RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 CCDC57Q2TAC2 916 aa19.96■□□□□ 0.79
UPF3A-208ENST00000484246 LARGE2Q8N3Y3 721 aa19.96■□□□□ 0.79
UPF3A-208ENST00000484246 TBC1D16Q8TBP0 767 aa19.96■□□□□ 0.79
UPF3A-208ENST00000484246 MEIS3Q99687 375 aa19.96■□□□□ 0.79
UPF3A-208ENST00000484246 GPBP1L1Q9HC44 474 aaPredicted RBP19.96■□□□□ 0.79
UPF3A-208ENST00000484246 POLLQ9UGP5 575 aa19.96■□□□□ 0.79
UPF3A-208ENST00000484246 TAF1P21675 1872 aa19.96■□□□□ 0.79
UPF3A-208ENST00000484246 GNAI3P08754 354 aa19.95■□□□□ 0.78
UPF3A-208ENST00000484246 JDP2Q8WYK2 163 aa19.95■□□□□ 0.78
UPF3A-208ENST00000484246 EYA3Q99504 573 aa19.95■□□□□ 0.78
UPF3A-208ENST00000484246 MPHOSPH8Q99549 860 aa19.95■□□□□ 0.78
UPF3A-208ENST00000484246 GGA1Q9UJY5 639 aa19.95■□□□□ 0.78
UPF3A-208ENST00000484246 ATP2B4P23634 1241 aa19.94■□□□□ 0.78
UPF3A-208ENST00000484246 AOC3Q16853 763 aa19.94■□□□□ 0.78
UPF3A-208ENST00000484246 NIM1KQ8IY84 436 aa19.94■□□□□ 0.78
UPF3A-208ENST00000484246 DZIP1LQ8IYY4 767 aaKnown RBP19.94■□□□□ 0.78
UPF3A-208ENST00000484246 TMEM57Q8N5G2 664 aa19.94■□□□□ 0.78
UPF3A-208ENST00000484246 CHMP3Q9Y3E7 222 aa19.94■□□□□ 0.78
UPF3A-208ENST00000484246 UFL1O94874 794 aa19.93■□□□□ 0.78
UPF3A-208ENST00000484246 DPY19L2Q6NUT2 758 aa19.93■□□□□ 0.78
UPF3A-208ENST00000484246 FTSJ3Q8IY81 847 aaKnown RBP19.93■□□□□ 0.78
UPF3A-208ENST00000484246 CLUAP1Q96AJ1 413 aa19.93■□□□□ 0.78
UPF3A-208ENST00000484246 L3MBTL3Q96JM7 780 aaPredicted RBP19.93■□□□□ 0.78
UPF3A-208ENST00000484246 ANKRD2Q9GZV1 360 aa19.93■□□□□ 0.78
UPF3A-208ENST00000484246 ANKIB1Q9P2G1 1089 aa19.93■□□□□ 0.78
UPF3A-208ENST00000484246 MS4A1P11836 297 aa19.92■□□□□ 0.78
UPF3A-208ENST00000484246 RLBP1P12271 317 aa19.92■□□□□ 0.78
UPF3A-208ENST00000484246 WASHC4Q2M389 1173 aa19.92■□□□□ 0.78
UPF3A-208ENST00000484246 IFFO2Q5TF58 517 aa19.92■□□□□ 0.78
UPF3A-208ENST00000484246 LEMD3Q9Y2U8 911 aa19.92■□□□□ 0.78
UPF3A-208ENST00000484246 ZNF541Q9H0D2 1346 aa19.92■□□□□ 0.78
UPF3A-208ENST00000484246 MED23Q9ULK4 1368 aa19.92■□□□□ 0.78
UPF3A-208ENST00000484246 WDR90Q96KV7 1748 aa19.91■□□□□ 0.78
UPF3A-208ENST00000484246 C6orf229H3BNL8 230 aa19.91■□□□□ 0.78
UPF3A-208ENST00000484246 KIF3CO14782 793 aa19.91■□□□□ 0.78
UPF3A-208ENST00000484246 MTX1Q13505 466 aa19.91■□□□□ 0.78
UPF3A-208ENST00000484246 TAF7LQ5H9L4 462 aa19.91■□□□□ 0.78
UPF3A-208ENST00000484246 ZNF526Q8TF50 670 aaPredicted RBP19.91■□□□□ 0.78
UPF3A-208ENST00000484246 ZNRF3Q9ULT6 936 aa19.91■□□□□ 0.78
UPF3A-208ENST00000484246 LRRFIP2Q9Y608 721 aaKnown RBP19.91■□□□□ 0.78
UPF3A-208ENST00000484246 RFX5P48382 616 aaPredicted RBP19.9■□□□□ 0.78
UPF3A-208ENST00000484246 CHRNDQ07001 517 aa19.9■□□□□ 0.78
UPF3A-208ENST00000484246 LDHAL6AQ6ZMR3 332 aa19.9■□□□□ 0.78
UPF3A-208ENST00000484246 GPC2Q8N158 579 aa19.9■□□□□ 0.78
UPF3A-208ENST00000484246 EIF6P56537 245 aaKnown RBP19.89■□□□□ 0.77
UPF3A-208ENST00000484246 C15orf52Q6ZUT6 534 aaKnown RBP19.89■□□□□ 0.77
UPF3A-208ENST00000484246 ZNF594Q96JF6 807 aaPredicted RBP19.89■□□□□ 0.77
UPF3A-208ENST00000484246 NMRK2Q9NPI5 230 aa19.89■□□□□ 0.77
UPF3A-208ENST00000484246 FBXO3Q9UK99 471 aa19.89■□□□□ 0.77
UPF3A-208ENST00000484246 ZC3H12CQ9C0D7 883 aaKnown RBP19.88■□□□□ 0.77
UPF3A-208ENST00000484246 RIPOR2Q9Y4F9 1068 aa19.88■□□□□ 0.77
UPF3A-208ENST00000484246 CEP350Q5VT06 3117 aa19.88■□□□□ 0.77
UPF3A-208ENST00000484246 CCDC88AQ3V6T2 1871 aa19.88■□□□□ 0.77
UPF3A-208ENST00000484246 ZNF804BA4D1E1 1349 aa19.87■□□□□ 0.77
UPF3A-208ENST00000484246 IRS2Q9Y4H2 1338 aa19.87■□□□□ 0.77
UPF3A-208ENST00000484246 YDJCA8MPS7 323 aa19.87■□□□□ 0.77
UPF3A-208ENST00000484246 DDNO94850 711 aaPredicted RBP19.87■□□□□ 0.77
UPF3A-208ENST00000484246 GNAI2P04899 355 aa19.87■□□□□ 0.77
UPF3A-208ENST00000484246 YTHDC1Q96MU7 727 aaKnown RBP19.87■□□□□ 0.77
UPF3A-208ENST00000484246 CNNM1Q9NRU3 951 aa19.87■□□□□ 0.77
UPF3A-208ENST00000484246 ZNF609O15014 1411 aa19.86■□□□□ 0.77
UPF3A-208ENST00000484246 MROH5Q6ZUA9 1318 aa19.86■□□□□ 0.77
UPF3A-208ENST00000484246 POTECB2RU33 542 aa19.86■□□□□ 0.77
UPF3A-208ENST00000484246 ZBTB7BO15156 539 aaPredicted RBP19.86■□□□□ 0.77
UPF3A-208ENST00000484246 VEGFAP15692 232 aaPredicted RBP19.86■□□□□ 0.77
UPF3A-208ENST00000484246 PTPN12Q05209 780 aaKnown RBP19.86■□□□□ 0.77
UPF3A-208ENST00000484246 CXCL9Q07325 125 aa19.86■□□□□ 0.77
UPF3A-208ENST00000484246 ITPRIPQ8IWB1 547 aa19.86■□□□□ 0.77
UPF3A-208ENST00000484246 GPR101Q96P66 508 aaPredicted RBP19.86■□□□□ 0.77
UPF3A-208ENST00000484246 IQCA1LA6NCM1 817 aa19.85■□□□□ 0.77
UPF3A-208ENST00000484246 PDE3AQ14432 1141 aa19.85■□□□□ 0.77
UPF3A-208ENST00000484246 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.85■□□□□ 0.77
UPF3A-208ENST00000484246 PANK1Q8TE04 598 aa19.85■□□□□ 0.77
UPF3A-208ENST00000484246 SPEF2Q9C093 1822 aa19.84■□□□□ 0.77
UPF3A-208ENST00000484246 ECE2O60344 883 aa19.84■□□□□ 0.77
UPF3A-208ENST00000484246 CIAO1O76071 339 aa19.84■□□□□ 0.77
UPF3A-208ENST00000484246 CIAPIN1Q6FI81 312 aa19.84■□□□□ 0.77
UPF3A-208ENST00000484246 VGLL2Q8N8G2 317 aa19.84■□□□□ 0.77
UPF3A-208ENST00000484246 PUS3Q9BZE2 481 aaKnown RBP19.84■□□□□ 0.77
UPF3A-208ENST00000484246 DBNDD1Q9H9R9 158 aa19.84■□□□□ 0.77
UPF3A-208ENST00000484246 COPRSQ9NQ92 184 aa19.84■□□□□ 0.77
UPF3A-208ENST00000484246 WTIPA6NIX2 430 aaPredicted RBP19.83■□□□□ 0.77
UPF3A-208ENST00000484246 EYA2O00167 538 aa19.83■□□□□ 0.77
UPF3A-208ENST00000484246 RIMBP2O15034 1052 aa19.83■□□□□ 0.77
UPF3A-208ENST00000484246 UBE4AQ14139 1066 aa19.83■□□□□ 0.77
UPF3A-208ENST00000484246 MVPQ14764 893 aaKnown RBP19.83■□□□□ 0.77
UPF3A-208ENST00000484246 TNIP1Q15025 636 aa19.83■□□□□ 0.77
UPF3A-208ENST00000484246 PODNQ7Z5L7 613 aa19.83■□□□□ 0.77
UPF3A-208ENST00000484246 COA1Q9GZY4 146 aa19.83■□□□□ 0.77
UPF3A-208ENST00000484246 RRAGCQ9HB90 399 aa19.83■□□□□ 0.77
UPF3A-208ENST00000484246 A0A1B0GUL6 1792 aa19.83■□□□□ 0.76
UPF3A-208ENST00000484246 KCNJ4P48050 445 aa19.82■□□□□ 0.76
UPF3A-208ENST00000484246 SCNN1DP51172 638 aa19.82■□□□□ 0.76
UPF3A-208ENST00000484246 LRRC24Q50LG9 513 aa19.82■□□□□ 0.76
UPF3A-208ENST00000484246 KLHDC4Q8TBB5 520 aa19.82■□□□□ 0.76
UPF3A-208ENST00000484246 TAF5LO75529 589 aa19.81■□□□□ 0.76
UPF3A-208ENST00000484246 TOMM70O94826 608 aa19.81■□□□□ 0.76
UPF3A-208ENST00000484246 DOK7Q18PE1 504 aa19.81■□□□□ 0.76
UPF3A-208ENST00000484246 DDX19BQ9UMR2 479 aa19.81■□□□□ 0.76
UPF3A-208ENST00000484246 SRGAP3O43295 1099 aa19.8■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms