RNA–Protein interactions for RNA: ENST00000535313.1

CLSTN3-204, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 787 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-204ENST00000535313 FKBP5Q13451 457 aaPredicted RBP20.7■□□□□ 0.9
CLSTN3-204ENST00000535313 DOK7Q18PE1 504 aa20.7■□□□□ 0.9
CLSTN3-204ENST00000535313 DEFB115Q30KQ5 88 aa20.7■□□□□ 0.9
CLSTN3-204ENST00000535313 DCAF8Q5TAQ9 597 aa20.7■□□□□ 0.9
CLSTN3-204ENST00000535313 CDC5LQ99459 802 aaKnown RBP20.7■□□□□ 0.9
CLSTN3-204ENST00000535313 RASSF10A6NK89 507 aa20.69■□□□□ 0.9
CLSTN3-204ENST00000535313 PSMD14O00487 310 aa20.69■□□□□ 0.9
CLSTN3-204ENST00000535313 VAMP4O75379 141 aa20.69■□□□□ 0.9
CLSTN3-204ENST00000535313 EXOSC9Q06265 439 aaKnown RBP20.69■□□□□ 0.9
CLSTN3-204ENST00000535313 COL13A1Q5TAT6 717 aaPredicted RBP20.69■□□□□ 0.9
CLSTN3-204ENST00000535313 MICALL2Q8IY33 904 aa20.69■□□□□ 0.9
CLSTN3-204ENST00000535313 ZC3H15Q8WU90 426 aaKnown RBP20.69■□□□□ 0.9
CLSTN3-204ENST00000535313 GPR101Q96P66 508 aaPredicted RBP20.69■□□□□ 0.9
CLSTN3-204ENST00000535313 ZBTB12Q9Y330 459 aaPredicted RBP20.69■□□□□ 0.9
CLSTN3-204ENST00000535313 UBE3BQ7Z3V4 1068 aa20.68■□□□□ 0.9
CLSTN3-204ENST00000535313 TTLL11Q8NHH1 800 aa20.68■□□□□ 0.9
CLSTN3-204ENST00000535313 DPF2Q92785 391 aa20.68■□□□□ 0.9
CLSTN3-204ENST00000535313 H7C1W4 665 aa20.67■□□□□ 0.9
CLSTN3-204ENST00000535313 TRAF5O00463 557 aa20.67■□□□□ 0.9
CLSTN3-204ENST00000535313 RPS12P25398 132 aaKnown RBP20.67■□□□□ 0.9
CLSTN3-204ENST00000535313 FMR1Q06787 632 aaKnown RBP eCLIP20.67■□□□□ 0.9
CLSTN3-204ENST00000535313 DNAAF4Q8WXU2 420 aa20.67■□□□□ 0.9
CLSTN3-204ENST00000535313 MYH16Q9H6N6 1097 aa20.67■□□□□ 0.9
CLSTN3-204ENST00000535313 XDHP47989 1333 aa20.67■□□□□ 0.9
CLSTN3-204ENST00000535313 GCKRQ14397 625 aa20.66■□□□□ 0.9
CLSTN3-204ENST00000535313 TRPM4Q8TD43 1214 aa20.66■□□□□ 0.9
CLSTN3-204ENST00000535313 GREM2Q9H772 168 aa20.66■□□□□ 0.9
CLSTN3-204ENST00000535313 PGAP2Q9UHJ9 254 aa20.66■□□□□ 0.9
CLSTN3-204ENST00000535313 SHTN1A0MZ66 631 aa20.65■□□□□ 0.9
CLSTN3-204ENST00000535313 ATP2B4P23634 1241 aa20.65■□□□□ 0.9
CLSTN3-204ENST00000535313 HIRAP54198 1017 aaPredicted RBP20.65■□□□□ 0.9
CLSTN3-204ENST00000535313 LINS1Q8NG48 757 aa20.65■□□□□ 0.9
CLSTN3-204ENST00000535313 AIDAQ96BJ3 306 aa20.65■□□□□ 0.9
CLSTN3-204ENST00000535313 KCNQ5Q9NR82 932 aa20.65■□□□□ 0.9
CLSTN3-204ENST00000535313 RTL9Q8NET4 1388 aa20.64■□□□□ 0.89
CLSTN3-204ENST00000535313 CST9Q5W186 159 aa20.64■□□□□ 0.89
CLSTN3-204ENST00000535313 PAXIP1Q6ZW49 1069 aaPredicted RBP20.64■□□□□ 0.89
CLSTN3-204ENST00000535313 CDC37L1Q7L3B6 337 aa20.64■□□□□ 0.89
CLSTN3-204ENST00000535313 GLIS2Q9BZE0 524 aaPredicted RBP20.64■□□□□ 0.89
CLSTN3-204ENST00000535313 SPINK5Q9NQ38 1064 aaPredicted RBP20.64■□□□□ 0.89
CLSTN3-204ENST00000535313 BSDC1Q9NW68 430 aaPredicted RBP20.64■□□□□ 0.89
CLSTN3-204ENST00000535313 CACNA1FO60840 1977 aa20.64■□□□□ 0.89
CLSTN3-204ENST00000535313 WDR33Q9C0J8 1336 aaKnown RBP20.63■□□□□ 0.89
CLSTN3-204ENST00000535313 IGHMBP2P38935 993 aaKnown RBP20.63■□□□□ 0.89
CLSTN3-204ENST00000535313 SAMD7Q7Z3H4 446 aa20.63■□□□□ 0.89
CLSTN3-204ENST00000535313 PLA2G12BQ9BX93 195 aa20.63■□□□□ 0.89
CLSTN3-204ENST00000535313 MYH3P11055 1940 aa20.63■□□□□ 0.89
CLSTN3-204ENST00000535313 CELF2O95319 508 aaKnown RBP20.62■□□□□ 0.89
CLSTN3-204ENST00000535313 VIL1P09327 827 aaKnown RBP20.62■□□□□ 0.89
CLSTN3-204ENST00000535313 ECE1P42892 770 aa20.62■□□□□ 0.89
CLSTN3-204ENST00000535313 TBC1D10BQ4KMP7 808 aaPredicted RBP20.62■□□□□ 0.89
CLSTN3-204ENST00000535313 TNS4Q8IZW8 715 aa20.62■□□□□ 0.89
CLSTN3-204ENST00000535313 MINPP1Q9UNW1 487 aa20.62■□□□□ 0.89
CLSTN3-204ENST00000535313 TRPM7Q96QT4 1865 aa20.62■□□□□ 0.89
CLSTN3-204ENST00000535313 RBM26Q5T8P6 1007 aaKnown RBP20.61■□□□□ 0.89
CLSTN3-204ENST00000535313 TLL2Q9Y6L7 1015 aa20.61■□□□□ 0.89
CLSTN3-204ENST00000535313 CASP7P55210 303 aa20.6■□□□□ 0.89
CLSTN3-204ENST00000535313 CAPNS2Q96L46 248 aa20.6■□□□□ 0.89
CLSTN3-204ENST00000535313 ZNF408Q9H9D4 720 aa20.6■□□□□ 0.89
CLSTN3-204ENST00000535313 F6X3S4 739 aa20.59■□□□□ 0.89
CLSTN3-204ENST00000535313 FOXN1O15353 648 aa20.59■□□□□ 0.89
CLSTN3-204ENST00000535313 ITGA6P23229 1130 aa20.59■□□□□ 0.89
CLSTN3-204ENST00000535313 MAP2K1Q02750 393 aaPredicted RBP20.59■□□□□ 0.89
CLSTN3-204ENST00000535313 FAM161AQ3B820 660 aa20.59■□□□□ 0.89
CLSTN3-204ENST00000535313 PODNQ7Z5L7 613 aa20.59■□□□□ 0.89
CLSTN3-204ENST00000535313 USP48Q86UV5 1035 aa20.59■□□□□ 0.89
CLSTN3-204ENST00000535313 MPHOSPH8Q99549 860 aa20.59■□□□□ 0.89
CLSTN3-204ENST00000535313 WBP1LQ9NX94 342 aa20.59■□□□□ 0.89
CLSTN3-204ENST00000535313 CSF1RP07333 972 aa20.58■□□□□ 0.89
CLSTN3-204ENST00000535313 CTCFP49711 727 aaPredicted RBP20.58■□□□□ 0.89
CLSTN3-204ENST00000535313 CCT4P50991 539 aaKnown RBP20.58■□□□□ 0.89
CLSTN3-204ENST00000535313 GRM1Q13255 1194 aa20.58■□□□□ 0.89
CLSTN3-204ENST00000535313 KIF4BQ2VIQ3 1234 aa20.58■□□□□ 0.89
CLSTN3-204ENST00000535313 CYP4F22Q6NT55 531 aa20.58■□□□□ 0.89
CLSTN3-204ENST00000535313 RSBN1LQ6PCB5 846 aaPredicted RBP20.58■□□□□ 0.89
CLSTN3-204ENST00000535313 AGBL3Q8NEM8 1001 aa20.58■□□□□ 0.89
CLSTN3-204ENST00000535313 DCPSQ96C86 337 aaKnown RBP20.58■□□□□ 0.89
CLSTN3-204ENST00000535313 MED23Q9ULK4 1368 aa20.58■□□□□ 0.88
CLSTN3-204ENST00000535313 SCN9AQ15858 1988 aa20.57■□□□□ 0.88
CLSTN3-204ENST00000535313 USP17L3A6NCW0 530 aa20.57■□□□□ 0.88
CLSTN3-204ENST00000535313 USP17L4A6NCW7 530 aa20.57■□□□□ 0.88
CLSTN3-204ENST00000535313 EGFRP00533 1210 aa20.57■□□□□ 0.88
CLSTN3-204ENST00000535313 BEND3Q5T5X7 828 aa20.57■□□□□ 0.88
CLSTN3-204ENST00000535313 USP17L1Q7RTZ2 530 aa20.57■□□□□ 0.88
CLSTN3-204ENST00000535313 KRT26Q7Z3Y9 468 aa20.57■□□□□ 0.88
CLSTN3-204ENST00000535313 SAPCD2Q86UD0 394 aa20.57■□□□□ 0.88
CLSTN3-204ENST00000535313 ANKRD2Q9GZV1 360 aa20.57■□□□□ 0.88
CLSTN3-204ENST00000535313 LEMD3Q9Y2U8 911 aa20.57■□□□□ 0.88
CLSTN3-204ENST00000535313 ANKRD18BA2A2Z9 1011 aa20.56■□□□□ 0.88
CLSTN3-204ENST00000535313 SPEF2Q9C093 1822 aa20.55■□□□□ 0.88
CLSTN3-204ENST00000535313 ZNF609O15014 1411 aa20.55■□□□□ 0.88
CLSTN3-204ENST00000535313 WTIPA6NIX2 430 aaPredicted RBP20.55■□□□□ 0.88
CLSTN3-204ENST00000535313 HHIPL1Q96JK4 782 aa20.55■□□□□ 0.88
CLSTN3-204ENST00000535313 PRDM10Q9NQV6 1147 aa20.55■□□□□ 0.88
CLSTN3-204ENST00000535313 CHMP3Q9Y3E7 222 aa20.55■□□□□ 0.88
CLSTN3-204ENST00000535313 ZNF521Q96K83 1311 aa20.54■□□□□ 0.88
CLSTN3-204ENST00000535313 USP17L8P0C7I0 530 aa20.54■□□□□ 0.88
CLSTN3-204ENST00000535313 KCNJ4P48050 445 aa20.54■□□□□ 0.88
CLSTN3-204ENST00000535313 ZNF280AP59817 542 aaPredicted RBP20.54■□□□□ 0.88
CLSTN3-204ENST00000535313 BEGAINQ9BUH8 593 aa20.54■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms