RNA–Protein interactions for RNA: ENST00000455554.2

LINC02540-201, Transcript of long intergenic non-protein coding RNA 2540, humanhuman

TSL 3 BASIC

Gene LINC02540, Length 570 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC02540-201ENST00000455554 MUC3BQ9H195 1237 aa5.38□□□□□ -1.55
LINC02540-201ENST00000455554 KCNK4Q9NYG8 393 aa5.38□□□□□ -1.55
LINC02540-201ENST00000455554 LRFN2Q9ULH4 789 aa5.38□□□□□ -1.55
LINC02540-201ENST00000455554 TRIM33Q9UPN9 1127 aa5.38□□□□□ -1.55
LINC02540-201ENST00000455554 FOXO3O43524 673 aa5.37□□□□□ -1.55
LINC02540-201ENST00000455554 MMP20O60882 483 aa5.37□□□□□ -1.55
LINC02540-201ENST00000455554 HOXD8P13378 290 aaPredicted RBP5.37□□□□□ -1.55
LINC02540-201ENST00000455554 FLIIQ13045 1269 aa5.37□□□□□ -1.55
LINC02540-201ENST00000455554 ZDHHC13Q8IUH4 622 aa5.37□□□□□ -1.55
LINC02540-201ENST00000455554 ANKMY2Q8IV38 441 aa5.37□□□□□ -1.55
LINC02540-201ENST00000455554 RGL4Q8IZJ4 473 aa5.37□□□□□ -1.55
LINC02540-201ENST00000455554 CMTR1Q8N1G2 835 aaKnown RBP5.37□□□□□ -1.55
LINC02540-201ENST00000455554 CACTIN-AS1Q8N1I8 211 aa5.37□□□□□ -1.55
LINC02540-201ENST00000455554 COL26A1Q96A83 441 aa5.37□□□□□ -1.55
LINC02540-201ENST00000455554 RNF114Q9Y508 228 aa5.37□□□□□ -1.55
LINC02540-201ENST00000455554 USP17L15C9J2P7 530 aa5.36□□□□□ -1.55
LINC02540-201ENST00000455554 USP17L10C9JJH3 530 aa5.36□□□□□ -1.55
LINC02540-201ENST00000455554 USP17L13C9JLJ4 530 aa5.36□□□□□ -1.55
LINC02540-201ENST00000455554 USP17L12C9JPN9 530 aa5.36□□□□□ -1.55
LINC02540-201ENST00000455554 USP17L11C9JVI0 530 aa5.36□□□□□ -1.55
LINC02540-201ENST00000455554 USP17L21D6R901 530 aa5.36□□□□□ -1.55
LINC02540-201ENST00000455554 USP17L18D6R9N7 530 aa5.36□□□□□ -1.55
LINC02540-201ENST00000455554 USP17L22D6RA61 530 aa5.36□□□□□ -1.55
LINC02540-201ENST00000455554 USP17L17D6RBQ6 530 aa5.36□□□□□ -1.55
LINC02540-201ENST00000455554 USP17L19D6RCP7 530 aa5.36□□□□□ -1.55
LINC02540-201ENST00000455554 USP17L20D6RJB6 530 aa5.36□□□□□ -1.55
LINC02540-201ENST00000455554 SPINK2P20155 84 aa5.36□□□□□ -1.55
LINC02540-201ENST00000455554 WEE1P30291 646 aa5.36□□□□□ -1.55
LINC02540-201ENST00000455554 GRIK1P39086 918 aa5.36□□□□□ -1.55
LINC02540-201ENST00000455554 USP17L24Q0WX57 530 aa5.36□□□□□ -1.55
LINC02540-201ENST00000455554 FAM26DQ5JW98 314 aa5.36□□□□□ -1.55
LINC02540-201ENST00000455554 TXNDC11Q6PKC3 985 aa5.36□□□□□ -1.55
LINC02540-201ENST00000455554 TREML1Q86YW5 311 aa5.36□□□□□ -1.55
LINC02540-201ENST00000455554 GLMNQ92990 594 aa5.36□□□□□ -1.55
LINC02540-201ENST00000455554 CEP41Q9BYV8 373 aa5.36□□□□□ -1.55
LINC02540-201ENST00000455554 PPME1Q9Y570 386 aa5.36□□□□□ -1.55
LINC02540-201ENST00000455554 KCNMB2Q9Y691 235 aa5.36□□□□□ -1.55
LINC02540-201ENST00000455554 PRR19A6NJB7 356 aa5.35□□□□□ -1.55
LINC02540-201ENST00000455554 FAM196BA6NMK8 535 aa5.35□□□□□ -1.55
LINC02540-201ENST00000455554 NFIAQ12857 509 aa5.35□□□□□ -1.55
LINC02540-201ENST00000455554 KANK4Q5T7N3 995 aaPredicted RBP5.35□□□□□ -1.55
LINC02540-201ENST00000455554 COL13A1Q5TAT6 717 aaPredicted RBP5.35□□□□□ -1.55
LINC02540-201ENST00000455554 INTS5Q6P9B9 1019 aaKnown RBP5.35□□□□□ -1.55
LINC02540-201ENST00000455554 UTP3Q9NQZ2 479 aaKnown RBP eCLIP5.35□□□□□ -1.55
LINC02540-201ENST00000455554 UVSSAQ2YD98 709 aa5.34□□□□□ -1.55
LINC02540-201ENST00000455554 ACAD11Q709F0 780 aa5.34□□□□□ -1.55
LINC02540-201ENST00000455554 UTP4Q969X6 686 aaKnown RBP5.34□□□□□ -1.55
LINC02540-201ENST00000455554 C7orf69Q9H7B7 122 aa5.34□□□□□ -1.55
LINC02540-201ENST00000455554 HMX2A2RU54 273 aa5.33□□□□□ -1.56
LINC02540-201ENST00000455554 LINC01387J3KSC0 135 aa5.33□□□□□ -1.56
LINC02540-201ENST00000455554 CD68P34810 354 aaPredicted RBP5.33□□□□□ -1.56
LINC02540-201ENST00000455554 ATP11AP98196 1134 aa5.33□□□□□ -1.56
LINC02540-201ENST00000455554 TRIP4Q15650 581 aaPredicted RBP5.33□□□□□ -1.56
LINC02540-201ENST00000455554 NLRP13Q86W25 1043 aa5.33□□□□□ -1.56
LINC02540-201ENST00000455554 TRIM42Q8IWZ5 723 aa5.33□□□□□ -1.56
LINC02540-201ENST00000455554 DDX3YO15523 660 aaKnown RBP5.32□□□□□ -1.56
LINC02540-201ENST00000455554 CDC25BP30305 580 aa5.32□□□□□ -1.56
LINC02540-201ENST00000455554 HOXA10P31260 410 aaPredicted RBP5.32□□□□□ -1.56
LINC02540-201ENST00000455554 RNF43Q68DV7 783 aa5.32□□□□□ -1.56
LINC02540-201ENST00000455554 DTX1Q86Y01 620 aa5.32□□□□□ -1.56
LINC02540-201ENST00000455554 FAM46AQ96IP4 442 aaKnown RBP5.32□□□□□ -1.56
LINC02540-201ENST00000455554 ARXQ96QS3 562 aa5.32□□□□□ -1.56
LINC02540-201ENST00000455554 DBNDD2Q9BQY9 259 aa5.32□□□□□ -1.56
LINC02540-201ENST00000455554 CARD10Q9BWT7 1032 aa5.32□□□□□ -1.56
LINC02540-201ENST00000455554 PPP1R12CQ9BZL4 782 aa5.32□□□□□ -1.56
LINC02540-201ENST00000455554 VRTNQ9H8Y1 702 aa5.32□□□□□ -1.56
LINC02540-201ENST00000455554 ADAM11O75078 769 aa5.31□□□□□ -1.56
LINC02540-201ENST00000455554 WNT11O96014 354 aa5.31□□□□□ -1.56
LINC02540-201ENST00000455554 COX20Q5RI15 118 aa5.31□□□□□ -1.56
LINC02540-201ENST00000455554 KIAA1211Q6ZU35 1233 aa5.31□□□□□ -1.56
LINC02540-201ENST00000455554 MYRFLQ96LU7 910 aa5.31□□□□□ -1.56
LINC02540-201ENST00000455554 KRTAP4-9Q9BYQ8 210 aa5.31□□□□□ -1.56
LINC02540-201ENST00000455554 LACRTQ9GZZ8 138 aa5.31□□□□□ -1.56
LINC02540-201ENST00000455554 SMNDC1O75940 238 aaKnown RBP eCLIP5.3□□□□□ -1.56
LINC02540-201ENST00000455554 CDC27P30260 824 aa5.3□□□□□ -1.56
LINC02540-201ENST00000455554 HYAL2Q12891 473 aa5.3□□□□□ -1.56
LINC02540-201ENST00000455554 FZD5Q13467 585 aa5.3□□□□□ -1.56
LINC02540-201ENST00000455554 DUOXA2Q1HG44 320 aa5.3□□□□□ -1.56
LINC02540-201ENST00000455554 CEP135Q66GS9 1140 aa5.3□□□□□ -1.56
LINC02540-201ENST00000455554 PROSER2Q86WR7 435 aaPredicted RBP5.3□□□□□ -1.56
LINC02540-201ENST00000455554 ETFBKMTQ8IXQ9 262 aa5.3□□□□□ -1.56
LINC02540-201ENST00000455554 OR13H1Q8NG92 308 aa5.3□□□□□ -1.56
LINC02540-201ENST00000455554 UBASH3BQ8TF42 649 aa5.3□□□□□ -1.56
LINC02540-201ENST00000455554 FOXD4L4Q8WXT5 416 aaPredicted RBP5.3□□□□□ -1.56
LINC02540-201ENST00000455554 SPACA7Q96KW9 195 aa5.3□□□□□ -1.56
LINC02540-201ENST00000455554 ADGRE2Q9UHX3 823 aa5.3□□□□□ -1.56
LINC02540-201ENST00000455554 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP5.3□□□□□ -1.56
LINC02540-201ENST00000455554 FSCN2O14926 492 aa5.29□□□□□ -1.56
LINC02540-201ENST00000455554 LMOD1P29536 600 aaPredicted RBP5.29□□□□□ -1.56
LINC02540-201ENST00000455554 LCE4AQ5TA78 99 aa5.29□□□□□ -1.56
LINC02540-201ENST00000455554 FAM117BQ6P1L5 589 aa5.29□□□□□ -1.56
LINC02540-201ENST00000455554 NFXL1Q6ZNB6 911 aa5.29□□□□□ -1.56
LINC02540-201ENST00000455554 CLEC10AQ8IUN9 316 aa5.29□□□□□ -1.56
LINC02540-201ENST00000455554 SHISA5Q8N114 240 aa5.29□□□□□ -1.56
LINC02540-201ENST00000455554 FNBP4Q8N3X1 1017 aaPredicted RBP5.29□□□□□ -1.56
LINC02540-201ENST00000455554 KLHL23Q8NBE8 558 aa5.29□□□□□ -1.56
LINC02540-201ENST00000455554 SHKBP1Q8TBC3 707 aa5.29□□□□□ -1.56
LINC02540-201ENST00000455554 CALR3Q96L12 384 aaKnown RBP5.29□□□□□ -1.56
LINC02540-201ENST00000455554 SAP130Q9H0E3 1048 aa5.29□□□□□ -1.56
LINC02540-201ENST00000455554 UBAP1LF5GYI3 381 aa5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms