RNA–Protein interactions for RNA: ENST00000504761.6

TCOF1-207, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 4,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-207ENST00000504761 ANO8Q9HCE9 1232 aaPredicted RBP16.49■□□□□ 0.23
TCOF1-207ENST00000504761 STX8Q9UNK0 236 aa16.49■□□□□ 0.23
TCOF1-207ENST00000504761 LRRC24Q50LG9 513 aa16.49■□□□□ 0.23
TCOF1-207ENST00000504761 IL27Q8NEV9 243 aa16.49■□□□□ 0.23
TCOF1-207ENST00000504761 ANKRD20A12PQ8NF67 263 aa16.49■□□□□ 0.23
TCOF1-207ENST00000504761 RIMBP2O15034 1052 aa16.48■□□□□ 0.23
TCOF1-207ENST00000504761 SGSM2O43147 1006 aa16.48■□□□□ 0.23
TCOF1-207ENST00000504761 PIGBQ92521 554 aa16.48■□□□□ 0.23
TCOF1-207ENST00000504761 TPM1P09493 284 aa16.48■□□□□ 0.23
TCOF1-207ENST00000504761 PARP10Q53GL7 1025 aa16.48■□□□□ 0.23
TCOF1-207ENST00000504761 CCDC43Q96MW1 224 aaKnown RBP16.48■□□□□ 0.23
TCOF1-207ENST00000504761 TMOD2Q9NZR1 351 aa16.48■□□□□ 0.23
TCOF1-207ENST00000504761 SMC2O95347 1197 aa16.48■□□□□ 0.23
TCOF1-207ENST00000504761 IARSP41252 1262 aaKnown RBP16.48■□□□□ 0.23
TCOF1-207ENST00000504761 METAP2P50579 478 aaKnown RBP eCLIP16.48■□□□□ 0.23
TCOF1-207ENST00000504761 CKAP2LQ8IYA6 745 aa16.48■□□□□ 0.23
TCOF1-207ENST00000504761 CNBD1Q8NA66 436 aa16.48■□□□□ 0.23
TCOF1-207ENST00000504761 CCDC196A0A1B0GTZ2 297 aa16.47■□□□□ 0.23
TCOF1-207ENST00000504761 FRMPD1Q5SYB0 1578 aa16.47■□□□□ 0.23
TCOF1-207ENST00000504761 HMGB2P26583 209 aaKnown RBP16.47■□□□□ 0.23
TCOF1-207ENST00000504761 RBM25P49756 843 aaKnown RBP16.47■□□□□ 0.23
TCOF1-207ENST00000504761 SCAND2PQ9GZW5 306 aaPredicted RBP16.47■□□□□ 0.23
TCOF1-207ENST00000504761 BAG3O95817 575 aa16.47■□□□□ 0.23
TCOF1-207ENST00000504761 RXRAP19793 462 aa16.47■□□□□ 0.23
TCOF1-207ENST00000504761 PDILTQ8N807 584 aa16.47■□□□□ 0.23
TCOF1-207ENST00000504761 VAT1LQ9HCJ6 419 aa16.47■□□□□ 0.23
TCOF1-207ENST00000504761 PTPRUQ92729 1446 aa16.47■□□□□ 0.23
TCOF1-207ENST00000504761 LDHCP07864 332 aa16.47■□□□□ 0.23
TCOF1-207ENST00000504761 TXLNAP40222 546 aa16.47■□□□□ 0.23
TCOF1-207ENST00000504761 APOBRQ0VD83 1088 aa16.47■□□□□ 0.23
TCOF1-207ENST00000504761 UNC5CLQ8IV45 518 aa16.47■□□□□ 0.23
TCOF1-207ENST00000504761 WASF1Q92558 559 aa16.47■□□□□ 0.23
TCOF1-207ENST00000504761 SLC26A6Q9BXS9 759 aa16.47■□□□□ 0.23
TCOF1-207ENST00000504761 CPS1P31327 1500 aa16.46■□□□□ 0.23
TCOF1-207ENST00000504761 PDE4CQ08493 712 aa16.46■□□□□ 0.23
TCOF1-207ENST00000504761 CCAR2Q8N163 923 aaKnown RBP16.46■□□□□ 0.23
TCOF1-207ENST00000504761 PUS3Q9BZE2 481 aaKnown RBP16.46■□□□□ 0.23
TCOF1-207ENST00000504761 NOL7Q9UMY1 257 aaKnown RBP16.46■□□□□ 0.23
TCOF1-207ENST00000504761 PRC1O43663 620 aa16.46■□□□□ 0.23
TCOF1-207ENST00000504761 CATIPQ7Z7H3 387 aa16.46■□□□□ 0.23
TCOF1-207ENST00000504761 CDK5RAP3Q96JB5 506 aa16.46■□□□□ 0.23
TCOF1-207ENST00000504761 ZNF287Q9HBT7 754 aa16.46■□□□□ 0.23
TCOF1-207ENST00000504761 TPM2P07951 284 aa16.45■□□□□ 0.22
TCOF1-207ENST00000504761 ZAP70P43403 619 aa16.45■□□□□ 0.22
TCOF1-207ENST00000504761 CRNKL1Q9BZJ0 848 aaKnown RBP16.45■□□□□ 0.22
TCOF1-207ENST00000504761 PANK2Q9BZ23 570 aa16.45■□□□□ 0.22
TCOF1-207ENST00000504761 MBD4O95243 580 aa16.45■□□□□ 0.22
TCOF1-207ENST00000504761 SSRP1Q08945 709 aaKnown RBP16.45■□□□□ 0.22
TCOF1-207ENST00000504761 SPTY2D1Q68D10 685 aaPredicted RBP16.45■□□□□ 0.22
TCOF1-207ENST00000504761 HOMER1Q86YM7 354 aa16.45■□□□□ 0.22
TCOF1-207ENST00000504761 ZC3H12CQ9C0D7 883 aaKnown RBP16.45■□□□□ 0.22
TCOF1-207ENST00000504761 SEC62Q99442 399 aaKnown RBP16.44■□□□□ 0.22
TCOF1-207ENST00000504761 FAM13BQ9NYF5 915 aa16.44■□□□□ 0.22
TCOF1-207ENST00000504761 TLR7Q9NYK1 1049 aaKnown RBP16.44■□□□□ 0.22
TCOF1-207ENST00000504761 PUM3Q15397 648 aaKnown RBP16.44■□□□□ 0.22
TCOF1-207ENST00000504761 MAP3K11Q16584 847 aa16.44■□□□□ 0.22
TCOF1-207ENST00000504761 KBTBD3Q8NAB2 608 aa16.44■□□□□ 0.22
TCOF1-207ENST00000504761 CNPY2Q9Y2B0 182 aa16.44■□□□□ 0.22
TCOF1-207ENST00000504761 ADGRB1O14514 1584 aa16.44■□□□□ 0.22
TCOF1-207ENST00000504761 ZSCAN22P10073 491 aaPredicted RBP16.44■□□□□ 0.22
TCOF1-207ENST00000504761 CRKLP46109 303 aaKnown RBP16.44■□□□□ 0.22
TCOF1-207ENST00000504761 PICALMQ13492 652 aa16.44■□□□□ 0.22
TCOF1-207ENST00000504761 WTAPQ15007 396 aa16.44■□□□□ 0.22
TCOF1-207ENST00000504761 FAM43AQ8N2R8 423 aa16.44■□□□□ 0.22
TCOF1-207ENST00000504761 ZKSCAN3Q9BRR0 538 aa16.44■□□□□ 0.22
TCOF1-207ENST00000504761 PDE4BQ07343 736 aa16.43■□□□□ 0.22
TCOF1-207ENST00000504761 SNX14Q9Y5W7 946 aa16.43■□□□□ 0.22
TCOF1-207ENST00000504761 IBTKQ9P2D0 1353 aaPredicted RBP16.43■□□□□ 0.22
TCOF1-207ENST00000504761 ZBTB43O43298 467 aa16.43■□□□□ 0.22
TCOF1-207ENST00000504761 SSBP05455 408 aaKnown RBP eCLIP16.43■□□□□ 0.22
TCOF1-207ENST00000504761 ZHX3Q9H4I2 956 aa16.43■□□□□ 0.22
TCOF1-207ENST00000504761 MAGEB6P1A0A0J9YX57 407 aa16.43■□□□□ 0.22
TCOF1-207ENST00000504761 CCDC96Q2M329 555 aa16.43■□□□□ 0.22
TCOF1-207ENST00000504761 USP31Q70CQ4 1352 aa16.43■□□□□ 0.22
TCOF1-207ENST00000504761 LRRC7Q96NW7 1537 aa16.43■□□□□ 0.22
TCOF1-207ENST00000504761 RUFY3Q7L099 469 aa16.43■□□□□ 0.22
TCOF1-207ENST00000504761 GREM2Q9H772 168 aa16.43■□□□□ 0.22
TCOF1-207ENST00000504761 PDIA4P13667 645 aaKnown RBP16.42■□□□□ 0.22
TCOF1-207ENST00000504761 SLC27A2O14975 620 aa16.42■□□□□ 0.22
TCOF1-207ENST00000504761 DNM1Q05193 864 aaKnown RBP16.42■□□□□ 0.22
TCOF1-207ENST00000504761 ZBTB38Q8NAP3 1195 aaPredicted RBP16.42■□□□□ 0.22
TCOF1-207ENST00000504761 NOC3LQ8WTT2 800 aaKnown RBP16.42■□□□□ 0.22
TCOF1-207ENST00000504761 PALD1Q9ULE6 856 aa16.42■□□□□ 0.22
TCOF1-207ENST00000504761 C1orf167Q5SNV9 1468 aa16.42■□□□□ 0.22
TCOF1-207ENST00000504761 NRXN1Q9ULB1 1477 aa16.42■□□□□ 0.22
TCOF1-207ENST00000504761 CTSWP56202 376 aa16.42■□□□□ 0.22
TCOF1-207ENST00000504761 SLF2Q8IX21 1173 aa16.42■□□□□ 0.22
TCOF1-207ENST00000504761 MCM9Q9NXL9 1143 aa16.42■□□□□ 0.22
TCOF1-207ENST00000504761 DHX32Q7L7V1 743 aaKnown RBP16.41■□□□□ 0.22
TCOF1-207ENST00000504761 ARMT1Q9H993 441 aa16.41■□□□□ 0.22
TCOF1-207ENST00000504761 MAP3K15Q6ZN16 1313 aa16.41■□□□□ 0.22
TCOF1-207ENST00000504761 DHX8Q14562 1220 aaKnown RBP16.41■□□□□ 0.22
TCOF1-207ENST00000504761 GIGYF2Q6Y7W6 1299 aaKnown RBP16.41■□□□□ 0.22
TCOF1-207ENST00000504761 A0A0D9SFI3 127 aa16.41■□□□□ 0.22
TCOF1-207ENST00000504761 GPAA1O43292 621 aa16.41■□□□□ 0.22
TCOF1-207ENST00000504761 NLRP5P59047 1200 aa16.41■□□□□ 0.22
TCOF1-207ENST00000504761 ESR2Q92731 530 aa16.41■□□□□ 0.22
TCOF1-207ENST00000504761 CDC42BPGQ6DT37 1551 aa16.41■□□□□ 0.22
TCOF1-207ENST00000504761 SEC63Q9UGP8 760 aaKnown RBP16.41■□□□□ 0.22
TCOF1-207ENST00000504761 PARP3Q9Y6F1 533 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms