RNA–Protein interactions for RNA: ENST00000393452.7

TDP1-202, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best) BASIC

Gene TDP1, Length 2,370 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-202ENST00000393452 ARXQ96QS3 562 aa10.81□□□□□ -0.68
TDP1-202ENST00000393452 SEC62Q99442 399 aaKnown RBP10.81□□□□□ -0.68
TDP1-202ENST00000393452 TPCN1Q9ULQ1 816 aa10.81□□□□□ -0.68
TDP1-202ENST00000393452 AKAP2Q9Y2D5 859 aa10.81□□□□□ -0.68
TDP1-202ENST00000393452 MBD3O95983 291 aa10.81□□□□□ -0.68
TDP1-202ENST00000393452 ZSCAN22P10073 491 aaPredicted RBP10.81□□□□□ -0.68
TDP1-202ENST00000393452 PIP4K2BP78356 416 aa10.81□□□□□ -0.68
TDP1-202ENST00000393452 TOB2Q14106 344 aaPredicted RBP10.81□□□□□ -0.68
TDP1-202ENST00000393452 ZSCAN23Q3MJ62 389 aa10.81□□□□□ -0.68
TDP1-202ENST00000393452 CCDC83Q8IWF9 413 aa10.81□□□□□ -0.68
TDP1-202ENST00000393452 TMEM87AQ8NBN3 555 aa10.81□□□□□ -0.68
TDP1-202ENST00000393452 TTLL11Q8NHH1 800 aa10.81□□□□□ -0.68
TDP1-202ENST00000393452 NWD2Q9ULI1 1742 aa10.8□□□□□ -0.68
TDP1-202ENST00000393452 IFIT1P09914 478 aaKnown RBP10.8□□□□□ -0.68
TDP1-202ENST00000393452 CCDC129Q6ZRS4 1044 aa10.8□□□□□ -0.68
TDP1-202ENST00000393452 SYNE4Q8N205 404 aa10.8□□□□□ -0.68
TDP1-202ENST00000393452 SYTL4Q96C24 671 aaPredicted RBP10.8□□□□□ -0.68
TDP1-202ENST00000393452 DSCC1Q9BVC3 393 aa10.8□□□□□ -0.68
TDP1-202ENST00000393452 RIPOR2Q9Y4F9 1068 aa10.8□□□□□ -0.68
TDP1-202ENST00000393452 RREB1Q92766 1687 aa10.8□□□□□ -0.68
TDP1-202ENST00000393452 RIC1Q4ADV7 1423 aa10.8□□□□□ -0.68
TDP1-202ENST00000393452 ABCC12Q96J65 1359 aa10.8□□□□□ -0.68
TDP1-202ENST00000393452 CYP21A2P08686 494 aa10.8□□□□□ -0.68
TDP1-202ENST00000393452 PDIA4P13667 645 aaKnown RBP10.8□□□□□ -0.68
TDP1-202ENST00000393452 GPTP24298 496 aa10.8□□□□□ -0.68
TDP1-202ENST00000393452 ZNF34Q8IZ26 560 aa10.8□□□□□ -0.68
TDP1-202ENST00000393452 CCDC9Q9Y3X0 531 aaKnown RBP10.8□□□□□ -0.68
TDP1-202ENST00000393452 LAMA4Q16363 1823 aa10.79□□□□□ -0.68
TDP1-202ENST00000393452 AKAP11Q9UKA4 1901 aa10.79□□□□□ -0.68
TDP1-202ENST00000393452 GJB2P29033 226 aa10.79□□□□□ -0.68
TDP1-202ENST00000393452 EIF5P55010 431 aaKnown RBP10.79□□□□□ -0.68
TDP1-202ENST00000393452 CTSWP56202 376 aa10.79□□□□□ -0.68
TDP1-202ENST00000393452 DDB1Q16531 1140 aa10.79□□□□□ -0.68
TDP1-202ENST00000393452 DZIP3Q86Y13 1208 aaKnown RBP10.79□□□□□ -0.68
TDP1-202ENST00000393452 XAGE2Q96GT9 111 aa10.79□□□□□ -0.68
TDP1-202ENST00000393452 TMEM63CQ9P1W3 806 aa10.79□□□□□ -0.68
TDP1-202ENST00000393452 NSFL1CQ9UNZ2 370 aaKnown RBP10.79□□□□□ -0.68
TDP1-202ENST00000393452 SPATA31A5Q5VU36 1347 aa10.79□□□□□ -0.68
TDP1-202ENST00000393452 SPATA31A7Q8IWB4 1347 aa10.79□□□□□ -0.68
TDP1-202ENST00000393452 MYH14Q7Z406 1995 aaKnown RBP10.79□□□□□ -0.68
TDP1-202ENST00000393452 RNF113AO15541 343 aaKnown RBP10.79□□□□□ -0.68
TDP1-202ENST00000393452 ADAMTS2O95450 1211 aa10.79□□□□□ -0.68
TDP1-202ENST00000393452 F13A1P00488 732 aa10.79□□□□□ -0.68
TDP1-202ENST00000393452 NCLP19338 710 aaKnown RBP10.79□□□□□ -0.68
TDP1-202ENST00000393452 ITGA6P23229 1130 aa10.79□□□□□ -0.68
TDP1-202ENST00000393452 ADORA1P30542 326 aa10.79□□□□□ -0.68
TDP1-202ENST00000393452 CCDC158Q5M9N0 1113 aa10.79□□□□□ -0.68
TDP1-202ENST00000393452 NEK1Q96PY6 1258 aa10.79□□□□□ -0.68
TDP1-202ENST00000393452 GREM2Q9H772 168 aa10.79□□□□□ -0.68
TDP1-202ENST00000393452 MTMR6Q9Y217 621 aa10.79□□□□□ -0.68
TDP1-202ENST00000393452 MYH7P12883 1935 aa10.78□□□□□ -0.68
TDP1-202ENST00000393452 UBN2Q6ZU65 1347 aa10.78□□□□□ -0.68
TDP1-202ENST00000393452 SLIT2O94813 1529 aa10.78□□□□□ -0.68
TDP1-202ENST00000393452 IRS4O14654 1257 aaPredicted RBP10.78□□□□□ -0.68
TDP1-202ENST00000393452 PDE8AO60658 829 aa10.78□□□□□ -0.68
TDP1-202ENST00000393452 TAF7LQ5H9L4 462 aa10.78□□□□□ -0.68
TDP1-202ENST00000393452 INTS5Q6P9B9 1019 aaKnown RBP10.78□□□□□ -0.68
TDP1-202ENST00000393452 BARGINQ6ZT62 677 aa10.78□□□□□ -0.68
TDP1-202ENST00000393452 NECAB1Q8N987 351 aa10.78□□□□□ -0.68
TDP1-202ENST00000393452 LRP5O75197 1615 aa10.78□□□□□ -0.68
TDP1-202ENST00000393452 MAST3O60307 1309 aa10.78□□□□□ -0.68
TDP1-202ENST00000393452 SLFNL1Q499Z3 407 aa10.77□□□□□ -0.68
TDP1-202ENST00000393452 VGLL2Q8N8G2 317 aa10.77□□□□□ -0.68
TDP1-202ENST00000393452 MARCH10Q8NA82 808 aaPredicted RBP10.77□□□□□ -0.68
TDP1-202ENST00000393452 TCEANC2Q96MN5 208 aa10.77□□□□□ -0.68
TDP1-202ENST00000393452 CCDC85AQ96PX6 553 aaPredicted RBP10.77□□□□□ -0.68
TDP1-202ENST00000393452 TRMT112Q9UI30 125 aaKnown RBP10.77□□□□□ -0.68
TDP1-202ENST00000393452 TBC1D2BQ9UPU7 963 aa10.77□□□□□ -0.68
TDP1-202ENST00000393452 ATP6V1DQ9Y5K8 247 aa10.77□□□□□ -0.68
TDP1-202ENST00000393452 ANKRD18BA2A2Z9 1011 aa10.77□□□□□ -0.69
TDP1-202ENST00000393452 HSPD1P10809 573 aaKnown RBP10.77□□□□□ -0.69
TDP1-202ENST00000393452 LRRFIP1Q32MZ4 808 aaKnown RBP10.77□□□□□ -0.69
TDP1-202ENST00000393452 TTC39AQ5SRH9 613 aa10.77□□□□□ -0.69
TDP1-202ENST00000393452 LDHAL6AQ6ZMR3 332 aa10.77□□□□□ -0.69
TDP1-202ENST00000393452 USP48Q86UV5 1035 aa10.77□□□□□ -0.69
TDP1-202ENST00000393452 ZNF512BQ96KM6 892 aaPredicted RBP10.77□□□□□ -0.69
TDP1-202ENST00000393452 AK7Q96M32 723 aa10.77□□□□□ -0.69
TDP1-202ENST00000393452 CCDC87Q9NVE4 849 aa10.77□□□□□ -0.69
TDP1-202ENST00000393452 RBM27Q9P2N5 1060 aaKnown RBP10.77□□□□□ -0.69
TDP1-202ENST00000393452 UBAP1LF5GYI3 381 aa10.76□□□□□ -0.69
TDP1-202ENST00000393452 ZFYP08048 801 aaPredicted RBP10.76□□□□□ -0.69
TDP1-202ENST00000393452 HMGB1P09429 215 aaKnown RBP10.76□□□□□ -0.69
TDP1-202ENST00000393452 ATP2B3Q16720 1220 aa10.76□□□□□ -0.69
TDP1-202ENST00000393452 STOX1Q6ZVD7 989 aa10.76□□□□□ -0.69
TDP1-202ENST00000393452 FAM43AQ8N2R8 423 aa10.76□□□□□ -0.69
TDP1-202ENST00000393452 LOC102724428A0A0B4J2F2 783 aa10.76□□□□□ -0.69
TDP1-202ENST00000393452 SIK1P57059 783 aa10.76□□□□□ -0.69
TDP1-202ENST00000393452 FKBP4Q02790 459 aaKnown RBP eCLIP10.76□□□□□ -0.69
TDP1-202ENST00000393452 SCARF1Q14162 830 aa10.76□□□□□ -0.69
TDP1-202ENST00000393452 METTL24Q5JXM2 366 aa10.76□□□□□ -0.69
TDP1-202ENST00000393452 GORABQ5T7V8 394 aa10.76□□□□□ -0.69
TDP1-202ENST00000393452 OSBP2Q969R2 916 aa10.76□□□□□ -0.69
TDP1-202ENST00000393452 GDPD2Q9HCC8 539 aa10.76□□□□□ -0.69
TDP1-202ENST00000393452 PDCP20941 246 aa10.75□□□□□ -0.69
TDP1-202ENST00000393452 CRKLP46109 303 aaKnown RBP10.75□□□□□ -0.69
TDP1-202ENST00000393452 AGXT2Q9BYV1 514 aa10.75□□□□□ -0.69
TDP1-202ENST00000393452 CNPY2Q9Y2B0 182 aa10.75□□□□□ -0.69
TDP1-202ENST00000393452 ZNF831Q5JPB2 1677 aa10.75□□□□□ -0.69
TDP1-202ENST00000393452 M0R2C6 588 aa10.75□□□□□ -0.69
TDP1-202ENST00000393452 GADD45BO75293 160 aaPredicted RBP10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms