RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 TTLL11Q8NHH1 800 aa10.5□□□□□ -0.73
LIMCH1-209ENST00000509277 BOLA2Q9H3K6 86 aa10.5□□□□□ -0.73
LIMCH1-209ENST00000509277 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.49□□□□□ -0.73
LIMCH1-209ENST00000509277 ADAMTS7Q9UKP4 1686 aa10.49□□□□□ -0.73
LIMCH1-209ENST00000509277 NTSR2O95665 410 aa10.49□□□□□ -0.73
LIMCH1-209ENST00000509277 SSH3Q8TE77 659 aa10.49□□□□□ -0.73
LIMCH1-209ENST00000509277 KIF1BPQ96EK5 621 aa10.49□□□□□ -0.73
LIMCH1-209ENST00000509277 GPR101Q96P66 508 aaPredicted RBP10.49□□□□□ -0.73
LIMCH1-209ENST00000509277 TBC1D2Q9BYX2 928 aa10.49□□□□□ -0.73
LIMCH1-209ENST00000509277 NYXQ9GZU5 481 aa10.49□□□□□ -0.73
LIMCH1-209ENST00000509277 TLR7Q9NYK1 1049 aaKnown RBP10.49□□□□□ -0.73
LIMCH1-209ENST00000509277 ANKIB1Q9P2G1 1089 aa10.49□□□□□ -0.73
LIMCH1-209ENST00000509277 NUCB1Q02818 461 aa10.49□□□□□ -0.73
LIMCH1-209ENST00000509277 PAXIP1Q6ZW49 1069 aaPredicted RBP10.49□□□□□ -0.73
LIMCH1-209ENST00000509277 SMC5Q8IY18 1101 aa10.49□□□□□ -0.73
LIMCH1-209ENST00000509277 PNPLA7Q6ZV29 1317 aa10.49□□□□□ -0.73
LIMCH1-209ENST00000509277 ADRA2BP18089 450 aa10.48□□□□□ -0.73
LIMCH1-209ENST00000509277 PTPN12Q05209 780 aaKnown RBP10.48□□□□□ -0.73
LIMCH1-209ENST00000509277 DDR1Q08345 913 aa10.48□□□□□ -0.73
LIMCH1-209ENST00000509277 CLEC4GQ6UXB4 293 aa10.48□□□□□ -0.73
LIMCH1-209ENST00000509277 ANKRD18AQ8IVF6 992 aa10.48□□□□□ -0.73
LIMCH1-209ENST00000509277 CACNA1FO60840 1977 aa10.48□□□□□ -0.73
LIMCH1-209ENST00000509277 HSP90AB4PQ58FF6 505 aa10.48□□□□□ -0.73
LIMCH1-209ENST00000509277 PRR5LQ6MZQ0 368 aa10.48□□□□□ -0.73
LIMCH1-209ENST00000509277 VPS37DQ86XT2 251 aa10.48□□□□□ -0.73
LIMCH1-209ENST00000509277 NLGN1Q8N2Q7 840 aa10.48□□□□□ -0.73
LIMCH1-209ENST00000509277 CELF1Q92879 486 aaKnown RBP10.48□□□□□ -0.73
LIMCH1-209ENST00000509277 ATP10DQ9P241 1426 aa10.48□□□□□ -0.73
LIMCH1-209ENST00000509277 DDX49Q9Y6V7 483 aaKnown RBP10.48□□□□□ -0.73
LIMCH1-209ENST00000509277 WTIPA6NIX2 430 aaPredicted RBP10.48□□□□□ -0.73
LIMCH1-209ENST00000509277 SPDYE4A6NLX3 237 aa10.48□□□□□ -0.73
LIMCH1-209ENST00000509277 CHRNA5P30532 468 aa10.48□□□□□ -0.73
LIMCH1-209ENST00000509277 FKBP4Q02790 459 aaKnown RBP eCLIP10.48□□□□□ -0.73
LIMCH1-209ENST00000509277 UPF1Q92900 1129 aaKnown RBP eCLIP10.48□□□□□ -0.73
LIMCH1-209ENST00000509277 TRERF1Q96PN7 1200 aa10.48□□□□□ -0.73
LIMCH1-209ENST00000509277 NSFL1CQ9UNZ2 370 aaKnown RBP10.48□□□□□ -0.73
LIMCH1-209ENST00000509277 ABCC12Q96J65 1359 aa10.47□□□□□ -0.73
LIMCH1-209ENST00000509277 NASPP49321 788 aaPredicted RBP10.47□□□□□ -0.73
LIMCH1-209ENST00000509277 OLFM4Q6UX06 510 aa10.47□□□□□ -0.73
LIMCH1-209ENST00000509277 EDC3Q96F86 508 aaKnown RBP10.47□□□□□ -0.73
LIMCH1-209ENST00000509277 DBNDD2Q9BQY9 259 aa10.47□□□□□ -0.73
LIMCH1-209ENST00000509277 AFDNP55196 1824 aaKnown RBP10.47□□□□□ -0.73
LIMCH1-209ENST00000509277 G3V3G9 751 aa10.46□□□□□ -0.73
LIMCH1-209ENST00000509277 SASH1O94885 1247 aa10.46□□□□□ -0.73
LIMCH1-209ENST00000509277 MX1P20591 662 aa10.46□□□□□ -0.73
LIMCH1-209ENST00000509277 CASP7P55210 303 aa10.46□□□□□ -0.73
LIMCH1-209ENST00000509277 DCAF8Q5TAQ9 597 aa10.46□□□□□ -0.73
LIMCH1-209ENST00000509277 SBF2Q86WG5 1849 aa10.46□□□□□ -0.73
LIMCH1-209ENST00000509277 C6orf229H3BNL8 230 aa10.46□□□□□ -0.73
LIMCH1-209ENST00000509277 EYA2O00167 538 aa10.46□□□□□ -0.73
LIMCH1-209ENST00000509277 TPM2P07951 284 aa10.46□□□□□ -0.73
LIMCH1-209ENST00000509277 AKT1S1Q96B36 256 aa10.46□□□□□ -0.73
LIMCH1-209ENST00000509277 EAF2Q96CJ1 260 aaPredicted RBP10.46□□□□□ -0.73
LIMCH1-209ENST00000509277 NHSQ6T4R5 1651 aa10.46□□□□□ -0.74
LIMCH1-209ENST00000509277 UBR2Q8IWV8 1755 aa10.46□□□□□ -0.74
LIMCH1-209ENST00000509277 RIMBP2O15034 1052 aa10.46□□□□□ -0.74
LIMCH1-209ENST00000509277 CDC5LQ99459 802 aaKnown RBP10.46□□□□□ -0.74
LIMCH1-209ENST00000509277 TMX4Q9H1E5 349 aaPredicted RBP10.46□□□□□ -0.74
LIMCH1-209ENST00000509277 TJP1Q07157 1748 aa10.45□□□□□ -0.74
LIMCH1-209ENST00000509277 CHAF1AQ13111 956 aaPredicted RBP10.45□□□□□ -0.74
LIMCH1-209ENST00000509277 TRIM28Q13263 835 aaKnown RBP10.45□□□□□ -0.74
LIMCH1-209ENST00000509277 ADORA1P30542 326 aa10.45□□□□□ -0.74
LIMCH1-209ENST00000509277 FLAD1Q8NFF5 587 aa10.45□□□□□ -0.74
LIMCH1-209ENST00000509277 GPATCH3Q96I76 525 aa10.45□□□□□ -0.74
LIMCH1-209ENST00000509277 CARMIL3Q8ND23 1372 aa10.45□□□□□ -0.74
LIMCH1-209ENST00000509277 A0A1B0GUL7 405 aa10.45□□□□□ -0.74
LIMCH1-209ENST00000509277 ZBTB22O15209 634 aa10.45□□□□□ -0.74
LIMCH1-209ENST00000509277 HSP90B1P14625 803 aaKnown RBP10.45□□□□□ -0.74
LIMCH1-209ENST00000509277 ATP2B3Q16720 1220 aa10.45□□□□□ -0.74
LIMCH1-209ENST00000509277 TTC39AQ5SRH9 613 aa10.45□□□□□ -0.74
LIMCH1-209ENST00000509277 ERC1Q8IUD2 1116 aa10.45□□□□□ -0.74
LIMCH1-209ENST00000509277 CGNQ9P2M7 1197 aaKnown RBP10.45□□□□□ -0.74
LIMCH1-209ENST00000509277 POLA2Q14181 598 aa10.44□□□□□ -0.74
LIMCH1-209ENST00000509277 PLEKHM2Q8IWE5 1019 aa10.44□□□□□ -0.74
LIMCH1-209ENST00000509277 LAMB4A4D0S4 1761 aa10.44□□□□□ -0.74
LIMCH1-209ENST00000509277 ARFGEF2Q9Y6D5 1785 aa10.44□□□□□ -0.74
LIMCH1-209ENST00000509277 A0A0G2JLW4 131 aa10.44□□□□□ -0.74
LIMCH1-209ENST00000509277 PDIA4P13667 645 aaKnown RBP10.44□□□□□ -0.74
LIMCH1-209ENST00000509277 RPS8P62241 208 aaKnown RBP10.44□□□□□ -0.74
LIMCH1-209ENST00000509277 PI16Q6UXB8 463 aa10.44□□□□□ -0.74
LIMCH1-209ENST00000509277 C2CD5Q86YS7 1000 aa10.44□□□□□ -0.74
LIMCH1-209ENST00000509277 NAP1L2Q9ULW6 460 aaPredicted RBP10.44□□□□□ -0.74
LIMCH1-209ENST00000509277 C4BP0C0L5 1744 aa10.44□□□□□ -0.74
LIMCH1-209ENST00000509277 RAB11FIP3O75154 756 aa10.43□□□□□ -0.74
LIMCH1-209ENST00000509277 POLD1P28340 1107 aa10.43□□□□□ -0.74
LIMCH1-209ENST00000509277 PDE1AP54750 535 aa10.43□□□□□ -0.74
LIMCH1-209ENST00000509277 GAS2L3Q86XJ1 694 aa10.43□□□□□ -0.74
LIMCH1-209ENST00000509277 PXDNLA1KZ92 1463 aa10.43□□□□□ -0.74
LIMCH1-209ENST00000509277 GOLGA6L22H0YM25 854 aa10.43□□□□□ -0.74
LIMCH1-209ENST00000509277 POLRMTO00411 1230 aaKnown RBP10.43□□□□□ -0.74
LIMCH1-209ENST00000509277 IL15P40933 162 aaPredicted RBP10.43□□□□□ -0.74
LIMCH1-209ENST00000509277 TNNI3KQ59H18 835 aa10.43□□□□□ -0.74
LIMCH1-209ENST00000509277 ABCF2Q9UG63 623 aa10.43□□□□□ -0.74
LIMCH1-209ENST00000509277 FPGT-TNNI3KV9GXZ4 949 aa10.43□□□□□ -0.74
LIMCH1-209ENST00000509277 PAPPAQ13219 1627 aa10.43□□□□□ -0.74
LIMCH1-209ENST00000509277 IBTKQ9P2D0 1353 aaPredicted RBP10.43□□□□□ -0.74
LIMCH1-209ENST00000509277 NUP98P52948 1817 aa10.43□□□□□ -0.74
LIMCH1-209ENST00000509277 CHRNDQ07001 517 aa10.43□□□□□ -0.74
LIMCH1-209ENST00000509277 ZNF771Q7L3S4 317 aaPredicted RBP10.43□□□□□ -0.74
LIMCH1-209ENST00000509277 FSD1Q9BTV5 496 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms