RNA–Protein interactions for RNA: ENST00000368020.5

USF1-202, Transcript of upstream transcription factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USF1, Length 1,717 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-202ENST00000368020 PTH1RQ03431 593 aa16.79■□□□□ 0.28
USF1-202ENST00000368020 LRRFIP1Q32MZ4 808 aaKnown RBP16.79■□□□□ 0.28
USF1-202ENST00000368020 TSGA10IPQ3SY00 556 aa16.79■□□□□ 0.28
USF1-202ENST00000368020 PRPF40BQ6NWY9 871 aaKnown RBP16.79■□□□□ 0.28
USF1-202ENST00000368020 RUFY3Q7L099 469 aa16.79■□□□□ 0.28
USF1-202ENST00000368020 RASEFQ8IZ41 740 aa16.79■□□□□ 0.28
USF1-202ENST00000368020 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.79■□□□□ 0.28
USF1-202ENST00000368020 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.79■□□□□ 0.28
USF1-202ENST00000368020 RPS6KA4O75676 772 aa16.78■□□□□ 0.28
USF1-202ENST00000368020 SF3B2Q13435 895 aaKnown RBP16.78■□□□□ 0.28
USF1-202ENST00000368020 CREB3L3Q68CJ9 461 aa16.78■□□□□ 0.28
USF1-202ENST00000368020 JAKMIP1Q96N16 626 aaKnown RBP16.78■□□□□ 0.28
USF1-202ENST00000368020 ALDH8A1Q9H2A2 487 aaPredicted RBP16.78■□□□□ 0.28
USF1-202ENST00000368020 PDRG1Q9NUG6 133 aa16.78■□□□□ 0.28
USF1-202ENST00000368020 AKAP2Q9Y2D5 859 aa16.78■□□□□ 0.28
USF1-202ENST00000368020 MAP3K15Q6ZN16 1313 aa16.78■□□□□ 0.28
USF1-202ENST00000368020 RPAP1Q9BWH6 1393 aaPredicted RBP16.78■□□□□ 0.28
USF1-202ENST00000368020 ZNF609O15014 1411 aa16.78■□□□□ 0.28
USF1-202ENST00000368020 C4BP0C0L5 1744 aa16.77■□□□□ 0.28
USF1-202ENST00000368020 CDHR2Q9BYE9 1310 aa16.77■□□□□ 0.28
USF1-202ENST00000368020 MBD3O95983 291 aa16.77■□□□□ 0.28
USF1-202ENST00000368020 CCDC57Q2TAC2 916 aa16.77■□□□□ 0.28
USF1-202ENST00000368020 ATG9AQ7Z3C6 839 aa16.77■□□□□ 0.28
USF1-202ENST00000368020 FAM227BQ96M60 508 aa16.77■□□□□ 0.28
USF1-202ENST00000368020 ZDHHC9Q9Y397 364 aa16.77■□□□□ 0.28
USF1-202ENST00000368020 A0A0D9SFI3 127 aa16.76■□□□□ 0.27
USF1-202ENST00000368020 ERVV-1B6SEH8 477 aa16.76■□□□□ 0.27
USF1-202ENST00000368020 RGL2O15211 777 aa16.76■□□□□ 0.27
USF1-202ENST00000368020 PKP1Q13835 747 aa16.76■□□□□ 0.27
USF1-202ENST00000368020 GIGYF2Q6Y7W6 1299 aaKnown RBP16.76■□□□□ 0.27
USF1-202ENST00000368020 ZBTB38Q8NAP3 1195 aaPredicted RBP16.76■□□□□ 0.27
USF1-202ENST00000368020 JARID2Q92833 1246 aaPredicted RBP16.76■□□□□ 0.27
USF1-202ENST00000368020 CAMKK2Q96RR4 588 aa16.76■□□□□ 0.27
USF1-202ENST00000368020 LMBRD1Q9NUN5 540 aa16.76■□□□□ 0.27
USF1-202ENST00000368020 ATP6V1DQ9Y5K8 247 aa16.76■□□□□ 0.27
USF1-202ENST00000368020 ABCC12Q96J65 1359 aa16.76■□□□□ 0.27
USF1-202ENST00000368020 SH3TC1Q8TE82 1336 aa16.76■□□□□ 0.27
USF1-202ENST00000368020 BAG6P46379 1132 aa16.76■□□□□ 0.27
USF1-202ENST00000368020 USPL1Q5W0Q7 1092 aa16.76■□□□□ 0.27
USF1-202ENST00000368020 KBTBD3Q8NAB2 608 aa16.76■□□□□ 0.27
USF1-202ENST00000368020 DBNDD2Q9BQY9 259 aa16.76■□□□□ 0.27
USF1-202ENST00000368020 U3KPZ7 1027 aaPredicted RBP16.76■□□□□ 0.27
USF1-202ENST00000368020 SLC27A2O14975 620 aa16.75■□□□□ 0.27
USF1-202ENST00000368020 ADRA2BP18089 450 aa16.75■□□□□ 0.27
USF1-202ENST00000368020 NOL8Q76FK4 1167 aaKnown RBP16.75■□□□□ 0.27
USF1-202ENST00000368020 GRPEL1Q9HAV7 217 aa16.75■□□□□ 0.27
USF1-202ENST00000368020 CEP126Q9P2H0 1117 aa16.75■□□□□ 0.27
USF1-202ENST00000368020 RTCBQ9Y3I0 505 aaKnown RBP16.75■□□□□ 0.27
USF1-202ENST00000368020 NUP98P52948 1817 aa16.75■□□□□ 0.27
USF1-202ENST00000368020 MCMDC2Q4G0Z9 681 aa16.74■□□□□ 0.27
USF1-202ENST00000368020 BLOC1S2Q6QNY1 142 aa16.74■□□□□ 0.27
USF1-202ENST00000368020 HELLSQ9NRZ9 838 aa16.74■□□□□ 0.27
USF1-202ENST00000368020 SMC3Q9UQE7 1217 aa16.74■□□□□ 0.27
USF1-202ENST00000368020 ZNF330Q9Y3S2 320 aaPredicted RBP16.74■□□□□ 0.27
USF1-202ENST00000368020 GNPATO15228 680 aa16.73■□□□□ 0.27
USF1-202ENST00000368020 TAF5LO75529 589 aa16.73■□□□□ 0.27
USF1-202ENST00000368020 DZIP3Q86Y13 1208 aaKnown RBP16.73■□□□□ 0.27
USF1-202ENST00000368020 AK7Q96M32 723 aa16.73■□□□□ 0.27
USF1-202ENST00000368020 DNAJC2Q99543 621 aaKnown RBP16.73■□□□□ 0.27
USF1-202ENST00000368020 CSF1RP07333 972 aa16.73■□□□□ 0.27
USF1-202ENST00000368020 XRCC6P12956 609 aaKnown RBP eCLIP16.73■□□□□ 0.27
USF1-202ENST00000368020 ZNF445P59923 1031 aa16.73■□□□□ 0.27
USF1-202ENST00000368020 IFIT5Q13325 482 aaKnown RBP16.73■□□□□ 0.27
USF1-202ENST00000368020 NEUROD6Q96NK8 337 aa16.73■□□□□ 0.27
USF1-202ENST00000368020 PAG1Q9NWQ8 432 aa16.73■□□□□ 0.27
USF1-202ENST00000368020 BRPF3Q9ULD4 1205 aa16.73■□□□□ 0.27
USF1-202ENST00000368020 NCLP19338 710 aaKnown RBP16.72■□□□□ 0.27
USF1-202ENST00000368020 EN1Q05925 392 aaPredicted RBP16.72■□□□□ 0.27
USF1-202ENST00000368020 SYAP1Q96A49 352 aaPredicted RBP16.72■□□□□ 0.27
USF1-202ENST00000368020 UBR3Q6ZT12 1888 aa16.72■□□□□ 0.27
USF1-202ENST00000368020 HMGB1P09429 215 aaKnown RBP16.71■□□□□ 0.27
USF1-202ENST00000368020 CSPP1Q1MSJ5 1256 aa16.71■□□□□ 0.27
USF1-202ENST00000368020 ADCK5Q3MIX3 580 aa16.71■□□□□ 0.27
USF1-202ENST00000368020 TAF7LQ5H9L4 462 aa16.71■□□□□ 0.27
USF1-202ENST00000368020 CCDC158Q5M9N0 1113 aa16.71■□□□□ 0.27
USF1-202ENST00000368020 CLEC4GQ6UXB4 293 aa16.71■□□□□ 0.27
USF1-202ENST00000368020 A0A1B0GUL7 405 aa16.7■□□□□ 0.26
USF1-202ENST00000368020 PRPF40AO75400 957 aaKnown RBP16.7■□□□□ 0.26
USF1-202ENST00000368020 PDCP20941 246 aa16.7■□□□□ 0.26
USF1-202ENST00000368020 RPS6KB1P23443 525 aa16.7■□□□□ 0.26
USF1-202ENST00000368020 EZH2Q15910 746 aaKnown RBP16.7■□□□□ 0.26
USF1-202ENST00000368020 TRAPPC3LQ5T215 181 aa16.7■□□□□ 0.26
USF1-202ENST00000368020 KLHL34Q8N239 644 aa16.7■□□□□ 0.26
USF1-202ENST00000368020 AKT1S1Q96B36 256 aa16.7■□□□□ 0.26
USF1-202ENST00000368020 DSCC1Q9BVC3 393 aa16.7■□□□□ 0.26
USF1-202ENST00000368020 TBC1D2BQ9UPU7 963 aa16.7■□□□□ 0.26
USF1-202ENST00000368020 MYH7P12883 1935 aa16.7■□□□□ 0.26
USF1-202ENST00000368020 STX6O43752 255 aa16.7■□□□□ 0.26
USF1-202ENST00000368020 CAMTA2O94983 1202 aa16.7■□□□□ 0.26
USF1-202ENST00000368020 ZFYP08048 801 aaPredicted RBP16.7■□□□□ 0.26
USF1-202ENST00000368020 IFIT1P09914 478 aaKnown RBP16.7■□□□□ 0.26
USF1-202ENST00000368020 HSP90B1P14625 803 aaKnown RBP16.7■□□□□ 0.26
USF1-202ENST00000368020 ZNF589Q86UQ0 364 aaPredicted RBP16.7■□□□□ 0.26
USF1-202ENST00000368020 NARFQ9UHQ1 456 aa16.7■□□□□ 0.26
USF1-202ENST00000368020 ZSCAN22P10073 491 aaPredicted RBP16.69■□□□□ 0.26
USF1-202ENST00000368020 NLRP10Q86W26 655 aa16.69■□□□□ 0.26
USF1-202ENST00000368020 TMEM87AQ8NBN3 555 aa16.69■□□□□ 0.26
USF1-202ENST00000368020 ANP32BQ92688 251 aaKnown RBP16.69■□□□□ 0.26
USF1-202ENST00000368020 CHMP4CQ96CF2 233 aa16.69■□□□□ 0.26
USF1-202ENST00000368020 ARXQ96QS3 562 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms