RNA–Protein interactions for RNA: ENST00000438581.6

TMEM39A-202, Transcript of transmembrane protein 39A, humanhuman

TSL 1 (best)

Gene TMEM39A, Length 4,393 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-202ENST00000438581 MICU3Q86XE3 530 aa9.49□□□□□ -0.89
TMEM39A-202ENST00000438581 TNPO1Q92973 898 aaKnown RBP9.49□□□□□ -0.89
TMEM39A-202ENST00000438581 SH2B1Q9NRF2 756 aaPredicted RBP9.49□□□□□ -0.89
TMEM39A-202ENST00000438581 TAF5LO75529 589 aa9.49□□□□□ -0.89
TMEM39A-202ENST00000438581 TCIRG1Q13488 830 aa9.49□□□□□ -0.89
TMEM39A-202ENST00000438581 CHST3Q7LGC8 479 aa9.49□□□□□ -0.89
TMEM39A-202ENST00000438581 CRACR2BQ8N4Y2 399 aaPredicted RBP9.49□□□□□ -0.89
TMEM39A-202ENST00000438581 PTPRMP28827 1452 aa9.49□□□□□ -0.89
TMEM39A-202ENST00000438581 ADAMTS13Q76LX8 1427 aa9.49□□□□□ -0.89
TMEM39A-202ENST00000438581 NEFHP12036 1026 aa9.49□□□□□ -0.89
TMEM39A-202ENST00000438581 CPA1P15085 419 aa9.49□□□□□ -0.89
TMEM39A-202ENST00000438581 TNNI3KQ59H18 835 aa9.49□□□□□ -0.89
TMEM39A-202ENST00000438581 IQCA1Q86XH1 822 aa9.49□□□□□ -0.89
TMEM39A-202ENST00000438581 MIGA1Q8NAN2 632 aa9.49□□□□□ -0.89
TMEM39A-202ENST00000438581 TMOD2Q9NZR1 351 aa9.49□□□□□ -0.89
TMEM39A-202ENST00000438581 TFIP11Q9UBB9 837 aaKnown RBP9.49□□□□□ -0.89
TMEM39A-202ENST00000438581 FPGT-TNNI3KV9GXZ4 949 aa9.49□□□□□ -0.89
TMEM39A-202ENST00000438581 AGLP35573 1532 aa9.49□□□□□ -0.89
TMEM39A-202ENST00000438581 ZNF444Q8N0Y2 327 aaPredicted RBP9.48□□□□□ -0.89
TMEM39A-202ENST00000438581 CCDC47Q96A33 483 aaKnown RBP9.48□□□□□ -0.89
TMEM39A-202ENST00000438581 EDC3Q96F86 508 aaKnown RBP9.48□□□□□ -0.89
TMEM39A-202ENST00000438581 NYXQ9GZU5 481 aa9.48□□□□□ -0.89
TMEM39A-202ENST00000438581 PIK3C2BO00750 1634 aa9.48□□□□□ -0.89
TMEM39A-202ENST00000438581 ARHGEF40Q8TER5 1519 aa9.48□□□□□ -0.89
TMEM39A-202ENST00000438581 MRE11P49959 708 aa9.48□□□□□ -0.89
TMEM39A-202ENST00000438581 TMCO4Q5TGY1 634 aa9.48□□□□□ -0.89
TMEM39A-202ENST00000438581 SLC12A7Q9Y666 1083 aa9.48□□□□□ -0.89
TMEM39A-202ENST00000438581 CCDC129Q6ZRS4 1044 aa9.48□□□□□ -0.89
TMEM39A-202ENST00000438581 ZBTB1Q9Y2K1 713 aa9.48□□□□□ -0.89
TMEM39A-202ENST00000438581 PDE8AO60658 829 aa9.47□□□□□ -0.89
TMEM39A-202ENST00000438581 ZFYP08048 801 aaPredicted RBP9.47□□□□□ -0.89
TMEM39A-202ENST00000438581 GJB2P29033 226 aa9.47□□□□□ -0.89
TMEM39A-202ENST00000438581 TMEM67Q5HYA8 995 aa9.47□□□□□ -0.89
TMEM39A-202ENST00000438581 SOGA3Q5TF21 947 aa9.47□□□□□ -0.89
TMEM39A-202ENST00000438581 C8orf76Q96K31 380 aa9.47□□□□□ -0.89
TMEM39A-202ENST00000438581 SETBP1Q9Y6X0 1596 aa9.47□□□□□ -0.89
TMEM39A-202ENST00000438581 LOC102724428A0A0B4J2F2 783 aa9.47□□□□□ -0.89
TMEM39A-202ENST00000438581 SIK1P57059 783 aa9.47□□□□□ -0.89
TMEM39A-202ENST00000438581 NAA16Q6N069 864 aaPredicted RBP9.47□□□□□ -0.89
TMEM39A-202ENST00000438581 MFSD6Q6ZSS7 791 aa9.47□□□□□ -0.89
TMEM39A-202ENST00000438581 JMYQ8N9B5 988 aa9.47□□□□□ -0.89
TMEM39A-202ENST00000438581 PCMTD1Q96MG8 357 aaPredicted RBP9.47□□□□□ -0.89
TMEM39A-202ENST00000438581 SLC4A4Q9Y6R1 1079 aa9.47□□□□□ -0.89
TMEM39A-202ENST00000438581 RIMBP2O15034 1052 aa9.47□□□□□ -0.89
TMEM39A-202ENST00000438581 LDHCP07864 332 aa9.47□□□□□ -0.89
TMEM39A-202ENST00000438581 PARP10Q53GL7 1025 aa9.47□□□□□ -0.89
TMEM39A-202ENST00000438581 TMED8Q6PL24 325 aaPredicted RBP9.47□□□□□ -0.89
TMEM39A-202ENST00000438581 CNBD1Q8NA66 436 aa9.47□□□□□ -0.89
TMEM39A-202ENST00000438581 NCOA7Q8NI08 942 aa9.47□□□□□ -0.89
TMEM39A-202ENST00000438581 SSH3Q8TE77 659 aa9.47□□□□□ -0.89
TMEM39A-202ENST00000438581 CCDC43Q96MW1 224 aaKnown RBP9.47□□□□□ -0.89
TMEM39A-202ENST00000438581 RNF41Q9H4P4 317 aaPredicted RBP9.47□□□□□ -0.89
TMEM39A-202ENST00000438581 GEMIN8Q9NWZ8 242 aaKnown RBP9.47□□□□□ -0.89
TMEM39A-202ENST00000438581 KIF24Q5T7B8 1368 aa9.47□□□□□ -0.89
TMEM39A-202ENST00000438581 GOLGA8AA7E2F4 631 aa9.47□□□□□ -0.89
TMEM39A-202ENST00000438581 DTNBO60941 627 aa9.47□□□□□ -0.89
TMEM39A-202ENST00000438581 CTCFLQ8NI51 663 aaPredicted RBP9.47□□□□□ -0.89
TMEM39A-202ENST00000438581 FAM227BQ96M60 508 aa9.47□□□□□ -0.89
TMEM39A-202ENST00000438581 USP26Q9BXU7 913 aa9.47□□□□□ -0.89
TMEM39A-202ENST00000438581 TNMDQ9H2S6 317 aa9.47□□□□□ -0.89
TMEM39A-202ENST00000438581 CFAP45Q9UL16 551 aa9.47□□□□□ -0.89
TMEM39A-202ENST00000438581 TSPY2A6NKD2 308 aa9.46□□□□□ -0.89
TMEM39A-202ENST00000438581 XAGE2Q96GT9 111 aa9.46□□□□□ -0.89
TMEM39A-202ENST00000438581 HMG20BQ9P0W2 317 aa9.46□□□□□ -0.89
TMEM39A-202ENST00000438581 PRDM4Q9UKN5 801 aa9.46□□□□□ -0.89
TMEM39A-202ENST00000438581 RNF113AO15541 343 aaKnown RBP9.46□□□□□ -0.9
TMEM39A-202ENST00000438581 BAG3O95817 575 aa9.46□□□□□ -0.9
TMEM39A-202ENST00000438581 TERF1P54274 439 aa9.46□□□□□ -0.9
TMEM39A-202ENST00000438581 MAGEB6Q8N7X4 407 aa9.46□□□□□ -0.9
TMEM39A-202ENST00000438581 ZC3H12CQ9C0D7 883 aaKnown RBP9.46□□□□□ -0.9
TMEM39A-202ENST00000438581 TSPY26PQ9H489 355 aa9.46□□□□□ -0.9
TMEM39A-202ENST00000438581 PIGBQ92521 554 aa9.46□□□□□ -0.9
TMEM39A-202ENST00000438581 EAF2Q96CJ1 260 aaPredicted RBP9.46□□□□□ -0.9
TMEM39A-202ENST00000438581 TRIM5Q9C035 493 aa9.46□□□□□ -0.9
TMEM39A-202ENST00000438581 CPSF1Q10570 1443 aaKnown RBP9.45□□□□□ -0.9
TMEM39A-202ENST00000438581 KLF18A0A0U1RQI7 1052 aa9.45□□□□□ -0.9
TMEM39A-202ENST00000438581 CTR9Q6PD62 1173 aa9.45□□□□□ -0.9
TMEM39A-202ENST00000438581 QTRT2Q9H974 415 aaKnown RBP9.45□□□□□ -0.9
TMEM39A-202ENST00000438581 ZNF287Q9HBT7 754 aa9.45□□□□□ -0.9
TMEM39A-202ENST00000438581 ORC3Q9UBD5 711 aaPredicted RBP9.45□□□□□ -0.9
TMEM39A-202ENST00000438581 STX8Q9UNK0 236 aa9.45□□□□□ -0.9
TMEM39A-202ENST00000438581 STX6O43752 255 aa9.45□□□□□ -0.9
TMEM39A-202ENST00000438581 MCM5P33992 734 aa9.45□□□□□ -0.9
TMEM39A-202ENST00000438581 CAMK4Q16566 473 aa9.45□□□□□ -0.9
TMEM39A-202ENST00000438581 TSR1Q2NL82 804 aaKnown RBP9.45□□□□□ -0.9
TMEM39A-202ENST00000438581 CREB3L3Q68CJ9 461 aa9.45□□□□□ -0.9
TMEM39A-202ENST00000438581 OLFM4Q6UX06 510 aa9.45□□□□□ -0.9
TMEM39A-202ENST00000438581 SPTY2D1Q68D10 685 aaPredicted RBP9.45□□□□□ -0.9
TMEM39A-202ENST00000438581 ANKRD20A12PQ8NF67 263 aa9.45□□□□□ -0.9
TMEM39A-202ENST00000438581 CCDC196A0A1B0GTZ2 297 aa9.45□□□□□ -0.9
TMEM39A-202ENST00000438581 SYCE3A1L190 88 aa9.45□□□□□ -0.9
TMEM39A-202ENST00000438581 APBA3O96018 575 aa9.45□□□□□ -0.9
TMEM39A-202ENST00000438581 Q6ZUG5 572 aa9.45□□□□□ -0.9
TMEM39A-202ENST00000438581 PARP3Q9Y6F1 533 aa9.45□□□□□ -0.9
TMEM39A-202ENST00000438581 MRVI1Q9Y6F6 885 aa9.45□□□□□ -0.9
TMEM39A-202ENST00000438581 ZGPATQ8N5A5 531 aaKnown RBP9.44□□□□□ -0.9
TMEM39A-202ENST00000438581 CRNKL1Q9BZJ0 848 aaKnown RBP9.44□□□□□ -0.9
TMEM39A-202ENST00000438581 VAT1LQ9HCJ6 419 aa9.44□□□□□ -0.9
TMEM39A-202ENST00000438581 KDRP35968 1356 aa9.44□□□□□ -0.9
TMEM39A-202ENST00000438581 TPM1P09493 284 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms