RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 CCDC150Q8NCX0 1101 aa15.14■□□□□ 0.01
TCOF1-213ENST00000514442 HELBQ8NG08 1087 aaPredicted RBP15.14■□□□□ 0.01
TCOF1-213ENST00000514442 GPT2Q8TD30 523 aa15.14■□□□□ 0.01
TCOF1-213ENST00000514442 USP16Q9Y5T5 823 aa15.14■□□□□ 0.01
TCOF1-213ENST00000514442 ZBTB7BO15156 539 aaPredicted RBP15.14■□□□□ 0.01
TCOF1-213ENST00000514442 STX1AQ16623 288 aa15.14■□□□□ 0.01
TCOF1-213ENST00000514442 BICC1Q9H694 974 aaKnown RBP15.14■□□□□ 0.01
TCOF1-213ENST00000514442 DACH1Q9UI36 760 aa15.14■□□□□ 0.01
TCOF1-213ENST00000514442 RBM8AQ9Y5S9 174 aaKnown RBP15.14■□□□□ 0.01
TCOF1-213ENST00000514442 TMEM67Q5HYA8 995 aa15.14■□□□□ 0.01
TCOF1-213ENST00000514442 BRF1Q92994 677 aa15.14■□□□□ 0.01
TCOF1-213ENST00000514442 SMARCE1Q969G3 411 aa15.14■□□□□ 0.01
TCOF1-213ENST00000514442 MNAT1P51948 309 aa15.14■□□□□ 0.01
TCOF1-213ENST00000514442 TANGO6Q9C0B7 1094 aa15.14■□□□□ 0.01
TCOF1-213ENST00000514442 ZNF287Q9HBT7 754 aa15.14■□□□□ 0.01
TCOF1-213ENST00000514442 ARFGAP3Q9NP61 516 aa15.14■□□□□ 0.01
TCOF1-213ENST00000514442 ZNF76P36508 570 aa15.13■□□□□ 0.01
TCOF1-213ENST00000514442 STIM1Q13586 685 aa15.13■□□□□ 0.01
TCOF1-213ENST00000514442 RNF41Q9H4P4 317 aaPredicted RBP15.13■□□□□ 0.01
TCOF1-213ENST00000514442 SEC63Q9UGP8 760 aaKnown RBP15.13■□□□□ 0.01
TCOF1-213ENST00000514442 CHD1O14646 1710 aa15.13■□□□□ 0.01
TCOF1-213ENST00000514442 PCDH11XQ9BZA7 1347 aa15.13■□□□□ 0.01
TCOF1-213ENST00000514442 PCDH11YQ9BZA8 1340 aa15.13■□□□□ 0.01
TCOF1-213ENST00000514442 NMIQ13287 307 aaPredicted RBP15.13■□□□□ 0.01
TCOF1-213ENST00000514442 SRRTQ9BXP5 876 aaKnown RBP15.13■□□□□ 0.01
TCOF1-213ENST00000514442 ARHGAP29Q52LW3 1261 aa15.13■□□□□ 0.01
TCOF1-213ENST00000514442 CCDC91Q7Z6B0 441 aa15.13■□□□□ 0.01
TCOF1-213ENST00000514442 CCDC196A0A1B0GTZ2 297 aa15.13■□□□□ 0.01
TCOF1-213ENST00000514442 ANAPC15P60006 121 aa15.13■□□□□ 0.01
TCOF1-213ENST00000514442 SSRP1Q08945 709 aaKnown RBP15.13■□□□□ 0.01
TCOF1-213ENST00000514442 TFCP2Q12800 502 aa15.13■□□□□ 0.01
TCOF1-213ENST00000514442 ANKRD18AQ8IVF6 992 aa15.13■□□□□ 0.01
TCOF1-213ENST00000514442 PLEKHM2Q8IWE5 1019 aa15.13■□□□□ 0.01
TCOF1-213ENST00000514442 ZNF622Q969S3 477 aaKnown RBP eCLIP15.13■□□□□ 0.012e-6■■□□□ 12.3
TCOF1-213ENST00000514442 IL15P40933 162 aaPredicted RBP15.13■□□□□ 0.01
TCOF1-213ENST00000514442 TYRO3Q06418 890 aa15.13■□□□□ 0.01
TCOF1-213ENST00000514442 OTUD7AQ8TE49 926 aaPredicted RBP15.13■□□□□ 0.01
TCOF1-213ENST00000514442 SETDB2Q96T68 719 aa15.13■□□□□ 0.01
TCOF1-213ENST00000514442 RSPH14Q9UHP6 348 aa15.13■□□□□ 0.01
TCOF1-213ENST00000514442 CCDC96Q2M329 555 aa15.12■□□□□ 0.01
TCOF1-213ENST00000514442 ZNF790Q6PG37 636 aa15.12■□□□□ 0.01
TCOF1-213ENST00000514442 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.12■□□□□ 0.01
TCOF1-213ENST00000514442 PPFIBP1Q86W92 1011 aa15.12■□□□□ 0.01
TCOF1-213ENST00000514442 F13A1P00488 732 aa15.12■□□□□ 0.01
TCOF1-213ENST00000514442 ELF2Q15723 593 aa15.12■□□□□ 0.01
TCOF1-213ENST00000514442 ZFYVE27Q5T4F4 411 aa15.12■□□□□ 0.01
TCOF1-213ENST00000514442 MFSD6Q6ZSS7 791 aa15.12■□□□□ 0.01
TCOF1-213ENST00000514442 TMC6Q7Z403 805 aa15.12■□□□□ 0.01
TCOF1-213ENST00000514442 NCOA7Q8NI08 942 aa15.12■□□□□ 0.01
TCOF1-213ENST00000514442 CHL1O00533 1208 aa15.11■□□□□ 0.01
TCOF1-213ENST00000514442 UQCRFS1P1P0C7P4 283 aa15.11■□□□□ 0.01
TCOF1-213ENST00000514442 CEP131Q9UPN4 1083 aa15.11■□□□□ 0.01
TCOF1-213ENST00000514442 HMG20BQ9P0W2 317 aa15.11■□□□□ 0.01
TCOF1-213ENST00000514442 UTP14AQ9BVJ6 771 aaKnown RBP15.11■□□□□ 0.01
TCOF1-213ENST00000514442 DDX21Q9NR30 783 aaKnown RBP eCLIP15.11■□□□□ 0.01
TCOF1-213ENST00000514442 MAGI2Q86UL8 1455 aa15.11■□□□□ 0.01
TCOF1-213ENST00000514442 LMTK3Q96Q04 1460 aa15.11■□□□□ 0.01
TCOF1-213ENST00000514442 CAPN2P17655 700 aa15.11■□□□□ 0.01
TCOF1-213ENST00000514442 CATIPQ7Z7H3 387 aa15.11■□□□□ 0.01
TCOF1-213ENST00000514442 KLHDC4Q8TBB5 520 aa15.11■□□□□ 0.01
TCOF1-213ENST00000514442 ORC3Q9UBD5 711 aaPredicted RBP15.11■□□□□ 0.01
TCOF1-213ENST00000514442 SOS1Q07889 1333 aaPredicted RBP15.1■□□□□ 0.01
TCOF1-213ENST00000514442 IRS4O14654 1257 aaPredicted RBP15.1■□□□□ 0.01
TCOF1-213ENST00000514442 KDM5AP29375 1690 aaKnown RBP15.1■□□□□ 0.01
TCOF1-213ENST00000514442 METP08581 1390 aa15.1■□□□□ 0.01
TCOF1-213ENST00000514442 CYP7A1P22680 504 aa15.1■□□□□ 0.01
TCOF1-213ENST00000514442 ERCC6L2Q5T890 1561 aa15.1■□□□□ 0.01
TCOF1-213ENST00000514442 ZCCHC11Q5TAX3 1644 aaKnown RBP15.1■□□□□ 0.01
TCOF1-213ENST00000514442 TSPY2A6NKD2 308 aa15.1■□□□□ 0.01
TCOF1-213ENST00000514442 METAP2P50579 478 aaKnown RBP eCLIP15.1■□□□□ 0.01
TCOF1-213ENST00000514442 SLC9C2Q5TAH2 1124 aa15.1■□□□□ 0.01
TCOF1-213ENST00000514442 CENPHQ9H3R5 247 aa15.1■□□□□ 0.01
TCOF1-213ENST00000514442 IARSP41252 1262 aaKnown RBP15.1■□□□□ 0.01
TCOF1-213ENST00000514442 SYCP1Q15431 976 aa15.1■□□□□ 0.01
TCOF1-213ENST00000514442 CFAP100Q494V2 611 aa15.1■□□□□ 0.01
TCOF1-213ENST00000514442 MCMDC2Q4G0Z9 681 aa15.1■□□□□ 0.01
TCOF1-213ENST00000514442 KLHL10Q6JEL2 608 aa15.1■□□□□ 0.01
TCOF1-213ENST00000514442 PAG1Q9NWQ8 432 aa15.1■□□□□ 0.01
TCOF1-213ENST00000514442 KLF18A0A0U1RQI7 1052 aa15.09■□□□□ 0.01
TCOF1-213ENST00000514442 PLEKHG3A1L390 1219 aa15.09■□□□□ 0.01
TCOF1-213ENST00000514442 NLRP5P59047 1200 aa15.09■□□□□ 0.01
TCOF1-213ENST00000514442 SMARCC1Q92922 1105 aaPredicted RBP15.09■□□□□ 0.01
TCOF1-213ENST00000514442 PDLIM2Q96JY6 352 aa15.09■□□□□ 0.01
TCOF1-213ENST00000514442 VAT1LQ9HCJ6 419 aa15.09■□□□□ 0.01
TCOF1-213ENST00000514442 GOLGA6L9A6NEM1 432 aa15.09■□□□□ 0.01
TCOF1-213ENST00000514442 ZSCAN20P17040 1043 aaPredicted RBP15.09■□□□□ 0.01
TCOF1-213ENST00000514442 NLRP3Q96P20 1036 aa15.09■□□□□ 0.01
TCOF1-213ENST00000514442 CRACR2AQ9BSW2 395 aa15.09■□□□□ 0.01
TCOF1-213ENST00000514442 SLC26A6Q9BXS9 759 aa15.09■□□□□ 0.01
TCOF1-213ENST00000514442 DNAI1Q9UI46 699 aa15.09■□□□□ 0.01
TCOF1-213ENST00000514442 ST5P78524 1137 aa15.09■□□□□ 0.01
TCOF1-213ENST00000514442 TRMT2AQ8IZ69 625 aaKnown RBP15.09■□□□□ 0.01
TCOF1-213ENST00000514442 FSIP1Q8NA03 581 aa15.09■□□□□ 0.01
TCOF1-213ENST00000514442 FAM89AQ96GI7 184 aa15.09■□□□□ 0.01
TCOF1-213ENST00000514442 LUZP1Q86V48 1076 aa15.08■□□□□ 0.01
TCOF1-213ENST00000514442 TMX1Q9H3N1 280 aa15.08■□□□□ 0.01
TCOF1-213ENST00000514442 SLC4A4Q9Y6R1 1079 aa15.08■□□□□ 0.01
TCOF1-213ENST00000514442 F8W031 263 aaPredicted RBP15.08■□□□□ 0
TCOF1-213ENST00000514442 MAP9Q49MG5 647 aa15.08■□□□□ 0
TCOF1-213ENST00000514442 ODF2Q5BJF6 829 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms