RNA–Protein interactions for RNA: ENST00000523488.5

CSMD1-213, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 3,714 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-213ENST00000523488 TRMT1Q9NXH9 659 aaKnown RBP9.81□□□□□ -0.84
CSMD1-213ENST00000523488 NUP188Q5SRE5 1749 aa9.8□□□□□ -0.84
CSMD1-213ENST00000523488 IVLP07476 585 aa9.8□□□□□ -0.84
CSMD1-213ENST00000523488 ST5P78524 1137 aa9.8□□□□□ -0.84
CSMD1-213ENST00000523488 JAKMIP3Q5VZ66 844 aa9.8□□□□□ -0.84
CSMD1-213ENST00000523488 SMARCC2Q8TAQ2 1214 aa9.8□□□□□ -0.84
CSMD1-213ENST00000523488 UPF3BQ9BZI7 483 aaKnown RBP9.8□□□□□ -0.84
CSMD1-213ENST00000523488 DEF6Q9H4E7 631 aa9.8□□□□□ -0.84
CSMD1-213ENST00000523488 MKRN1Q9UHC7 482 aaKnown RBP9.8□□□□□ -0.84
CSMD1-213ENST00000523488 RRP15Q9Y3B9 282 aaKnown RBP9.8□□□□□ -0.84
CSMD1-213ENST00000523488 ZSCAN26Q16670 478 aa9.8□□□□□ -0.84
CSMD1-213ENST00000523488 ANO6Q4KMQ2 910 aa9.8□□□□□ -0.84
CSMD1-213ENST00000523488 LUZP1Q86V48 1076 aa9.8□□□□□ -0.84
CSMD1-213ENST00000523488 DHX37Q8IY37 1157 aaKnown RBP9.8□□□□□ -0.84
CSMD1-213ENST00000523488 AK7Q96M32 723 aa9.8□□□□□ -0.84
CSMD1-213ENST00000523488 AGXT2Q9BYV1 514 aa9.8□□□□□ -0.84
CSMD1-213ENST00000523488 CLIP2Q9UDT6 1046 aa9.8□□□□□ -0.84
CSMD1-213ENST00000523488 TJP1Q07157 1748 aa9.8□□□□□ -0.84
CSMD1-213ENST00000523488 COL15A1P39059 1388 aa9.8□□□□□ -0.84
CSMD1-213ENST00000523488 DLEC1Q9Y238 1755 aa9.8□□□□□ -0.84
CSMD1-213ENST00000523488 LRP6O75581 1613 aa9.8□□□□□ -0.84
CSMD1-213ENST00000523488 A0A1B0GUL7 405 aa9.8□□□□□ -0.84
CSMD1-213ENST00000523488 GOLGA6L19H0YKK7 550 aa9.8□□□□□ -0.84
CSMD1-213ENST00000523488 ARMCX5Q6P1M9 558 aa9.8□□□□□ -0.84
CSMD1-213ENST00000523488 VIPAS39Q9H9C1 493 aa9.8□□□□□ -0.84
CSMD1-213ENST00000523488 MRFAP1Q9Y605 127 aa9.8□□□□□ -0.84
CSMD1-213ENST00000523488 MYH7P12883 1935 aa9.8□□□□□ -0.84
CSMD1-213ENST00000523488 RAB11FIP3O75154 756 aa9.79□□□□□ -0.84
CSMD1-213ENST00000523488 CLSTN1O94985 981 aa9.79□□□□□ -0.84
CSMD1-213ENST00000523488 LRRFIP1Q32MZ4 808 aaKnown RBP9.79□□□□□ -0.84
CSMD1-213ENST00000523488 LEO1Q8WVC0 666 aaPredicted RBP9.79□□□□□ -0.84
CSMD1-213ENST00000523488 RCOR1Q9UKL0 485 aa9.79□□□□□ -0.84
CSMD1-213ENST00000523488 SMC3Q9UQE7 1217 aa9.79□□□□□ -0.84
CSMD1-213ENST00000523488 CCDC151A5D8V7 595 aa9.79□□□□□ -0.84
CSMD1-213ENST00000523488 NCAPHQ15003 741 aa9.79□□□□□ -0.84
CSMD1-213ENST00000523488 BRD3Q15059 726 aa9.79□□□□□ -0.84
CSMD1-213ENST00000523488 CAMK4Q16566 473 aa9.79□□□□□ -0.84
CSMD1-213ENST00000523488 RABGGTAQ92696 567 aa9.79□□□□□ -0.84
CSMD1-213ENST00000523488 MYH13Q9UKX3 1938 aa9.79□□□□□ -0.84
CSMD1-213ENST00000523488 TIAM2Q8IVF5 1701 aa9.79□□□□□ -0.84
CSMD1-213ENST00000523488 ANKRD33BA6NCL7 494 aa9.79□□□□□ -0.84
CSMD1-213ENST00000523488 NRDCO43847 1150 aa9.79□□□□□ -0.84
CSMD1-213ENST00000523488 ETF1P62495 437 aaKnown RBP9.79□□□□□ -0.84
CSMD1-213ENST00000523488 DNM1Q05193 864 aaKnown RBP9.79□□□□□ -0.84
CSMD1-213ENST00000523488 PKD1L3Q7Z443 1732 aa9.78□□□□□ -0.84
CSMD1-213ENST00000523488 CCP110O43303 1012 aa9.78□□□□□ -0.84
CSMD1-213ENST00000523488 GORABQ5T7V8 394 aa9.78□□□□□ -0.84
CSMD1-213ENST00000523488 TUBB2AQ13885 445 aa9.78□□□□□ -0.84
CSMD1-213ENST00000523488 UNC5CLQ8IV45 518 aa9.78□□□□□ -0.84
CSMD1-213ENST00000523488 RASEFQ8IZ41 740 aa9.78□□□□□ -0.84
CSMD1-213ENST00000523488 UBXN4Q92575 508 aa9.78□□□□□ -0.84
CSMD1-213ENST00000523488 TUBB2BQ9BVA1 445 aa9.78□□□□□ -0.84
CSMD1-213ENST00000523488 ATAD5Q96QE3 1844 aa9.78□□□□□ -0.84
CSMD1-213ENST00000523488 IKBKBO14920 756 aa9.78□□□□□ -0.84
CSMD1-213ENST00000523488 HMMRO75330 724 aa9.78□□□□□ -0.84
CSMD1-213ENST00000523488 PRPF6O94906 941 aaKnown RBP9.78□□□□□ -0.84
CSMD1-213ENST00000523488 MNS1Q8NEH6 495 aa9.78□□□□□ -0.84
CSMD1-213ENST00000523488 MEIS3Q99687 375 aa9.78□□□□□ -0.84
CSMD1-213ENST00000523488 NFAT5O94916 1531 aa9.77□□□□□ -0.84
CSMD1-213ENST00000523488 VPS37CA5D8V6 355 aaPredicted RBP9.77□□□□□ -0.85
CSMD1-213ENST00000523488 H3BQF6 201 aa9.77□□□□□ -0.85
CSMD1-213ENST00000523488 ISM2Q6H9L7 571 aa9.77□□□□□ -0.85
CSMD1-213ENST00000523488 LEKR1Q6ZMV7 388 aa9.77□□□□□ -0.85
CSMD1-213ENST00000523488 CKAP2LQ8IYA6 745 aa9.77□□□□□ -0.85
CSMD1-213ENST00000523488 RILPL2Q969X0 211 aa9.77□□□□□ -0.85
CSMD1-213ENST00000523488 DRC1Q96MC2 740 aa9.77□□□□□ -0.85
CSMD1-213ENST00000523488 MPHOSPH8Q99549 860 aa9.77□□□□□ -0.85
CSMD1-213ENST00000523488 TNMDQ9H2S6 317 aa9.77□□□□□ -0.85
CSMD1-213ENST00000523488 ARAP2Q8WZ64 1704 aa9.77□□□□□ -0.85
CSMD1-213ENST00000523488 TRIM66O15016 1216 aa9.77□□□□□ -0.85
CSMD1-213ENST00000523488 CCDC172P0C7W6 258 aa9.77□□□□□ -0.85
CSMD1-213ENST00000523488 STX1AQ16623 288 aa9.77□□□□□ -0.85
CSMD1-213ENST00000523488 ERCC6LQ2NKX8 1250 aa9.77□□□□□ -0.85
CSMD1-213ENST00000523488 BEND6Q5SZJ8 279 aaPredicted RBP9.77□□□□□ -0.85
CSMD1-213ENST00000523488 EFCAB13Q8IY85 973 aa9.77□□□□□ -0.85
CSMD1-213ENST00000523488 CEP83Q9Y592 693 aa9.77□□□□□ -0.85
CSMD1-213ENST00000523488 C5P01031 1676 aa9.77□□□□□ -0.85
CSMD1-213ENST00000523488 CCDC69A6NI79 296 aa9.77□□□□□ -0.85
CSMD1-213ENST00000523488 SKILP12757 684 aa9.77□□□□□ -0.85
CSMD1-213ENST00000523488 PRKAR2BP31323 418 aa9.77□□□□□ -0.85
CSMD1-213ENST00000523488 HOMER1Q86YM7 354 aa9.77□□□□□ -0.85
CSMD1-213ENST00000523488 ADAM21Q9UKJ8 722 aa9.77□□□□□ -0.85
CSMD1-213ENST00000523488 JRKLQ9Y4A0 524 aa9.77□□□□□ -0.85
CSMD1-213ENST00000523488 GJB2P29033 226 aa9.76□□□□□ -0.85
CSMD1-213ENST00000523488 KRT85P78386 507 aa9.76□□□□□ -0.85
CSMD1-213ENST00000523488 ARHGAP29Q52LW3 1261 aa9.76□□□□□ -0.85
CSMD1-213ENST00000523488 C11orf57Q6ZUT1 292 aaPredicted RBP9.76□□□□□ -0.85
CSMD1-213ENST00000523488 LRRCC1Q9C099 1032 aa9.76□□□□□ -0.85
CSMD1-213ENST00000523488 LTN1O94822 1766 aa9.76□□□□□ -0.85
CSMD1-213ENST00000523488 ADAMTSL3P82987 1691 aa9.76□□□□□ -0.85
CSMD1-213ENST00000523488 BECN2A8MW95 431 aa9.76□□□□□ -0.85
CSMD1-213ENST00000523488 LMAN1P49257 510 aa9.76□□□□□ -0.85
CSMD1-213ENST00000523488 TTC31Q49AM3 519 aaPredicted RBP9.76□□□□□ -0.85
CSMD1-213ENST00000523488 GRIPAP1Q4V328 841 aa9.76□□□□□ -0.85
CSMD1-213ENST00000523488 CT47A1Q5JQC4 288 aaPredicted RBP9.76□□□□□ -0.85
CSMD1-213ENST00000523488 CNPY4Q8N129 248 aa9.76□□□□□ -0.85
CSMD1-213ENST00000523488 BANK1Q8NDB2 785 aa9.76□□□□□ -0.85
CSMD1-213ENST00000523488 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.76□□□□□ -0.85
CSMD1-213ENST00000523488 UBR1Q8IWV7 1749 aa9.76□□□□□ -0.85
CSMD1-213ENST00000523488 A0A1W2PQ27 194 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms