RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 PTMAP06454 111 aaKnown RBP11.51□□□□□ -0.57
HDAC3-205ENST00000469550 PRR5LQ6MZQ0 368 aa11.51□□□□□ -0.57
HDAC3-205ENST00000469550 TMEM87AQ8NBN3 555 aa11.51□□□□□ -0.57
HDAC3-205ENST00000469550 DLG5Q8TDM6 1919 aa11.51□□□□□ -0.57
HDAC3-205ENST00000469550 GLTPD2A6NH11 291 aa11.5□□□□□ -0.57
HDAC3-205ENST00000469550 BTBD11A6QL63 1104 aa11.5□□□□□ -0.57
HDAC3-205ENST00000469550 HTATSF1O43719 755 aaKnown RBP11.5□□□□□ -0.57
HDAC3-205ENST00000469550 PDE1AP54750 535 aa11.5□□□□□ -0.57
HDAC3-205ENST00000469550 RRAGCQ9HB90 399 aa11.5□□□□□ -0.57
HDAC3-205ENST00000469550 KDM3BQ7LBC6 1761 aa11.5□□□□□ -0.57
HDAC3-205ENST00000469550 BICDL1Q6ZP65 573 aa11.5□□□□□ -0.57
HDAC3-205ENST00000469550 RNF214Q8ND24 703 aa11.5□□□□□ -0.57
HDAC3-205ENST00000469550 SMC1BQ8NDV3 1235 aa11.5□□□□□ -0.57
HDAC3-205ENST00000469550 ESYT1Q9BSJ8 1104 aa11.5□□□□□ -0.57
HDAC3-205ENST00000469550 CACNA1SQ13698 1873 aa11.5□□□□□ -0.57
HDAC3-205ENST00000469550 WDR33Q9C0J8 1336 aaKnown RBP11.49□□□□□ -0.57
HDAC3-205ENST00000469550 SLX4Q8IY92 1834 aa11.49□□□□□ -0.57
HDAC3-205ENST00000469550 CHL1O00533 1208 aa11.49□□□□□ -0.57
HDAC3-205ENST00000469550 KCNQ3O43525 872 aa11.49□□□□□ -0.57
HDAC3-205ENST00000469550 SMARCA5O60264 1052 aaPredicted RBP11.49□□□□□ -0.57
HDAC3-205ENST00000469550 A1BGP04217 495 aa11.49□□□□□ -0.57
HDAC3-205ENST00000469550 STYK1Q6J9G0 422 aa11.49□□□□□ -0.57
HDAC3-205ENST00000469550 JMYQ8N9B5 988 aa11.49□□□□□ -0.57
HDAC3-205ENST00000469550 SPTLC3Q9NUV7 552 aa11.49□□□□□ -0.57
HDAC3-205ENST00000469550 TBC1D2BQ9UPU7 963 aa11.49□□□□□ -0.57
HDAC3-205ENST00000469550 SALL3Q9BXA9 1300 aa11.49□□□□□ -0.57
HDAC3-205ENST00000469550 NOLC1Q14978 699 aaKnown RBP eCLIP11.48□□□□□ -0.57
HDAC3-205ENST00000469550 CLEC4GQ6UXB4 293 aa11.48□□□□□ -0.57
HDAC3-205ENST00000469550 CNBD1Q8NA66 436 aa11.48□□□□□ -0.57
HDAC3-205ENST00000469550 KLRG1Q96E93 195 aa11.48□□□□□ -0.57
HDAC3-205ENST00000469550 SETDB2Q96T68 719 aa11.48□□□□□ -0.57
HDAC3-205ENST00000469550 SNRPA1P09661 255 aaKnown RBP11.48□□□□□ -0.57
HDAC3-205ENST00000469550 VEGFAP15692 232 aaPredicted RBP11.48□□□□□ -0.57
HDAC3-205ENST00000469550 DZIP3Q86Y13 1208 aaKnown RBP11.48□□□□□ -0.57
HDAC3-205ENST00000469550 DMTNQ08495 405 aa11.47□□□□□ -0.57
HDAC3-205ENST00000469550 CCDC183Q5T5S1 534 aa11.47□□□□□ -0.57
HDAC3-205ENST00000469550 RTF1Q92541 710 aaKnown RBP11.47□□□□□ -0.57
HDAC3-205ENST00000469550 CNKSR1Q969H4 720 aa11.47□□□□□ -0.57
HDAC3-205ENST00000469550 CHAMP1Q96JM3 812 aa11.47□□□□□ -0.57
HDAC3-205ENST00000469550 MEIS3Q99687 375 aa11.47□□□□□ -0.57
HDAC3-205ENST00000469550 USP16Q9Y5T5 823 aa11.47□□□□□ -0.57
HDAC3-205ENST00000469550 TPM3P06753 285 aa11.47□□□□□ -0.57
HDAC3-205ENST00000469550 SRGNP10124 158 aa11.47□□□□□ -0.57
HDAC3-205ENST00000469550 CCT4P50991 539 aaKnown RBP11.47□□□□□ -0.57
HDAC3-205ENST00000469550 ST5P78524 1137 aa11.47□□□□□ -0.57
HDAC3-205ENST00000469550 FKBP5Q13451 457 aaPredicted RBP11.47□□□□□ -0.57
HDAC3-205ENST00000469550 SOGA3Q5TF21 947 aa11.47□□□□□ -0.57
HDAC3-205ENST00000469550 KLRG2A4D1S0 409 aaPredicted RBP11.46□□□□□ -0.58
HDAC3-205ENST00000469550 DNTTIP2Q5QJE6 756 aaKnown RBP11.46□□□□□ -0.58
HDAC3-205ENST00000469550 USP48Q86UV5 1035 aa11.46□□□□□ -0.58
HDAC3-205ENST00000469550 ZNF622Q969S3 477 aaKnown RBP eCLIP11.46□□□□□ -0.58
HDAC3-205ENST00000469550 MASTLQ96GX5 879 aa11.46□□□□□ -0.58
HDAC3-205ENST00000469550 SRCIN1Q9C0H9 1055 aa11.46□□□□□ -0.58
HDAC3-205ENST00000469550 ZNF652Q9Y2D9 606 aa11.46□□□□□ -0.58
HDAC3-205ENST00000469550 ZNF330Q9Y3S2 320 aaPredicted RBP11.46□□□□□ -0.58
HDAC3-205ENST00000469550 POTECB2RU33 542 aa11.45□□□□□ -0.58
HDAC3-205ENST00000469550 MX1P20591 662 aa11.45□□□□□ -0.58
HDAC3-205ENST00000469550 CHMLP26374 656 aa11.45□□□□□ -0.58
HDAC3-205ENST00000469550 MCM10Q7L590 875 aa11.45□□□□□ -0.58
HDAC3-205ENST00000469550 GTPBP4Q9BZE4 634 aaKnown RBP11.45□□□□□ -0.58
HDAC3-205ENST00000469550 STAP2Q9UGK3 403 aa11.45□□□□□ -0.58
HDAC3-205ENST00000469550 AOX1Q06278 1338 aa11.45□□□□□ -0.58
HDAC3-205ENST00000469550 SCN4AP35499 1836 aa11.45□□□□□ -0.58
HDAC3-205ENST00000469550 PRAMEF22A3QJZ6 481 aa11.45□□□□□ -0.58
HDAC3-205ENST00000469550 NBPF26B4DH59 902 aa11.45□□□□□ -0.58
HDAC3-205ENST00000469550 C21orf2O43822 256 aa11.45□□□□□ -0.58
HDAC3-205ENST00000469550 ZSCAN20P17040 1043 aaPredicted RBP11.45□□□□□ -0.58
HDAC3-205ENST00000469550 FOXD4L5Q5VV16 416 aaPredicted RBP11.45□□□□□ -0.58
HDAC3-205ENST00000469550 PRPF40BQ6NWY9 871 aaKnown RBP11.45□□□□□ -0.58
HDAC3-205ENST00000469550 NBPF10Q6P3W6 841 aaKnown RBP11.45□□□□□ -0.58
HDAC3-205ENST00000469550 NBPF15Q8N660 670 aa11.45□□□□□ -0.58
HDAC3-205ENST00000469550 FOXD4L4Q8WXT5 416 aaPredicted RBP11.45□□□□□ -0.58
HDAC3-205ENST00000469550 TAOK3Q9H2K8 898 aa11.45□□□□□ -0.58
HDAC3-205ENST00000469550 PALD1Q9ULE6 856 aa11.45□□□□□ -0.58
HDAC3-205ENST00000469550 KIF3AQ9Y496 699 aa11.45□□□□□ -0.58
HDAC3-205ENST00000469550 RPAP1Q9BWH6 1393 aaPredicted RBP11.45□□□□□ -0.58
HDAC3-205ENST00000469550 RIC1Q4ADV7 1423 aa11.44□□□□□ -0.58
HDAC3-205ENST00000469550 GADD45BO75293 160 aaPredicted RBP11.44□□□□□ -0.58
HDAC3-205ENST00000469550 ADCY5O95622 1261 aa11.44□□□□□ -0.58
HDAC3-205ENST00000469550 TAF7Q15545 349 aaPredicted RBP11.44□□□□□ -0.58
HDAC3-205ENST00000469550 DPY19L2Q6NUT2 758 aa11.44□□□□□ -0.58
HDAC3-205ENST00000469550 ZNF710Q8N1W2 664 aa11.44□□□□□ -0.58
HDAC3-205ENST00000469550 C7orf43Q8WVR3 580 aa11.44□□□□□ -0.58
HDAC3-205ENST00000469550 NUP98P52948 1817 aa11.44□□□□□ -0.58
HDAC3-205ENST00000469550 APBB1O00213 710 aa11.43□□□□□ -0.58
HDAC3-205ENST00000469550 KDM4AO75164 1064 aa11.43□□□□□ -0.58
HDAC3-205ENST00000469550 GNAI2P04899 355 aa11.43□□□□□ -0.58
HDAC3-205ENST00000469550 UBE2HP62256 183 aa11.43□□□□□ -0.58
HDAC3-205ENST00000469550 DCTN1Q14203 1278 aa11.43□□□□□ -0.58
HDAC3-205ENST00000469550 CCDC24Q8N4L8 307 aa11.43□□□□□ -0.58
HDAC3-205ENST00000469550 LRRCC1Q9C099 1032 aa11.43□□□□□ -0.58
HDAC3-205ENST00000469550 NPR1P16066 1061 aa11.43□□□□□ -0.58
HDAC3-205ENST00000469550 HSPA4P34932 840 aa11.43□□□□□ -0.58
HDAC3-205ENST00000469550 ERFEQ4G0M1 354 aa11.43□□□□□ -0.58
HDAC3-205ENST00000469550 NBPF5PQ86XG9 351 aaPredicted RBP11.43□□□□□ -0.58
HDAC3-205ENST00000469550 DIAPH3Q9NSV4 1193 aa11.43□□□□□ -0.58
HDAC3-205ENST00000469550 USP25Q9UHP3 1055 aa11.43□□□□□ -0.58
HDAC3-205ENST00000469550 HTRA3P83110 453 aa11.42□□□□□ -0.58
HDAC3-205ENST00000469550 KRT24Q2M2I5 525 aa11.42□□□□□ -0.58
HDAC3-205ENST00000469550 FUCA2Q9BTY2 467 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms