RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 ANKRD44Q8N8A2 993 aa12.29□□□□□ -0.44
RNF4-221ENST00000513643 TAF1DQ9H5J8 278 aaPredicted RBP12.29□□□□□ -0.44
RNF4-221ENST00000513643 C9orf78Q9NZ63 289 aaPredicted RBP12.29□□□□□ -0.44
RNF4-221ENST00000513643 XDHP47989 1333 aa12.29□□□□□ -0.44
RNF4-221ENST00000513643 IRS2Q9Y4H2 1338 aa12.29□□□□□ -0.44
RNF4-221ENST00000513643 ATP2B4P23634 1241 aa12.28□□□□□ -0.44
RNF4-221ENST00000513643 EIF6P56537 245 aaKnown RBP12.28□□□□□ -0.44
RNF4-221ENST00000513643 API5Q9BZZ5 524 aaKnown RBP12.28□□□□□ -0.44
RNF4-221ENST00000513643 MYH3P11055 1940 aa12.28□□□□□ -0.44
RNF4-221ENST00000513643 IQCA1LA6NCM1 817 aa12.27□□□□□ -0.45
RNF4-221ENST00000513643 BCAR3O75815 825 aa12.27□□□□□ -0.45
RNF4-221ENST00000513643 HSPA6P17066 643 aa12.27□□□□□ -0.45
RNF4-221ENST00000513643 CCT4P50991 539 aaKnown RBP12.27□□□□□ -0.45
RNF4-221ENST00000513643 INTS3Q68E01 1043 aaKnown RBP12.27□□□□□ -0.45
RNF4-221ENST00000513643 EYA3Q99504 573 aa12.27□□□□□ -0.45
RNF4-221ENST00000513643 GGA1Q9UJY5 639 aa12.27□□□□□ -0.45
RNF4-221ENST00000513643 SCN4AP35499 1836 aa12.26□□□□□ -0.45
RNF4-221ENST00000513643 ANKRD18BA2A2Z9 1011 aa12.26□□□□□ -0.45
RNF4-221ENST00000513643 C6orf229H3BNL8 230 aa12.26□□□□□ -0.45
RNF4-221ENST00000513643 POTEIP0CG38 1075 aa12.26□□□□□ -0.45
RNF4-221ENST00000513643 POTEJP0CG39 1038 aa12.26□□□□□ -0.45
RNF4-221ENST00000513643 IGHMBP2P38935 993 aaKnown RBP12.26□□□□□ -0.45
RNF4-221ENST00000513643 IFIT5Q13325 482 aaKnown RBP12.26□□□□□ -0.45
RNF4-221ENST00000513643 C15orf52Q6ZUT6 534 aaKnown RBP12.26□□□□□ -0.45
RNF4-221ENST00000513643 GPR101Q96P66 508 aaPredicted RBP12.26□□□□□ -0.45
RNF4-221ENST00000513643 ZC3H12CQ9C0D7 883 aaKnown RBP12.26□□□□□ -0.45
RNF4-221ENST00000513643 BICC1Q9H694 974 aaKnown RBP12.26□□□□□ -0.45
RNF4-221ENST00000513643 ANKIB1Q9P2G1 1089 aa12.26□□□□□ -0.45
RNF4-221ENST00000513643 HACL1Q9UJ83 578 aa12.26□□□□□ -0.45
RNF4-221ENST00000513643 LEMD3Q9Y2U8 911 aa12.26□□□□□ -0.45
RNF4-221ENST00000513643 KIF16BQ96L93 1317 aa12.26□□□□□ -0.45
RNF4-221ENST00000513643 UFL1O94874 794 aa12.25□□□□□ -0.45
RNF4-221ENST00000513643 VIL1P09327 827 aaKnown RBP12.25□□□□□ -0.45
RNF4-221ENST00000513643 TRIM27P14373 513 aa12.25□□□□□ -0.45
RNF4-221ENST00000513643 EPS15P42566 896 aa12.25□□□□□ -0.45
RNF4-221ENST00000513643 CHRNDQ07001 517 aa12.25□□□□□ -0.45
RNF4-221ENST00000513643 CIAPIN1Q6FI81 312 aa12.25□□□□□ -0.45
RNF4-221ENST00000513643 SMC1BQ8NDV3 1235 aa12.25□□□□□ -0.45
RNF4-221ENST00000513643 ANKRD2Q9GZV1 360 aa12.25□□□□□ -0.45
RNF4-221ENST00000513643 KCNQ5Q9NR82 932 aa12.25□□□□□ -0.45
RNF4-221ENST00000513643 GPRC5DQ9NZD1 345 aa12.25□□□□□ -0.45
RNF4-221ENST00000513643 MED23Q9ULK4 1368 aa12.25□□□□□ -0.45
RNF4-221ENST00000513643 ZNF609O15014 1411 aa12.25□□□□□ -0.45
RNF4-221ENST00000513643 RIMBP2O15034 1052 aa12.24□□□□□ -0.45
RNF4-221ENST00000513643 ECE2O60344 883 aa12.24□□□□□ -0.45
RNF4-221ENST00000513643 RAD17O75943 681 aa12.24□□□□□ -0.45
RNF4-221ENST00000513643 PCNTO95613 3336 aa12.24□□□□□ -0.45
RNF4-221ENST00000513643 EPHX2P34913 555 aa12.24□□□□□ -0.45
RNF4-221ENST00000513643 RFX5P48382 616 aaPredicted RBP12.24□□□□□ -0.45
RNF4-221ENST00000513643 TNIP1Q15025 636 aa12.24□□□□□ -0.45
RNF4-221ENST00000513643 ATF7IPQ6VMQ6 1270 aa12.24□□□□□ -0.45
RNF4-221ENST00000513643 PODNQ7Z5L7 613 aa12.24□□□□□ -0.45
RNF4-221ENST00000513643 PNMA8AQ86V59 439 aaPredicted RBP12.24□□□□□ -0.45
RNF4-221ENST00000513643 TXNRD3Q86VQ6 643 aa12.24□□□□□ -0.45
RNF4-221ENST00000513643 C16orf71Q8IYS4 520 aaPredicted RBP12.24□□□□□ -0.45
RNF4-221ENST00000513643 ADAMTSL1Q8N6G6 1762 aa12.24□□□□□ -0.45
RNF4-221ENST00000513643 DPF2Q92785 391 aa12.24□□□□□ -0.45
RNF4-221ENST00000513643 MPHOSPH8Q99549 860 aa12.24□□□□□ -0.45
RNF4-221ENST00000513643 DBNDD1Q9H9R9 158 aa12.24□□□□□ -0.45
RNF4-221ENST00000513643 PGAP2Q9UHJ9 254 aa12.24□□□□□ -0.45
RNF4-221ENST00000513643 RIPOR2Q9Y4F9 1068 aa12.24□□□□□ -0.45
RNF4-221ENST00000513643 ZNF804BA4D1E1 1349 aa12.23□□□□□ -0.45
RNF4-221ENST00000513643 PSMD14O00487 310 aa12.23□□□□□ -0.45
RNF4-221ENST00000513643 IPO8O15397 1037 aaKnown RBP12.23□□□□□ -0.45
RNF4-221ENST00000513643 ITGBL1O95965 494 aaPredicted RBP12.23□□□□□ -0.45
RNF4-221ENST00000513643 GMPSP49915 693 aaPredicted RBP12.23□□□□□ -0.45
RNF4-221ENST00000513643 DOK7Q18PE1 504 aa12.23□□□□□ -0.45
RNF4-221ENST00000513643 CCDC57Q2TAC2 916 aa12.23□□□□□ -0.45
RNF4-221ENST00000513643 CHADLQ6NUI6 762 aa12.23□□□□□ -0.45
RNF4-221ENST00000513643 LDHDQ86WU2 507 aa12.23□□□□□ -0.45
RNF4-221ENST00000513643 ZNF594Q96JF6 807 aaPredicted RBP12.23□□□□□ -0.45
RNF4-221ENST00000513643 GMLQ99445 158 aa12.23□□□□□ -0.45
RNF4-221ENST00000513643 TNNQ9UQP3 1299 aa12.23□□□□□ -0.45
RNF4-221ENST00000513643 GJA3Q9Y6H8 435 aa12.23□□□□□ -0.45
RNF4-221ENST00000513643 PASKQ96RG2 1323 aa12.22□□□□□ -0.45
RNF4-221ENST00000513643 RPS12P25398 132 aaKnown RBP12.22□□□□□ -0.45
RNF4-221ENST00000513643 KLRK1P26718 216 aa12.22□□□□□ -0.45
RNF4-221ENST00000513643 LDHAL6AQ6ZMR3 332 aa12.22□□□□□ -0.45
RNF4-221ENST00000513643 USP50Q70EL3 339 aaPredicted RBP12.22□□□□□ -0.45
RNF4-221ENST00000513643 DNAJC5GQ8N7S2 189 aa12.22□□□□□ -0.45
RNF4-221ENST00000513643 PUS3Q9BZE2 481 aaKnown RBP12.22□□□□□ -0.45
RNF4-221ENST00000513643 SCN9AQ15858 1988 aa12.21□□□□□ -0.45
RNF4-221ENST00000513643 SNAP23O00161 211 aa12.21□□□□□ -0.45
RNF4-221ENST00000513643 HIRAP54198 1017 aaPredicted RBP12.21□□□□□ -0.45
RNF4-221ENST00000513643 VGLL2Q8N8G2 317 aa12.21□□□□□ -0.45
RNF4-221ENST00000513643 MEIS3Q99687 375 aa12.21□□□□□ -0.45
RNF4-221ENST00000513643 COA1Q9GZY4 146 aa12.21□□□□□ -0.45
RNF4-221ENST00000513643 ADARB2Q9NS39 739 aaKnown RBP12.21□□□□□ -0.45
RNF4-221ENST00000513643 ZBTB12Q9Y330 459 aaPredicted RBP12.21□□□□□ -0.45
RNF4-221ENST00000513643 SHTN1A0MZ66 631 aa12.2□□□□□ -0.46
RNF4-221ENST00000513643 TAF5LO75529 589 aa12.2□□□□□ -0.46
RNF4-221ENST00000513643 APLP1P51693 650 aa12.2□□□□□ -0.46
RNF4-221ENST00000513643 PTPN12Q05209 780 aaKnown RBP12.2□□□□□ -0.46
RNF4-221ENST00000513643 MTX1Q13505 466 aa12.2□□□□□ -0.46
RNF4-221ENST00000513643 ZKSCAN2Q63HK3 967 aa12.2□□□□□ -0.46
RNF4-221ENST00000513643 AGBL3Q8NEM8 1001 aa12.2□□□□□ -0.46
RNF4-221ENST00000513643 HELBQ8NG08 1087 aaPredicted RBP12.2□□□□□ -0.46
RNF4-221ENST00000513643 CNOT7Q9UIV1 285 aaKnown RBP12.2□□□□□ -0.46
RNF4-221ENST00000513643 CHMP3Q9Y3E7 222 aa12.2□□□□□ -0.46
RNF4-221ENST00000513643 UBTFL1P0CB47 393 aaPredicted RBP12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms