1347 aa14.63□□□□□ -0.07
RTN3-209ENST00000538995 CCT4P50991 539 aaKnown RBP14.62□□□□□ -0.07
RTN3-209ENST00000538995 IFIT5Q13325 482 aaKnown RBP14.62□□□□□ -0.07
RTN3-209ENST00000538995 PODNQ7Z5L7 613 aa14.62□□□□□ -0.07
RTN3-209ENST00000538995 ZC3H15Q8WU90 426 aaKnown RBP14.62□□□□□ -0.07
RTN3-209ENST00000538995 TMEM88BA6NKF7 163 aa14.61□□□□□ -0.07
RTN3-209ENST00000538995 H7C1D1 291 aa14.61□□□□□ -0.07
RTN3-209ENST00000538995 VIL1P09327 827 aaKnown RBP14.61□□□□□ -0.07
RTN3-209ENST00000538995 BRPF1P55201 1214 aaPredicted RBP14.61□□□□□ -0.07
RTN3-209ENST00000538995 MICALL2Q8IY33 904 aa14.61□□□□□ -0.07
RTN3-209ENST00000538995 SMC4Q9NTJ3 1288 aa14.61□□□□□ -0.07
RTN3-209ENST00000538995 PGAP2Q9UHJ9 254 aa14.61□□□□□ -0.07
RTN3-209ENST00000538995 CNOT7Q9UIV1 285 aaKnown RBP14.61□□□□□ -0.07
RTN3-209ENST00000538995 CCDC57Q2TAC2 916 aa14.6□□□□□ -0.07
RTN3-209ENST00000538995 LMBR1LQ6UX01 489 aa14.6□□□□□ -0.07
RTN3-209ENST00000538995 ZBTB12Q9Y330 459 aaPredicted RBP14.6□□□□□ -0.07
RTN3-209ENST00000538995 CHMP3Q9Y3E7 222 aa14.6□□□□□ -0.07
RTN3-209ENST00000538995 CHRNDQ07001 517 aa14.59□□□□□ -0.07
RTN3-209ENST00000538995 EPHA10Q5JZY3 1008 aa14.59□□□□□ -0.07
RTN3-209ENST00000538995 AGBL3Q8NEM8 1001 aa14.59□□□□□ -0.07
RTN3-209ENST00000538995 TRPM4Q8TD43 1214 aa14.59□□□□□ -0.07
RTN3-209ENST00000538995 COA1Q9GZY4 146 aa14.59□□□□□ -0.07
RTN3-209ENST00000538995 KCNQ5Q9NR82 932 aa14.59□□□□□ -0.07
RTN3-209ENST00000538995 ZNF804BA4D1E1 1349 aa14.59□□□□□ -0.07
RTN3-209ENST00000538995 CNTNAP1P78357 1384 aa14.59□□□□□ -0.07
RTN3-209ENST00000538995 SPEF2Q9C093 1822 aa14.58□□□□□ -0.08
RTN3-209ENST00000538995 USP17L3A6NCW0 530 aa14.58□□□□□ -0.08
RTN3-209ENST00000538995 USP17L4A6NCW7 530 aa14.58□□□□□ -0.08
RTN3-209ENST00000538995 NBPF7P0C2Y1 421 aaPredicted RBP14.58□□□□□ -0.08
RTN3-209ENST00000538995 RSBN1LQ6PCB5 846 aaPredicted RBP14.58□□□□□ -0.08
RTN3-209ENST00000538995 C15orf52Q6ZUT6 534 aaKnown RBP14.58□□□□□ -0.08
RTN3-209ENST00000538995 USP17L1Q7RTZ2 530 aa14.58□□□□□ -0.08
RTN3-209ENST00000538995 MIER1Q8N108 512 aa14.58□□□□□ -0.08
RTN3-209ENST00000538995 SUCLG2Q96I99 432 aa14.58□□□□□ -0.08
RTN3-209ENST00000538995 SCN9AQ15858 1988 aa14.57□□□□□ -0.08
RTN3-209ENST00000538995 SHTN1A0MZ66 631 aa14.57□□□□□ -0.08
RTN3-209ENST00000538995 KCNJ4P48050 445 aa14.57□□□□□ -0.08
RTN3-209ENST00000538995 HIRAP54198 1017 aaPredicted RBP14.57□□□□□ -0.08
RTN3-209ENST00000538995 RABL6Q3YEC7 729 aaPredicted RBP14.57□□□□□ -0.08
RTN3-209ENST00000538995 TAF7LQ5H9L4 462 aa14.57□□□□□ -0.08
RTN3-209ENST00000538995 RASSF10A6NK89 507 aa14.56□□□□□ -0.08
RTN3-209ENST00000538995 ZNF280AP59817 542 aaPredicted RBP14.56□□□□□ -0.08
RTN3-209ENST00000538995 LDHAL6AQ6ZMR3 332 aa14.56□□□□□ -0.08
RTN3-209ENST00000538995 KAZALD1Q96I82 304 aa14.56□□□□□ -0.08
RTN3-209ENST00000538995 GMLQ99445 158 aa14.56□□□□□ -0.08
RTN3-209ENST00000538995 API5Q9BZZ5 524 aaKnown RBP14.56□□□□□ -0.08
RTN3-209ENST00000538995 PSME4Q14997 1843 aa14.56□□□□□ -0.08
RTN3-209ENST00000538995 MYO3BQ8WXR4 1341 aa14.56□□□□□ -0.08
RTN3-209ENST00000538995 KIF16BQ96L93 1317 aa14.56□□□□□ -0.08
RTN3-209ENST00000538995 PCNTO95613 3336 aa14.56□□□□□ -0.08
RTN3-209ENST00000538995 WTIPA6NIX2 430 aaPredicted RBP14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms