RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 PCDHB9Q9Y5E1 797 aa3.18□□□□□ -1.9
VPS54-202ENST00000354504 LAMA4Q16363 1823 aa3.18□□□□□ -1.9
VPS54-202ENST00000354504 LAMB2P55268 1798 aa3.18□□□□□ -1.9
VPS54-202ENST00000354504 USP6P35125 1406 aa3.18□□□□□ -1.9
VPS54-202ENST00000354504 EDC4Q6P2E9 1401 aaKnown RBP3.18□□□□□ -1.9
VPS54-202ENST00000354504 TNRQ92752 1358 aa3.18□□□□□ -1.9
VPS54-202ENST00000354504 PRMT3O60678 531 aa3.18□□□□□ -1.9
VPS54-202ENST00000354504 DPYDQ12882 1025 aa3.18□□□□□ -1.9
VPS54-202ENST00000354504 TMEM132EQ6IEE7 984 aa3.18□□□□□ -1.9
VPS54-202ENST00000354504 RNF135Q8IUD6 432 aa3.18□□□□□ -1.9
VPS54-202ENST00000354504 USTQ9Y2C2 406 aa3.18□□□□□ -1.9
VPS54-202ENST00000354504 AFDNP55196 1824 aaKnown RBP3.18□□□□□ -1.9
VPS54-202ENST00000354504 EIF3AQ14152 1382 aaKnown RBP3.17□□□□□ -1.9
VPS54-202ENST00000354504 OGFOD1Q8N543 542 aa3.17□□□□□ -1.9
VPS54-202ENST00000354504 PRIMPOLQ96LW4 560 aa3.17□□□□□ -1.9
VPS54-202ENST00000354504 RNF19AQ9NV58 838 aa3.17□□□□□ -1.9
VPS54-202ENST00000354504 LTBP4Q8N2S1 1624 aa3.17□□□□□ -1.9
VPS54-202ENST00000354504 MYH15Q9Y2K3 1946 aa3.17□□□□□ -1.9
VPS54-202ENST00000354504 BCORQ6W2J9 1755 aa3.17□□□□□ -1.9
VPS54-202ENST00000354504 SSFA2P28290 1259 aa3.17□□□□□ -1.9
VPS54-202ENST00000354504 RC3H1Q5TC82 1133 aaKnown RBP3.17□□□□□ -1.9
VPS54-202ENST00000354504 TSEN2Q8NCE0 465 aaKnown RBP3.17□□□□□ -1.9
VPS54-202ENST00000354504 VRTNQ9H8Y1 702 aa3.17□□□□□ -1.9
VPS54-202ENST00000354504 SEPT3Q9UH03 358 aa3.17□□□□□ -1.9
VPS54-202ENST00000354504 USP3Q9Y6I4 520 aa3.17□□□□□ -1.9
VPS54-202ENST00000354504 KDRP35968 1356 aa3.17□□□□□ -1.9
VPS54-202ENST00000354504 CENPJQ9HC77 1338 aaPredicted RBP3.17□□□□□ -1.9
VPS54-202ENST00000354504 RASA1P20936 1047 aa3.17□□□□□ -1.9
VPS54-202ENST00000354504 YTHDC1Q96MU7 727 aaKnown RBP3.17□□□□□ -1.9
VPS54-202ENST00000354504 MKNK1Q9BUB5 465 aa3.17□□□□□ -1.9
VPS54-202ENST00000354504 TMPRSS4Q9NRS4 437 aa3.17□□□□□ -1.9
VPS54-202ENST00000354504 ADAMTS8Q9UP79 889 aa3.17□□□□□ -1.9
VPS54-202ENST00000354504 TLL2Q9Y6L7 1015 aa3.17□□□□□ -1.9
VPS54-202ENST00000354504 TAF1LQ8IZX4 1826 aa3.17□□□□□ -1.9
VPS54-202ENST00000354504 ARAP2Q8WZ64 1704 aa3.17□□□□□ -1.9
VPS54-202ENST00000354504 ANKARQ7Z5J8 1434 aa3.17□□□□□ -1.9
VPS54-202ENST00000354504 ECM29Q5VYK3 1845 aa3.16□□□□□ -1.9
VPS54-202ENST00000354504 FAM187AA6NFU0 413 aa3.16□□□□□ -1.9
VPS54-202ENST00000354504 IGSF3O75054 1194 aa3.16□□□□□ -1.9
VPS54-202ENST00000354504 TXNDC2Q86VQ3 553 aa3.16□□□□□ -1.9
VPS54-202ENST00000354504 NLRP13Q86W25 1043 aa3.16□□□□□ -1.9
VPS54-202ENST00000354504 ZNF511Q8NB15 262 aa3.16□□□□□ -1.9
VPS54-202ENST00000354504 PCDHGA11Q9Y5H2 935 aa3.16□□□□□ -1.9
VPS54-202ENST00000354504 CRB1P82279 1406 aa3.16□□□□□ -1.9
VPS54-202ENST00000354504 FYB1O15117 783 aa3.16□□□□□ -1.9
VPS54-202ENST00000354504 ANP32CO43423 234 aa3.16□□□□□ -1.9
VPS54-202ENST00000354504 BRD1O95696 1058 aa3.16□□□□□ -1.9
VPS54-202ENST00000354504 RBM25P49756 843 aaKnown RBP3.16□□□□□ -1.9
VPS54-202ENST00000354504 ZNF211Q13398 564 aaPredicted RBP3.16□□□□□ -1.9
VPS54-202ENST00000354504 OXLD1Q5BKU9 147 aa3.16□□□□□ -1.9
VPS54-202ENST00000354504 TBCELQ5QJ74 424 aa3.16□□□□□ -1.9
VPS54-202ENST00000354504 TMCO4Q5TGY1 634 aa3.16□□□□□ -1.9
VPS54-202ENST00000354504 SLC12A5Q9H2X9 1139 aa3.16□□□□□ -1.9
VPS54-202ENST00000354504 MYO5AQ9Y4I1 1855 aaKnown RBP3.16□□□□□ -1.9
VPS54-202ENST00000354504 PDXDC2PQ6P474 469 aa3.16□□□□□ -1.9
VPS54-202ENST00000354504 DNAJC14Q6Y2X3 702 aaPredicted RBP3.16□□□□□ -1.9
VPS54-202ENST00000354504 NXF1Q9UBU9 619 aaKnown RBP3.16□□□□□ -1.9
VPS54-202ENST00000354504 NUDCQ9Y266 331 aa3.16□□□□□ -1.9
VPS54-202ENST00000354504 UTRNP46939 3433 aa3.16□□□□□ -1.9
VPS54-202ENST00000354504 NR3C2P08235 984 aa3.15□□□□□ -1.9
VPS54-202ENST00000354504 FOXK2Q01167 660 aa3.15□□□□□ -1.9
VPS54-202ENST00000354504 SLFN5Q08AF3 891 aa3.15□□□□□ -1.9
VPS54-202ENST00000354504 SH3PXD2AQ5TCZ1 1133 aa3.15□□□□□ -1.9
VPS54-202ENST00000354504 SPEF2Q9C093 1822 aa3.15□□□□□ -1.91
VPS54-202ENST00000354504 CCDC27Q2M243 656 aa3.15□□□□□ -1.91
VPS54-202ENST00000354504 WDR44Q5JSH3 913 aa3.15□□□□□ -1.91
VPS54-202ENST00000354504 C20orf194Q5TEA3 1177 aa3.15□□□□□ -1.91
VPS54-202ENST00000354504 IRF7Q92985 503 aa3.15□□□□□ -1.91
VPS54-202ENST00000354504 ARHGAP9Q9BRR9 750 aa3.15□□□□□ -1.91
VPS54-202ENST00000354504 CCDC9Q9Y3X0 531 aaKnown RBP3.15□□□□□ -1.91
VPS54-202ENST00000354504 MYH3P11055 1940 aa3.15□□□□□ -1.91
VPS54-202ENST00000354504 COL4A1P02462 1669 aa3.15□□□□□ -1.91
VPS54-202ENST00000354504 FAM196BA6NMK8 535 aa3.15□□□□□ -1.91
VPS54-202ENST00000354504 TMF1P82094 1093 aa3.15□□□□□ -1.91
VPS54-202ENST00000354504 KCNA1Q09470 495 aa3.15□□□□□ -1.91
VPS54-202ENST00000354504 GGT6Q6P531 493 aa3.15□□□□□ -1.91
VPS54-202ENST00000354504 KDF1Q8NAX2 398 aaPredicted RBP3.15□□□□□ -1.91
VPS54-202ENST00000354504 KIAA1522Q9P206 1035 aaPredicted RBP3.15□□□□□ -1.91
VPS54-202ENST00000354504 MSH6P52701 1360 aa3.15□□□□□ -1.91
VPS54-202ENST00000354504 KIAA1551Q9HCM1 1747 aa3.14□□□□□ -1.91
VPS54-202ENST00000354504 LY75O60449 1722 aa3.14□□□□□ -1.91
VPS54-202ENST00000354504 NWD2Q9ULI1 1742 aa3.14□□□□□ -1.91
VPS54-202ENST00000354504 TMEM229AB2RXF0 380 aa3.14□□□□□ -1.91
VPS54-202ENST00000354504 C21orf2O43822 256 aa3.14□□□□□ -1.91
VPS54-202ENST00000354504 ZNF853P0CG23 659 aa3.14□□□□□ -1.91
VPS54-202ENST00000354504 GRM5P41594 1212 aa3.14□□□□□ -1.91
VPS54-202ENST00000354504 FKBP5Q13451 457 aaPredicted RBP3.14□□□□□ -1.91
VPS54-202ENST00000354504 SERBP1Q8NC51 408 aaKnown RBP eCLIP3.14□□□□□ -1.91
VPS54-202ENST00000354504 SAP130Q9H0E3 1048 aa3.14□□□□□ -1.91
VPS54-202ENST00000354504 RAB6BQ9NRW1 208 aa3.14□□□□□ -1.91
VPS54-202ENST00000354504 DOCK2Q92608 1830 aa3.14□□□□□ -1.91
VPS54-202ENST00000354504 USP19O94966 1318 aa3.14□□□□□ -1.91
VPS54-202ENST00000354504 ADGRL3Q9HAR2 1447 aa3.14□□□□□ -1.91
VPS54-202ENST00000354504 SLIT2O94813 1529 aa3.14□□□□□ -1.91
VPS54-202ENST00000354504 CSB-PGBD3P0DP91 1061 aa3.14□□□□□ -1.91
VPS54-202ENST00000354504 TPCN2Q8NHX9 752 aa3.14□□□□□ -1.91
VPS54-202ENST00000354504 MRGPRX2Q96LB1 330 aa3.14□□□□□ -1.91
VPS54-202ENST00000354504 LRP6O75581 1613 aa3.14□□□□□ -1.91
VPS54-202ENST00000354504 AHDC1Q5TGY3 1603 aaPredicted RBP3.14□□□□□ -1.91
VPS54-202ENST00000354504 ATAD2Q6PL18 1390 aa3.14□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms