RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 NOP53Q9NZM5 478 aaKnown RBP7.84□□□□□ -1.15
CD44-217ENST00000525348 FRRS1LQ9P0K9 344 aa7.84□□□□□ -1.15
CD44-217ENST00000525348 CNTN3Q9P232 1028 aa7.84□□□□□ -1.15
CD44-217ENST00000525348 PDE12Q6L8Q7 609 aaKnown RBP7.83□□□□□ -1.16
CD44-217ENST00000525348 ELMSAN1Q6PJG2 1045 aa7.83□□□□□ -1.16
CD44-217ENST00000525348 ABI2Q9NYB9 513 aaPredicted RBP7.83□□□□□ -1.16
CD44-217ENST00000525348 ARHGAP4P98171 946 aa7.82□□□□□ -1.16
CD44-217ENST00000525348 C8orf34Q49A92 452 aa7.82□□□□□ -1.16
CD44-217ENST00000525348 TTC39BQ5VTQ0 682 aaPredicted RBP7.82□□□□□ -1.16
CD44-217ENST00000525348 GPAT2Q6NUI2 795 aa7.82□□□□□ -1.16
CD44-217ENST00000525348 XKR5Q6UX68 686 aa7.82□□□□□ -1.16
CD44-217ENST00000525348 ZNF438Q7Z4V0 828 aa7.82□□□□□ -1.16
CD44-217ENST00000525348 PLD4Q96BZ4 506 aa7.82□□□□□ -1.16
CD44-217ENST00000525348 CHRNA4P43681 627 aa7.81□□□□□ -1.16
CD44-217ENST00000525348 PDE4CQ08493 712 aa7.81□□□□□ -1.16
CD44-217ENST00000525348 AAMPQ13685 434 aa7.81□□□□□ -1.16
CD44-217ENST00000525348 ADAMTSL4Q6UY14 1074 aa7.81□□□□□ -1.16
CD44-217ENST00000525348 ALYREFQ86V81 257 aaKnown RBP7.81□□□□□ -1.16
CD44-217ENST00000525348 GLYCTKQ8IVS8 523 aa7.81□□□□□ -1.16
CD44-217ENST00000525348 GJD3Q8N144 294 aa7.81□□□□□ -1.16
CD44-217ENST00000525348 C1orf127Q8N9H9 656 aa7.81□□□□□ -1.16
CD44-217ENST00000525348 TTC9Q92623 222 aa7.81□□□□□ -1.16
CD44-217ENST00000525348 CHRDQ9H2X0 955 aa7.81□□□□□ -1.16
CD44-217ENST00000525348 KANSL3Q9P2N6 904 aa7.81□□□□□ -1.16
CD44-217ENST00000525348 KIF4AO95239 1232 aa7.8□□□□□ -1.16
CD44-217ENST00000525348 ATP11AP98196 1134 aa7.8□□□□□ -1.16
CD44-217ENST00000525348 TRAPPC3LQ5T215 181 aa7.8□□□□□ -1.16
CD44-217ENST00000525348 CD163Q86VB7 1156 aa7.8□□□□□ -1.16
CD44-217ENST00000525348 DMRTC2Q8IXT2 367 aaPredicted RBP7.8□□□□□ -1.16
CD44-217ENST00000525348 A0A0A0MRY4 1105 aa7.79□□□□□ -1.16
CD44-217ENST00000525348 C1QTNF9BB2RNN3 333 aa7.79□□□□□ -1.16
CD44-217ENST00000525348 BRD1O95696 1058 aa7.79□□□□□ -1.16
CD44-217ENST00000525348 GHRHP01286 108 aa7.79□□□□□ -1.16
CD44-217ENST00000525348 PROCP04070 461 aa7.79□□□□□ -1.16
CD44-217ENST00000525348 RPLP1P05386 114 aaKnown RBP7.79□□□□□ -1.16
CD44-217ENST00000525348 SPATA31C1P0DKV0 1188 aa7.79□□□□□ -1.16
CD44-217ENST00000525348 ACPPP15309 386 aa7.79□□□□□ -1.16
CD44-217ENST00000525348 PCSK2P16519 638 aa7.79□□□□□ -1.16
CD44-217ENST00000525348 BAG6P46379 1132 aa7.79□□□□□ -1.16
CD44-217ENST00000525348 HYAL2Q12891 473 aa7.79□□□□□ -1.16
CD44-217ENST00000525348 FOXD3Q9UJU5 478 aaPredicted RBP7.79□□□□□ -1.16
CD44-217ENST00000525348 TRIM33Q9UPN9 1127 aa7.79□□□□□ -1.16
CD44-217ENST00000525348 GRIK4Q16099 956 aa7.78□□□□□ -1.16
CD44-217ENST00000525348 MSL1Q68DK7 614 aa7.78□□□□□ -1.16
CD44-217ENST00000525348 CEP120Q8N960 986 aa7.78□□□□□ -1.16
CD44-217ENST00000525348 SPOCK3Q9BQ16 436 aa7.78□□□□□ -1.16
CD44-217ENST00000525348 SALL4Q9UJQ4 1053 aa7.78□□□□□ -1.16
CD44-217ENST00000525348 TNFRSF21O75509 655 aa7.77□□□□□ -1.17
CD44-217ENST00000525348 CCER1Q8TC90 406 aaPredicted RBP7.77□□□□□ -1.17
CD44-217ENST00000525348 RASSF4Q9H2L5 321 aa7.77□□□□□ -1.17
CD44-217ENST00000525348 GNEQ9Y223 722 aaKnown RBP7.77□□□□□ -1.17
CD44-217ENST00000525348 SOWAHDA6NJG2 315 aa7.76□□□□□ -1.17
CD44-217ENST00000525348 SPDYE3A6NKU9 549 aa7.76□□□□□ -1.17
CD44-217ENST00000525348 EREGO14944 169 aa7.76□□□□□ -1.17
CD44-217ENST00000525348 TRIM28Q13263 835 aaKnown RBP7.76□□□□□ -1.17
CD44-217ENST00000525348 PRRT3Q5FWE3 981 aa7.76□□□□□ -1.17
CD44-217ENST00000525348 GDF6Q6KF10 455 aaPredicted RBP7.76□□□□□ -1.17
CD44-217ENST00000525348 FMR1NBQ8N0W7 255 aaPredicted RBP7.76□□□□□ -1.17
CD44-217ENST00000525348 DEAF1O75398 565 aaPredicted RBP7.75□□□□□ -1.17
CD44-217ENST00000525348 TRPA1O75762 1119 aa7.75□□□□□ -1.17
CD44-217ENST00000525348 CES1P23141 567 aa7.75□□□□□ -1.17
CD44-217ENST00000525348 USP5P45974 858 aa7.75□□□□□ -1.17
CD44-217ENST00000525348 WFDC8Q8IUA0 241 aa7.75□□□□□ -1.17
CD44-217ENST00000525348 HHIPQ96QV1 700 aa7.75□□□□□ -1.17
CD44-217ENST00000525348 NFKBIEO00221 500 aa7.74□□□□□ -1.17
CD44-217ENST00000525348 MSTNO14793 375 aa7.74□□□□□ -1.17
CD44-217ENST00000525348 IGHA2P01877 340 aa7.74□□□□□ -1.17
CD44-217ENST00000525348 SELPP16109 830 aa7.74□□□□□ -1.17
CD44-217ENST00000525348 CEP135Q66GS9 1140 aa7.74□□□□□ -1.17
CD44-217ENST00000525348 SHISA2Q6UWI4 295 aa7.74□□□□□ -1.17
CD44-217ENST00000525348 NCAPG2Q86XI2 1143 aa7.74□□□□□ -1.17
CD44-217ENST00000525348 TTC16Q8NEE8 873 aa7.74□□□□□ -1.17
CD44-217ENST00000525348 SNX29Q8TEQ0 813 aa7.74□□□□□ -1.17
CD44-217ENST00000525348 PBX4Q9BYU1 374 aa7.74□□□□□ -1.17
CD44-217ENST00000525348 RBSNQ9H1K0 784 aa7.74□□□□□ -1.17
CD44-217ENST00000525348 BRPF3Q9ULD4 1205 aa7.74□□□□□ -1.17
CD44-217ENST00000525348 PHACTR2O75167 634 aa7.73□□□□□ -1.17
CD44-217ENST00000525348 IGHA1P01876 353 aa7.73□□□□□ -1.17
CD44-217ENST00000525348 ELNP15502 786 aa7.73□□□□□ -1.17
CD44-217ENST00000525348 EHHADHQ08426 723 aa7.73□□□□□ -1.17
CD44-217ENST00000525348 IL22RA1Q8N6P7 574 aa7.73□□□□□ -1.17
CD44-217ENST00000525348 SPACA7Q96KW9 195 aa7.73□□□□□ -1.17
CD44-217ENST00000525348 FAM129BQ96TA1 746 aa7.73□□□□□ -1.17
CD44-217ENST00000525348 TRAIPQ9BWF2 469 aa7.73□□□□□ -1.17
CD44-217ENST00000525348 RAC1P63000 192 aa7.72□□□□□ -1.17
CD44-217ENST00000525348 FBXO11Q86XK2 927 aa7.72□□□□□ -1.17
CD44-217ENST00000525348 POP1Q99575 1024 aaKnown RBP7.72□□□□□ -1.17
CD44-217ENST00000525348 LACRTQ9GZZ8 138 aa7.72□□□□□ -1.17
CD44-217ENST00000525348 LATS2Q9NRM7 1088 aa7.72□□□□□ -1.17
CD44-217ENST00000525348 DZANK1Q9NVP4 752 aa7.72□□□□□ -1.17
CD44-217ENST00000525348 IVNS1ABPQ9Y6Y0 642 aa7.72□□□□□ -1.17
CD44-217ENST00000525348 GPR182O15218 404 aa7.71□□□□□ -1.18
CD44-217ENST00000525348 POLR3DP05423 398 aaPredicted RBP7.71□□□□□ -1.18
CD44-217ENST00000525348 USPL1Q5W0Q7 1092 aa7.71□□□□□ -1.18
CD44-217ENST00000525348 DTWD1Q8N5C7 304 aa7.71□□□□□ -1.18
CD44-217ENST00000525348 ZFYVE28Q9HCC9 887 aa7.71□□□□□ -1.18
CD44-217ENST00000525348 NDUFB5O43674 189 aa7.7□□□□□ -1.18
CD44-217ENST00000525348 SMNDC1O75940 238 aaKnown RBP eCLIP7.7□□□□□ -1.18
CD44-217ENST00000525348 APBA3O96018 575 aa7.7□□□□□ -1.18
CD44-217ENST00000525348 ORC1Q13415 861 aa7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms