RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 GNAT3A8MTJ3 354 aa10.86□□□□□ -0.67
USP54-211ENST00000474929 GNRH1P01148 92 aa10.86□□□□□ -0.67
USP54-211ENST00000474929 PRMT2P55345 433 aa10.86□□□□□ -0.67
USP54-211ENST00000474929 ZNF280AP59817 542 aaPredicted RBP10.86□□□□□ -0.67
USP54-211ENST00000474929 SCARF1Q14162 830 aa10.86□□□□□ -0.67
USP54-211ENST00000474929 LRIT3Q3SXY7 679 aa10.86□□□□□ -0.67
USP54-211ENST00000474929 AGBL3Q8NEM8 1001 aa10.86□□□□□ -0.67
USP54-211ENST00000474929 MTMR10Q9NXD2 777 aa10.86□□□□□ -0.67
USP54-211ENST00000474929 PTCH2Q9Y6C5 1203 aa10.86□□□□□ -0.67
USP54-211ENST00000474929 COL1A1P02452 1464 aaPredicted RBP10.86□□□□□ -0.67
USP54-211ENST00000474929 NUP98P52948 1817 aa10.86□□□□□ -0.67
USP54-211ENST00000474929 RPTORQ8N122 1335 aa10.85□□□□□ -0.67
USP54-211ENST00000474929 ANKRD36CQ5JPF3 1778 aa10.85□□□□□ -0.67
USP54-211ENST00000474929 ECE2O60344 883 aa10.85□□□□□ -0.67
USP54-211ENST00000474929 WDHD1O75717 1129 aaPredicted RBP10.85□□□□□ -0.67
USP54-211ENST00000474929 BMP8BP34820 402 aa10.85□□□□□ -0.67
USP54-211ENST00000474929 HLFQ16534 295 aa10.85□□□□□ -0.67
USP54-211ENST00000474929 DDX46Q7L014 1031 aaKnown RBP10.85□□□□□ -0.67
USP54-211ENST00000474929 USP16Q9Y5T5 823 aa10.85□□□□□ -0.67
USP54-211ENST00000474929 CEMIPQ8WUJ3 1361 aa10.85□□□□□ -0.67
USP54-211ENST00000474929 MAP3K15Q6ZN16 1313 aa10.84□□□□□ -0.67
USP54-211ENST00000474929 EVI5O60447 810 aa10.84□□□□□ -0.67
USP54-211ENST00000474929 NTSR2O95665 410 aa10.84□□□□□ -0.67
USP54-211ENST00000474929 VIL1P09327 827 aaKnown RBP10.84□□□□□ -0.67
USP54-211ENST00000474929 PIP4K2AP48426 406 aaPredicted RBP10.84□□□□□ -0.67
USP54-211ENST00000474929 CRHR2Q13324 411 aa10.84□□□□□ -0.67
USP54-211ENST00000474929 GRAPQ13588 217 aa10.84□□□□□ -0.67
USP54-211ENST00000474929 MOB2Q70IA6 237 aa10.84□□□□□ -0.67
USP54-211ENST00000474929 GRAPLQ8TC17 118 aaPredicted RBP10.84□□□□□ -0.67
USP54-211ENST00000474929 DBNDD1Q9H9R9 158 aa10.84□□□□□ -0.67
USP54-211ENST00000474929 VCANP13611 3396 aa10.83□□□□□ -0.67
USP54-211ENST00000474929 TTC28Q96AY4 2481 aa10.83□□□□□ -0.68
USP54-211ENST00000474929 HOXD11P31277 338 aaPredicted RBP10.83□□□□□ -0.68
USP54-211ENST00000474929 MMP14P50281 582 aa10.83□□□□□ -0.68
USP54-211ENST00000474929 CACNB1Q02641 598 aaPredicted RBP10.83□□□□□ -0.68
USP54-211ENST00000474929 KIF22Q14807 665 aa10.83□□□□□ -0.68
USP54-211ENST00000474929 MYOZ2Q9NPC6 264 aa10.83□□□□□ -0.68
USP54-211ENST00000474929 UBN2Q6ZU65 1347 aa10.83□□□□□ -0.68
USP54-211ENST00000474929 RTL9Q8NET4 1388 aa10.82□□□□□ -0.68
USP54-211ENST00000474929 G3V3G9 751 aa10.82□□□□□ -0.68
USP54-211ENST00000474929 IGF2BP3O00425 579 aaKnown RBP eCLIP10.82□□□□□ -0.68
USP54-211ENST00000474929 GJA8P48165 433 aa10.82□□□□□ -0.68
USP54-211ENST00000474929 LDLRAD1Q5T700 205 aa10.82□□□□□ -0.68
USP54-211ENST00000474929 DCAF8Q5TAQ9 597 aa10.82□□□□□ -0.68
USP54-211ENST00000474929 SUSD4Q5VX71 490 aa10.82□□□□□ -0.68
USP54-211ENST00000474929 UBE2Q1Q7Z7E8 422 aa10.82□□□□□ -0.68
USP54-211ENST00000474929 MORC1Q86VD1 984 aa10.82□□□□□ -0.68
USP54-211ENST00000474929 SHISA4Q96DD7 197 aa10.82□□□□□ -0.68
USP54-211ENST00000474929 ASTN2O75129 1339 aaPredicted RBP10.82□□□□□ -0.68
USP54-211ENST00000474929 NBPF26B4DH59 902 aa10.81□□□□□ -0.68
USP54-211ENST00000474929 FARP2O94887 1054 aaPredicted RBP10.81□□□□□ -0.68
USP54-211ENST00000474929 HMOX1P09601 288 aa10.81□□□□□ -0.68
USP54-211ENST00000474929 USP17L8P0C7I0 530 aa10.81□□□□□ -0.68
USP54-211ENST00000474929 PTPN12Q05209 780 aaKnown RBP10.81□□□□□ -0.68
USP54-211ENST00000474929 SLC10A5Q5PT55 438 aa10.81□□□□□ -0.68
USP54-211ENST00000474929 NBPF10Q6P3W6 841 aaKnown RBP10.81□□□□□ -0.68
USP54-211ENST00000474929 RSBN1LQ6PCB5 846 aaPredicted RBP10.81□□□□□ -0.68
USP54-211ENST00000474929 SLC51AQ86UW1 340 aa10.81□□□□□ -0.68
USP54-211ENST00000474929 APOBEC3FQ8IUX4 373 aaKnown RBP10.81□□□□□ -0.68
USP54-211ENST00000474929 SLC10A4Q96EP9 437 aa10.81□□□□□ -0.68
USP54-211ENST00000474929 PSME4Q14997 1843 aa10.81□□□□□ -0.68
USP54-211ENST00000474929 SPTBN5Q9NRC6 3674 aaKnown RBP10.81□□□□□ -0.68
USP54-211ENST00000474929 WTIPA6NIX2 430 aaPredicted RBP10.8□□□□□ -0.68
USP54-211ENST00000474929 C6orf229H3BNL8 230 aa10.8□□□□□ -0.68
USP54-211ENST00000474929 GJB1P08034 283 aa10.8□□□□□ -0.68
USP54-211ENST00000474929 GPTP24298 496 aa10.8□□□□□ -0.68
USP54-211ENST00000474929 Q7L0L9 218 aa10.8□□□□□ -0.68
USP54-211ENST00000474929 IL17REQ8NFR9 667 aa10.8□□□□□ -0.68
USP54-211ENST00000474929 WNK4Q96J92 1243 aa10.8□□□□□ -0.68
USP54-211ENST00000474929 UTP14AQ9BVJ6 771 aaKnown RBP10.8□□□□□ -0.68
USP54-211ENST00000474929 ZFYVE28Q9HCC9 887 aa10.8□□□□□ -0.68
USP54-211ENST00000474929 TAF1P21675 1872 aa10.8□□□□□ -0.68
USP54-211ENST00000474929 PPP1R12BO60237 982 aaPredicted RBP10.79□□□□□ -0.68
USP54-211ENST00000474929 MAP3K11Q16584 847 aa10.79□□□□□ -0.68
USP54-211ENST00000474929 FAM109BQ6ICB4 259 aaPredicted RBP10.79□□□□□ -0.68
USP54-211ENST00000474929 GIGYF2Q6Y7W6 1299 aaKnown RBP10.79□□□□□ -0.68
USP54-211ENST00000474929 C3orf67Q6ZVT6 689 aa10.79□□□□□ -0.68
USP54-211ENST00000474929 ZNF34Q8IZ26 560 aa10.79□□□□□ -0.68
USP54-211ENST00000474929 TDHQ8IZJ6 230 aa10.79□□□□□ -0.68
USP54-211ENST00000474929 OGFOD1Q8N543 542 aa10.79□□□□□ -0.68
USP54-211ENST00000474929 SH3TC2Q8TF17 1288 aa10.79□□□□□ -0.68
USP54-211ENST00000474929 ZC3H12CQ9C0D7 883 aaKnown RBP10.79□□□□□ -0.68
USP54-211ENST00000474929 STAP2Q9UGK3 403 aa10.79□□□□□ -0.68
USP54-211ENST00000474929 ANGEL1Q9UNK9 670 aaKnown RBP10.79□□□□□ -0.68
USP54-211ENST00000474929 LAMB2P55268 1798 aa10.79□□□□□ -0.68
USP54-211ENST00000474929 TESPA1A2RU30 521 aaPredicted RBP10.78□□□□□ -0.68
USP54-211ENST00000474929 MYCP01106 439 aaPredicted RBP10.78□□□□□ -0.68
USP54-211ENST00000474929 UBXN2AP68543 259 aa10.78□□□□□ -0.68
USP54-211ENST00000474929 GDF15Q99988 308 aa10.78□□□□□ -0.68
USP54-211ENST00000474929 NSFL1CQ9UNZ2 370 aaKnown RBP10.78□□□□□ -0.68
USP54-211ENST00000474929 FAM205AQ6ZU69 1335 aa10.78□□□□□ -0.68
USP54-211ENST00000474929 MYO3BQ8WXR4 1341 aa10.78□□□□□ -0.68
USP54-211ENST00000474929 RIMBP2O15034 1052 aa10.77□□□□□ -0.69
USP54-211ENST00000474929 ARIH1Q9Y4X5 557 aaPredicted RBP10.77□□□□□ -0.69
USP54-211ENST00000474929 PPP2R3BQ9Y5P8 575 aa10.77□□□□□ -0.69
USP54-211ENST00000474929 SCN9AQ15858 1988 aa10.77□□□□□ -0.69
USP54-211ENST00000474929 SSC5DA1L4H1 1573 aa10.77□□□□□ -0.69
USP54-211ENST00000474929 TNFRSF10AO00220 468 aa10.76□□□□□ -0.69
USP54-211ENST00000474929 HOXD10P28358 340 aa10.76□□□□□ -0.69
USP54-211ENST00000474929 TAF1CQ15572 869 aaPredicted RBP10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms