RNA–Protein interactions for RNA: ENST00000493919.5

BRCA1-222, Transcript of BRCA1, DNA repair associated, human

TSL 2

Gene BRCA1, Length 1,948 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRCA1-222	ENST00000493919	TNRC6C	Q9HCJ0	1690 aa	Known RBP	14.01	□□□□□ -0.17
BRCA1-222	ENST00000493919		F6X3S4	739 aa		14.01	□□□□□ -0.17
BRCA1-222	ENST00000493919	NTSR2	O95665	410 aa		14.01	□□□□□ -0.17
BRCA1-222	ENST00000493919	RBM25	P49756	843 aa	Known RBP	14.01	□□□□□ -0.17
BRCA1-222	ENST00000493919	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	14.01	□□□□□ -0.17
BRCA1-222	ENST00000493919	METTL22	Q9BUU2	404 aa	Predicted RBP	14.01	□□□□□ -0.17
BRCA1-222	ENST00000493919	COL11A2	P13942	1736 aa	Predicted RBP	14.01	□□□□□ -0.17
BRCA1-222	ENST00000493919	IBTK	Q9P2D0	1353 aa	Predicted RBP	14	□□□□□ -0.17
BRCA1-222	ENST00000493919	DYNC1I1	O14576	645 aa		14	□□□□□ -0.17
BRCA1-222	ENST00000493919	RARS	P54136	660 aa	Known RBP	14	□□□□□ -0.17
BRCA1-222	ENST00000493919	MYBPC2	Q14324	1141 aa		14	□□□□□ -0.17
BRCA1-222	ENST00000493919	DNAAF4	Q8WXU2	420 aa		14	□□□□□ -0.17
BRCA1-222	ENST00000493919	ISCA1	Q9BUE6	129 aa		14	□□□□□ -0.17
BRCA1-222	ENST00000493919	UTP14A	Q9BVJ6	771 aa	Known RBP	14	□□□□□ -0.17
BRCA1-222	ENST00000493919	TRMT112	Q9UI30	125 aa	Known RBP	14	□□□□□ -0.17
BRCA1-222	ENST00000493919		A0A0G2JLW4	131 aa		14	□□□□□ -0.17
BRCA1-222	ENST00000493919	CALR	P27797	417 aa	Known RBP	14	□□□□□ -0.17
BRCA1-222	ENST00000493919	CHRNA5	P30532	468 aa		14	□□□□□ -0.17
BRCA1-222	ENST00000493919	BRPF1	P55201	1214 aa	Predicted RBP	14	□□□□□ -0.17
BRCA1-222	ENST00000493919	ERFE	Q4G0M1	354 aa		14	□□□□□ -0.17
BRCA1-222	ENST00000493919	SLC4A10	Q6U841	1118 aa		14	□□□□□ -0.17
BRCA1-222	ENST00000493919	KCTD17	Q8N5Z5	321 aa		14	□□□□□ -0.17
BRCA1-222	ENST00000493919	CCDC66	A2RUB6	948 aa		13.99	□□□□□ -0.17
BRCA1-222	ENST00000493919	DPEP1	P16444	411 aa		13.99	□□□□□ -0.17
BRCA1-222	ENST00000493919	CWF19L2	Q2TBE0	894 aa	Known RBP	13.99	□□□□□ -0.17
BRCA1-222	ENST00000493919	FEZ2	Q9UHY8	353 aa	Predicted RBP	13.99	□□□□□ -0.17
BRCA1-222	ENST00000493919	TGFB2	P61812	414 aa		13.98	□□□□□ -0.17
BRCA1-222	ENST00000493919	ITFG2	Q969R8	447 aa		13.98	□□□□□ -0.17
BRCA1-222	ENST00000493919	NCAPG	Q9BPX3	1015 aa		13.98	□□□□□ -0.17
BRCA1-222	ENST00000493919	BRIP1	Q9BX63	1249 aa		13.98	□□□□□ -0.17
BRCA1-222	ENST00000493919	CWC25	Q9NXE8	425 aa	Predicted RBP	13.98	□□□□□ -0.17
BRCA1-222	ENST00000493919	PTPRC	P08575	1304 aa		13.98	□□□□□ -0.17
BRCA1-222	ENST00000493919	KIF16B	Q96L93	1317 aa		13.98	□□□□□ -0.17
BRCA1-222	ENST00000493919	IGKV5-2	P06315	115 aa		13.98	□□□□□ -0.17
BRCA1-222	ENST00000493919	PDE6B	P35913	854 aa		13.98	□□□□□ -0.17
BRCA1-222	ENST00000493919	CTR9	Q6PD62	1173 aa		13.98	□□□□□ -0.17
BRCA1-222	ENST00000493919	C2CD5	Q86YS7	1000 aa		13.98	□□□□□ -0.17
BRCA1-222	ENST00000493919	FAM210A	Q96ND0	272 aa		13.98	□□□□□ -0.17
BRCA1-222	ENST00000493919	DLEC1	Q9Y238	1755 aa		13.97	□□□□□ -0.17
BRCA1-222	ENST00000493919	SH3TC1	Q8TE82	1336 aa		13.97	□□□□□ -0.17
BRCA1-222	ENST00000493919	KIF1C	O43896	1103 aa	Known RBP	13.97	□□□□□ -0.17
BRCA1-222	ENST00000493919	BCAR3	O75815	825 aa		13.97	□□□□□ -0.17
BRCA1-222	ENST00000493919	SYNE4	Q8N205	404 aa		13.97	□□□□□ -0.17
BRCA1-222	ENST00000493919	ZNF513	Q8N8E2	541 aa	Predicted RBP	13.97	□□□□□ -0.17
BRCA1-222	ENST00000493919	CCDC191	Q8NCU4	936 aa		13.97	□□□□□ -0.17
BRCA1-222	ENST00000493919	FAM89A	Q96GI7	184 aa		13.97	□□□□□ -0.17
BRCA1-222	ENST00000493919	CACNA1S	Q13698	1873 aa		13.97	□□□□□ -0.17
BRCA1-222	ENST00000493919	RNF123	Q5XPI4	1314 aa		13.96	□□□□□ -0.17
BRCA1-222	ENST00000493919	NEURL1B	A8MQ27	555 aa		13.96	□□□□□ -0.17
BRCA1-222	ENST00000493919		H0YIN7	160 aa		13.96	□□□□□ -0.17
BRCA1-222	ENST00000493919	OFD1	O75665	1012 aa		13.96	□□□□□ -0.17
BRCA1-222	ENST00000493919	BRCA1	P38398	1863 aa	Known RBP	13.96	□□□□□ -0.17
BRCA1-222	ENST00000493919	ARMCX6	Q7L4S7	300 aa		13.96	□□□□□ -0.17
BRCA1-222	ENST00000493919	NOB1	Q9ULX3	412 aa	Known RBP	13.96	□□□□□ -0.17
BRCA1-222	ENST00000493919	DDX60	Q8IY21	1712 aa	Known RBP	13.96	□□□□□ -0.18
BRCA1-222	ENST00000493919	TULP2	O00295	520 aa		13.96	□□□□□ -0.18
BRCA1-222	ENST00000493919	HCLS1	P14317	486 aa	Predicted RBP	13.96	□□□□□ -0.18
BRCA1-222	ENST00000493919	TRIM28	Q13263	835 aa	Known RBP	13.96	□□□□□ -0.18
BRCA1-222	ENST00000493919	JARID2	Q92833	1246 aa	Predicted RBP	13.96	□□□□□ -0.18
BRCA1-222	ENST00000493919	FAM13B	Q9NYF5	915 aa		13.96	□□□□□ -0.18
BRCA1-222	ENST00000493919	MTMR7	Q9Y216	660 aa		13.96	□□□□□ -0.18
BRCA1-222	ENST00000493919	LAMB2	P55268	1798 aa		13.95	□□□□□ -0.18
BRCA1-222	ENST00000493919	ZBTB22	O15209	634 aa		13.95	□□□□□ -0.18
BRCA1-222	ENST00000493919	GPR162	Q16538	588 aa		13.95	□□□□□ -0.18
BRCA1-222	ENST00000493919	SDR16C5	Q8N3Y7	309 aa		13.95	□□□□□ -0.18
BRCA1-222	ENST00000493919	LINS1	Q8NG48	757 aa		13.95	□□□□□ -0.18
BRCA1-222	ENST00000493919	CHMP4C	Q96CF2	233 aa		13.95	□□□□□ -0.18
BRCA1-222	ENST00000493919	BCS1L	Q9Y276	419 aa		13.95	□□□□□ -0.18
BRCA1-222	ENST00000493919	RIPOR2	Q9Y4F9	1068 aa		13.95	□□□□□ -0.18
BRCA1-222	ENST00000493919	RIC1	Q4ADV7	1423 aa		13.94	□□□□□ -0.18
BRCA1-222	ENST00000493919	DCAF8L1	A6NGE4	600 aa		13.94	□□□□□ -0.18
BRCA1-222	ENST00000493919	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	13.94	□□□□□ -0.18
BRCA1-222	ENST00000493919	BEND3	Q5T5X7	828 aa		13.94	□□□□□ -0.18
BRCA1-222	ENST00000493919	FOXD4L3	Q6VB84	417 aa	Predicted RBP	13.94	□□□□□ -0.18
BRCA1-222	ENST00000493919	C3orf67	Q6ZVT6	689 aa		13.94	□□□□□ -0.18
BRCA1-222	ENST00000493919	MSL3	Q8N5Y2	521 aa	Known RBP	13.94	□□□□□ -0.18
BRCA1-222	ENST00000493919	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	13.94	□□□□□ -0.18
BRCA1-222	ENST00000493919	PAIP2	Q9BPZ3	127 aa	Known RBP	13.94	□□□□□ -0.18
BRCA1-222	ENST00000493919	SRCIN1	Q9C0H9	1055 aa		13.94	□□□□□ -0.18
BRCA1-222	ENST00000493919	PIM2	Q9P1W9	311 aa		13.94	□□□□□ -0.18
BRCA1-222	ENST00000493919	IRS4	O14654	1257 aa	Predicted RBP	13.93	□□□□□ -0.18
BRCA1-222	ENST00000493919	PCCA	P05165	728 aa	Predicted RBP	13.93	□□□□□ -0.18
BRCA1-222	ENST00000493919	KCNA3	P22001	575 aa		13.93	□□□□□ -0.18
BRCA1-222	ENST00000493919	KCNJ4	P48050	445 aa		13.93	□□□□□ -0.18
BRCA1-222	ENST00000493919	CT47A1	Q5JQC4	288 aa	Predicted RBP	13.93	□□□□□ -0.18
BRCA1-222	ENST00000493919	UBE3B	Q7Z3V4	1068 aa		13.93	□□□□□ -0.18
BRCA1-222	ENST00000493919	RPGR	Q92834	1020 aa	Known RBP	13.93	□□□□□ -0.18
BRCA1-222	ENST00000493919	NLRP3	Q96P20	1036 aa		13.93	□□□□□ -0.18
BRCA1-222	ENST00000493919	KIF3A	Q9Y496	699 aa		13.93	□□□□□ -0.18
BRCA1-222	ENST00000493919	NUB1	Q9Y5A7	615 aa		13.93	□□□□□ -0.18
BRCA1-222	ENST00000493919	SRGN	P10124	158 aa		13.92	□□□□□ -0.18
BRCA1-222	ENST00000493919	YBX3	P16989	372 aa	Known RBP eCLIP	13.92	□□□□□ -0.18	7e-6	■■■□□ 18.9
BRCA1-222	ENST00000493919	GCKR	Q14397	625 aa		13.92	□□□□□ -0.18
BRCA1-222	ENST00000493919	DALRD3	Q5D0E6	543 aa	Known RBP	13.92	□□□□□ -0.18
BRCA1-222	ENST00000493919	TIGD1	Q96MW7	591 aa		13.92	□□□□□ -0.18
BRCA1-222	ENST00000493919	API5	Q9BZZ5	524 aa	Known RBP	13.92	□□□□□ -0.18
BRCA1-222	ENST00000493919	NBPF3	Q9H094	633 aa		13.92	□□□□□ -0.18
BRCA1-222	ENST00000493919	PDZRN3	Q9UPQ7	1066 aa		13.92	□□□□□ -0.18
BRCA1-222	ENST00000493919	ZBTB12	Q9Y330	459 aa	Predicted RBP	13.92	□□□□□ -0.18
BRCA1-222	ENST00000493919	MASTL	Q96GX5	879 aa		13.92	□□□□□ -0.18

Retrieved 100 of 20,778 RNA–protein pairs in 105.1 ms