RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 CSPG5O95196 566 aa14.54□□□□□ -0.08
USP47-202ENST00000339865 ZSCAN23Q3MJ62 389 aa14.54□□□□□ -0.08
USP47-202ENST00000339865 CCDC62Q6P9F0 684 aa14.54□□□□□ -0.08
USP47-202ENST00000339865 CATIPQ7Z7H3 387 aa14.54□□□□□ -0.08
USP47-202ENST00000339865 TBC1D31Q96DN5 1066 aa14.54□□□□□ -0.08
USP47-202ENST00000339865 NKIRAS1Q9NYS0 192 aa14.54□□□□□ -0.08
USP47-202ENST00000339865 ZNF213O14771 459 aa14.54□□□□□ -0.08
USP47-202ENST00000339865 INPP1P49441 399 aa14.54□□□□□ -0.08
USP47-202ENST00000339865 NLRP6P59044 892 aa14.54□□□□□ -0.08
USP47-202ENST00000339865 ANKRD24Q8TF21 1146 aa14.54□□□□□ -0.08
USP47-202ENST00000339865 RABEP2Q9H5N1 569 aa14.54□□□□□ -0.08
USP47-202ENST00000339865 ZNF408Q9H9D4 720 aa14.54□□□□□ -0.08
USP47-202ENST00000339865 EXOC6BQ9Y2D4 811 aa14.54□□□□□ -0.08
USP47-202ENST00000339865 PLEKHH1Q9ULM0 1364 aa14.54□□□□□ -0.08
USP47-202ENST00000339865 SPECC1L-ADORA2AF8WAN1 911 aa14.54□□□□□ -0.08
USP47-202ENST00000339865 CABP4P57796 275 aa14.54□□□□□ -0.08
USP47-202ENST00000339865 CCDC122Q5T0U0 273 aa14.54□□□□□ -0.08
USP47-202ENST00000339865 GAS8O95995 478 aa14.54□□□□□ -0.08
USP47-202ENST00000339865 VAT1LQ9HCJ6 419 aa14.54□□□□□ -0.08
USP47-202ENST00000339865 MAK16Q9BXY0 300 aaKnown RBP14.54□□□□□ -0.08
USP47-202ENST00000339865 NDUFAB1O14561 156 aa14.53□□□□□ -0.08
USP47-202ENST00000339865 OPHN1O60890 802 aa14.53□□□□□ -0.08
USP47-202ENST00000339865 AFMP43652 599 aa14.53□□□□□ -0.08
USP47-202ENST00000339865 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.53□□□□□ -0.08
USP47-202ENST00000339865 BAG1Q99933 345 aaPredicted RBP14.53□□□□□ -0.08
USP47-202ENST00000339865 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP14.53□□□□□ -0.08
USP47-202ENST00000339865 PLEKHO1Q53GL0 409 aaPredicted RBP14.53□□□□□ -0.08
USP47-202ENST00000339865 ARFGAP2Q8N6H7 521 aa14.53□□□□□ -0.08
USP47-202ENST00000339865 CABP2Q9NPB3 220 aa14.53□□□□□ -0.08
USP47-202ENST00000339865 PPANQ9NQ55 473 aaKnown RBP14.53□□□□□ -0.08
USP47-202ENST00000339865 IFIT3O14879 490 aaKnown RBP14.53□□□□□ -0.08
USP47-202ENST00000339865 MAP2K2P36507 400 aa14.53□□□□□ -0.08
USP47-202ENST00000339865 FYB2Q5VWT5 728 aa14.53□□□□□ -0.08
USP47-202ENST00000339865 MTRF1LQ9UGC7 380 aaKnown RBP14.53□□□□□ -0.08
USP47-202ENST00000339865 CUX2O14529 1486 aa14.53□□□□□ -0.08
USP47-202ENST00000339865 SYT1P21579 422 aa14.53□□□□□ -0.08
USP47-202ENST00000339865 VPS41P49754 854 aa14.53□□□□□ -0.08
USP47-202ENST00000339865 MRPL46Q9H2W6 279 aaKnown RBP14.53□□□□□ -0.08
USP47-202ENST00000339865 ANKFY1Q9P2R3 1169 aa14.53□□□□□ -0.08
USP47-202ENST00000339865 PFDN1O60925 122 aa14.53□□□□□ -0.08
USP47-202ENST00000339865 MRRFQ96E11 262 aaKnown RBP14.53□□□□□ -0.08
USP47-202ENST00000339865 CTAGE1Q96RT6 745 aa14.53□□□□□ -0.08
USP47-202ENST00000339865 EHMT1Q9H9B1 1298 aa14.53□□□□□ -0.08
USP47-202ENST00000339865 PPP2R5CQ13362 524 aa14.53□□□□□ -0.08
USP47-202ENST00000339865 USH1CQ9Y6N9 552 aa14.53□□□□□ -0.08
USP47-202ENST00000339865 CARMIL2Q6F5E8 1435 aa14.53□□□□□ -0.08
USP47-202ENST00000339865 KRT86O43790 486 aa14.52□□□□□ -0.08
USP47-202ENST00000339865 RASA3Q14644 834 aa14.52□□□□□ -0.08
USP47-202ENST00000339865 METTL24Q5JXM2 366 aa14.52□□□□□ -0.08
USP47-202ENST00000339865 CCDC102BQ68D86 513 aa14.52□□□□□ -0.08
USP47-202ENST00000339865 LZTFL1Q9NQ48 299 aa14.52□□□□□ -0.08
USP47-202ENST00000339865 CUL4BQ13620 913 aa14.52□□□□□ -0.08
USP47-202ENST00000339865 GUCA1BQ9UMX6 200 aa14.52□□□□□ -0.08
USP47-202ENST00000339865 CFAP65Q6ZU64 1925 aaKnown RBP14.52□□□□□ -0.08
USP47-202ENST00000339865 GJB2P29033 226 aa14.52□□□□□ -0.09
USP47-202ENST00000339865 AFAP1L1Q8TED9 768 aa14.52□□□□□ -0.09
USP47-202ENST00000339865 SYKP43405 635 aa14.52□□□□□ -0.09
USP47-202ENST00000339865 KARSQ15046 597 aaKnown RBP14.52□□□□□ -0.09
USP47-202ENST00000339865 ATP6V0A2Q9Y487 856 aa14.52□□□□□ -0.09
USP47-202ENST00000339865 ANKIB1Q9P2G1 1089 aa14.52□□□□□ -0.09
USP47-202ENST00000339865 CCDC18Q5T9S5 1454 aa14.52□□□□□ -0.09
USP47-202ENST00000339865 GIPC1O14908 333 aa14.51□□□□□ -0.09
USP47-202ENST00000339865 HMGB1P09429 215 aaKnown RBP14.51□□□□□ -0.09
USP47-202ENST00000339865 RAB3IPQ96QF0 476 aaPredicted RBP14.51□□□□□ -0.09
USP47-202ENST00000339865 PNMA8AQ86V59 439 aaPredicted RBP14.51□□□□□ -0.09
USP47-202ENST00000339865 SIRT1Q96EB6 747 aa14.51□□□□□ -0.09
USP47-202ENST00000339865 TACO1Q9BSH4 297 aaKnown RBP14.51□□□□□ -0.09
USP47-202ENST00000339865 STK38LQ9Y2H1 464 aa14.51□□□□□ -0.09
USP47-202ENST00000339865 IGHMBP2P38935 993 aaKnown RBP14.51□□□□□ -0.09
USP47-202ENST00000339865 INF2Q27J81 1249 aa14.51□□□□□ -0.09
USP47-202ENST00000339865 LIMCH1Q9UPQ0 1083 aa14.51□□□□□ -0.09
USP47-202ENST00000339865 PPME1Q9Y570 386 aa14.51□□□□□ -0.09
USP47-202ENST00000339865 ZPR1O75312 459 aa14.51□□□□□ -0.09
USP47-202ENST00000339865 ATP5DP30049 168 aa14.51□□□□□ -0.09
USP47-202ENST00000339865 CLUL1Q15846 466 aa14.51□□□□□ -0.09
USP47-202ENST00000339865 BRD4O60885 1362 aaPredicted RBP14.51□□□□□ -0.09
USP47-202ENST00000339865 STAT6P42226 847 aa14.51□□□□□ -0.09
USP47-202ENST00000339865 ZNF622Q969S3 477 aaKnown RBP eCLIP14.51□□□□□ -0.093e-7■■□□□ 12.5
USP47-202ENST00000339865 PPFIA3O75145 1194 aa14.5□□□□□ -0.09
USP47-202ENST00000339865 CCDC89Q8N998 374 aa14.5□□□□□ -0.09
USP47-202ENST00000339865 MTUS1Q9ULD2 1270 aa14.5□□□□□ -0.09
USP47-202ENST00000339865 TRAF3IP1Q8TDR0 691 aaPredicted RBP14.5□□□□□ -0.09
USP47-202ENST00000339865 TUBB4BP68371 445 aa14.5□□□□□ -0.09
USP47-202ENST00000339865 ZNF569Q5MCW4 686 aa14.5□□□□□ -0.09
USP47-202ENST00000339865 PPP1R21Q6ZMI0 780 aa14.5□□□□□ -0.09
USP47-202ENST00000339865 SMARCA5O60264 1052 aaPredicted RBP14.5□□□□□ -0.09
USP47-202ENST00000339865 MUM1Q2TAK8 710 aa14.5□□□□□ -0.09
USP47-202ENST00000339865 SPOUT1Q5T280 376 aaKnown RBP14.5□□□□□ -0.09
USP47-202ENST00000339865 PROSER2Q86WR7 435 aaPredicted RBP14.5□□□□□ -0.09
USP47-202ENST00000339865 LMBR1Q8WVP7 490 aa14.5□□□□□ -0.09
USP47-202ENST00000339865 AP1ARQ63HQ0 302 aa14.5□□□□□ -0.09
USP47-202ENST00000339865 CHMP2AO43633 222 aa14.49□□□□□ -0.09
USP47-202ENST00000339865 SLC4A8Q2Y0W8 1093 aa14.49□□□□□ -0.09
USP47-202ENST00000339865 POTEDQ86YR6 584 aa14.49□□□□□ -0.09
USP47-202ENST00000339865 PYM1Q9BRP8 204 aaKnown RBP14.49□□□□□ -0.09
USP47-202ENST00000339865 OGFRQ9NZT2 677 aa14.49□□□□□ -0.09
USP47-202ENST00000339865 TBCAO75347 108 aaKnown RBP14.49□□□□□ -0.09
USP47-202ENST00000339865 UVSSAQ2YD98 709 aa14.49□□□□□ -0.09
USP47-202ENST00000339865 CAVIN2O95810 425 aa14.49□□□□□ -0.09
USP47-202ENST00000339865 CCDC186Q7Z3E2 898 aa14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 238.8 ms