RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 KCPQ6ZWJ8 1503 aa19.46■□□□□ 0.71
CLCNKA-203ENST00000439316 CCDC192P0DO97 292 aa19.46■□□□□ 0.71
CLCNKA-203ENST00000439316 RBM10P98175 930 aaKnown RBP19.46■□□□□ 0.71
CLCNKA-203ENST00000439316 USPL1Q5W0Q7 1092 aa19.46■□□□□ 0.71
CLCNKA-203ENST00000439316 XAGE3Q8WTP9 111 aa19.46■□□□□ 0.71
CLCNKA-203ENST00000439316 COPRSQ9NQ92 184 aa19.46■□□□□ 0.71
CLCNKA-203ENST00000439316 TAF5LO75529 589 aa19.45■□□□□ 0.7
CLCNKA-203ENST00000439316 MYL6BP14649 208 aa19.45■□□□□ 0.7
CLCNKA-203ENST00000439316 VPS72Q15906 364 aa19.45■□□□□ 0.7
CLCNKA-203ENST00000439316 TTC12Q9H892 705 aaPredicted RBP19.45■□□□□ 0.7
CLCNKA-203ENST00000439316 COL15A1P39059 1388 aa19.45■□□□□ 0.7
CLCNKA-203ENST00000439316 AP5Z1O43299 807 aa19.44■□□□□ 0.7
CLCNKA-203ENST00000439316 ATP5JP18859 108 aa19.44■□□□□ 0.7
CLCNKA-203ENST00000439316 NOLC1Q14978 699 aaKnown RBP eCLIP19.44■□□□□ 0.7
CLCNKA-203ENST00000439316 MPNDQ8N594 471 aa19.44■□□□□ 0.7
CLCNKA-203ENST00000439316 TCEANC2Q96MN5 208 aa19.44■□□□□ 0.7
CLCNKA-203ENST00000439316 SPTLC3Q9NUV7 552 aa19.44■□□□□ 0.7
CLCNKA-203ENST00000439316 USP21Q9UK80 565 aa19.44■□□□□ 0.7
CLCNKA-203ENST00000439316 LAMB4A4D0S4 1761 aa19.44■□□□□ 0.7
CLCNKA-203ENST00000439316 RFX5P48382 616 aaPredicted RBP19.44■□□□□ 0.7
CLCNKA-203ENST00000439316 PIP4K2AP48426 406 aaPredicted RBP19.44■□□□□ 0.7
CLCNKA-203ENST00000439316 FAM98CQ17RN3 349 aaKnown RBP19.44■□□□□ 0.7
CLCNKA-203ENST00000439316 FERMT3Q86UX7 667 aa19.44■□□□□ 0.7
CLCNKA-203ENST00000439316 MYD88Q99836 296 aa19.44■□□□□ 0.7
CLCNKA-203ENST00000439316 ASAP1Q9ULH1 1129 aa19.44■□□□□ 0.7
CLCNKA-203ENST00000439316 MEX3CQ5U5Q3 659 aaKnown RBP19.43■□□□□ 0.7
CLCNKA-203ENST00000439316 COPS6Q7L5N1 327 aa19.43■□□□□ 0.7
CLCNKA-203ENST00000439316 LRP10Q7Z4F1 713 aa19.43■□□□□ 0.7
CLCNKA-203ENST00000439316 SYTL4Q96C24 671 aaPredicted RBP19.43■□□□□ 0.7
CLCNKA-203ENST00000439316 FAM13BQ9NYF5 915 aa19.43■□□□□ 0.7
CLCNKA-203ENST00000439316 AFDNP55196 1824 aaKnown RBP19.43■□□□□ 0.7
CLCNKA-203ENST00000439316 KRT32Q14532 448 aa19.43■□□□□ 0.7
CLCNKA-203ENST00000439316 MAP3K11Q16584 847 aa19.43■□□□□ 0.7
CLCNKA-203ENST00000439316 MARCH10Q8NA82 808 aaPredicted RBP19.43■□□□□ 0.7
CLCNKA-203ENST00000439316 SCAND2PQ9GZW5 306 aaPredicted RBP19.43■□□□□ 0.7
CLCNKA-203ENST00000439316 NUP62CLQ9H1M0 184 aa19.43■□□□□ 0.7
CLCNKA-203ENST00000439316 DBNLQ9UJU6 430 aaKnown RBP19.43■□□□□ 0.7
CLCNKA-203ENST00000439316 DOT1LQ8TEK3 1739 aa19.42■□□□□ 0.7
CLCNKA-203ENST00000439316 LIG1P18858 919 aa19.42■□□□□ 0.7
CLCNKA-203ENST00000439316 TNNI3KQ59H18 835 aa19.42■□□□□ 0.7
CLCNKA-203ENST00000439316 MYRIPQ8NFW9 859 aa19.42■□□□□ 0.7
CLCNKA-203ENST00000439316 FAM200AQ8TCP9 573 aa19.42■□□□□ 0.7
CLCNKA-203ENST00000439316 EDC3Q96F86 508 aaKnown RBP19.42■□□□□ 0.7
CLCNKA-203ENST00000439316 PRIMPOLQ96LW4 560 aa19.42■□□□□ 0.7
CLCNKA-203ENST00000439316 FPGT-TNNI3KV9GXZ4 949 aa19.42■□□□□ 0.7
CLCNKA-203ENST00000439316 ARFGEF2Q9Y6D5 1785 aa19.42■□□□□ 0.7
CLCNKA-203ENST00000439316 BCL9O00512 1426 aa19.41■□□□□ 0.7
CLCNKA-203ENST00000439316 PTPN12Q05209 780 aaKnown RBP19.41■□□□□ 0.7
CLCNKA-203ENST00000439316 RABL6Q3YEC7 729 aaPredicted RBP19.41■□□□□ 0.7
CLCNKA-203ENST00000439316 FAM173BQ6P4H8 233 aa19.41■□□□□ 0.7
CLCNKA-203ENST00000439316 ATG3Q9NT62 314 aa19.41■□□□□ 0.7
CLCNKA-203ENST00000439316 ZNF609O15014 1411 aa19.41■□□□□ 0.7
CLCNKA-203ENST00000439316 TPM3P06753 285 aa19.41■□□□□ 0.7
CLCNKA-203ENST00000439316 MTERF4Q7Z6M4 381 aaKnown RBP19.41■□□□□ 0.7
CLCNKA-203ENST00000439316 MRVI1Q9Y6F6 885 aa19.41■□□□□ 0.7
CLCNKA-203ENST00000439316 GTF3C6Q969F1 213 aa19.4■□□□□ 0.7
CLCNKA-203ENST00000439316 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.4■□□□□ 0.7
CLCNKA-203ENST00000439316 TYRO3Q06418 890 aa19.39■□□□□ 0.7
CLCNKA-203ENST00000439316 TFCP2Q12800 502 aa19.39■□□□□ 0.7
CLCNKA-203ENST00000439316 DNTTIP2Q5QJE6 756 aaKnown RBP19.39■□□□□ 0.7
CLCNKA-203ENST00000439316 RBM43Q6ZSC3 357 aaKnown RBP19.39■□□□□ 0.7
CLCNKA-203ENST00000439316 ANKRD13DQ6ZTN6 518 aa19.39■□□□□ 0.7
CLCNKA-203ENST00000439316 LEO1Q8WVC0 666 aaPredicted RBP19.39■□□□□ 0.7
CLCNKA-203ENST00000439316 C17orf53Q8N3J3 647 aaPredicted RBP19.39■□□□□ 0.69
CLCNKA-203ENST00000439316 SPATA32Q96LK8 384 aa19.39■□□□□ 0.69
CLCNKA-203ENST00000439316 KCNF1Q9H3M0 494 aa19.39■□□□□ 0.69
CLCNKA-203ENST00000439316 DDX19AQ9NUU7 478 aaKnown RBP19.39■□□□□ 0.69
CLCNKA-203ENST00000439316 U3KPZ7 1027 aaPredicted RBP19.39■□□□□ 0.69
CLCNKA-203ENST00000439316 HMGN5P82970 282 aaKnown RBP19.38■□□□□ 0.69
CLCNKA-203ENST00000439316 PLCB2Q00722 1185 aa19.38■□□□□ 0.69
CLCNKA-203ENST00000439316 STK3Q13188 491 aa19.38■□□□□ 0.69
CLCNKA-203ENST00000439316 NEK1Q96PY6 1258 aa19.38■□□□□ 0.69
CLCNKA-203ENST00000439316 NBPF26B4DH59 902 aa19.37■□□□□ 0.69
CLCNKA-203ENST00000439316 NBPF14Q5TI25 921 aa19.37■□□□□ 0.69
CLCNKA-203ENST00000439316 NBPF10Q6P3W6 841 aaKnown RBP19.37■□□□□ 0.69
CLCNKA-203ENST00000439316 NBPF15Q8N660 670 aa19.37■□□□□ 0.69
CLCNKA-203ENST00000439316 KIAA1524Q8TCG1 905 aa19.37■□□□□ 0.69
CLCNKA-203ENST00000439316 ACSBG1Q96GR2 724 aa19.37■□□□□ 0.69
CLCNKA-203ENST00000439316 HAUS7Q99871 368 aa19.37■□□□□ 0.69
CLCNKA-203ENST00000439316 CLSTN2Q9H4D0 955 aa19.37■□□□□ 0.69
CLCNKA-203ENST00000439316 DACT1Q9NYF0 836 aa19.37■□□□□ 0.69
CLCNKA-203ENST00000439316 A0A0G2JS52 829 aa19.37■□□□□ 0.69
CLCNKA-203ENST00000439316 A1BGP04217 495 aa19.37■□□□□ 0.69
CLCNKA-203ENST00000439316 GTF2F1P35269 517 aaKnown RBP eCLIP19.37■□□□□ 0.69
CLCNKA-203ENST00000439316 RESTQ13127 1097 aa19.37■□□□□ 0.69
CLCNKA-203ENST00000439316 VSIG10Q8N0Z9 540 aa19.37■□□□□ 0.69
CLCNKA-203ENST00000439316 TNMDQ9H2S6 317 aa19.37■□□□□ 0.69
CLCNKA-203ENST00000439316 AFF2P51816 1311 aa19.36■□□□□ 0.69
CLCNKA-203ENST00000439316 GOLGA6L6A8MZA4 724 aa19.36■□□□□ 0.69
CLCNKA-203ENST00000439316 JAK2O60674 1132 aa19.36■□□□□ 0.69
CLCNKA-203ENST00000439316 CAMK4Q16566 473 aa19.36■□□□□ 0.69
CLCNKA-203ENST00000439316 UBE3BQ7Z3V4 1068 aa19.36■□□□□ 0.69
CLCNKA-203ENST00000439316 DBNDD2Q9BQY9 259 aa19.36■□□□□ 0.69
CLCNKA-203ENST00000439316 CHMP3Q9Y3E7 222 aa19.36■□□□□ 0.69
CLCNKA-203ENST00000439316 GOLGA6L4A6NEF3 574 aa19.35■□□□□ 0.69
CLCNKA-203ENST00000439316 CASP7P55210 303 aa19.35■□□□□ 0.69
CLCNKA-203ENST00000439316 MCMDC2Q4G0Z9 681 aa19.35■□□□□ 0.69
CLCNKA-203ENST00000439316 JARID2Q92833 1246 aaPredicted RBP19.35■□□□□ 0.69
CLCNKA-203ENST00000439316 TFIP11Q9UBB9 837 aaKnown RBP19.35■□□□□ 0.69
CLCNKA-203ENST00000439316 CYP21A2P08686 494 aa19.35■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms