RNA–Protein interactions for RNA: ENST00000316763.7

VRK3-201, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 1,938 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-201ENST00000316763 G3BP1Q13283 466 aaKnown RBP eCLIP17.08■□□□□ 0.33
VRK3-201ENST00000316763 CUL4AQ13619 759 aa17.08■□□□□ 0.33
VRK3-201ENST00000316763 SUSD4Q5VX71 490 aa17.08■□□□□ 0.33
VRK3-201ENST00000316763 BICDL1Q6ZP65 573 aa17.08■□□□□ 0.33
VRK3-201ENST00000316763 KIAA1211Q6ZU35 1233 aa17.08■□□□□ 0.33
VRK3-201ENST00000316763 KLHDC4Q8TBB5 520 aa17.08■□□□□ 0.33
VRK3-201ENST00000316763 RUFY2Q8WXA3 655 aa17.08■□□□□ 0.33
VRK3-201ENST00000316763 INTS4Q96HW7 963 aaKnown RBP17.08■□□□□ 0.33
VRK3-201ENST00000316763 PALD1Q9ULE6 856 aa17.08■□□□□ 0.33
VRK3-201ENST00000316763 NIP7Q9Y221 180 aaKnown RBP eCLIP17.08■□□□□ 0.33
VRK3-201ENST00000316763 SGSM2O43147 1006 aa17.08■□□□□ 0.32
VRK3-201ENST00000316763 MAP4K4O95819 1239 aaPredicted RBP17.08■□□□□ 0.32
VRK3-201ENST00000316763 HSPA4P34932 840 aa17.08■□□□□ 0.32
VRK3-201ENST00000316763 IRS4O14654 1257 aaPredicted RBP17.07■□□□□ 0.32
VRK3-201ENST00000316763 IFIT2P09913 472 aaKnown RBP17.07■□□□□ 0.32
VRK3-201ENST00000316763 UTP14AQ9BVJ6 771 aaKnown RBP17.07■□□□□ 0.32
VRK3-201ENST00000316763 NFIXQ14938 502 aa17.06■□□□□ 0.32
VRK3-201ENST00000316763 MSL1Q68DK7 614 aa17.06■□□□□ 0.32
VRK3-201ENST00000316763 NLGN1Q8N2Q7 840 aa17.06■□□□□ 0.32
VRK3-201ENST00000316763 ECHDC1Q9NTX5 307 aa17.06■□□□□ 0.32
VRK3-201ENST00000316763 CASZ1Q86V15 1759 aa17.06■□□□□ 0.32
VRK3-201ENST00000316763 SH3TC1Q8TE82 1336 aa17.06■□□□□ 0.32
VRK3-201ENST00000316763 RAD50Q92878 1312 aa17.06■□□□□ 0.32
VRK3-201ENST00000316763 NTSR2O95665 410 aa17.06■□□□□ 0.32
VRK3-201ENST00000316763 TM4SF1P30408 202 aa17.06■□□□□ 0.32
VRK3-201ENST00000316763 TTLL11Q8NHH1 800 aa17.06■□□□□ 0.32
VRK3-201ENST00000316763 SETDB2Q96T68 719 aa17.06■□□□□ 0.32
VRK3-201ENST00000316763 SIL1Q9H173 461 aa17.06■□□□□ 0.32
VRK3-201ENST00000316763 PDE8AO60658 829 aa17.05■□□□□ 0.32
VRK3-201ENST00000316763 CTSWP56202 376 aa17.05■□□□□ 0.32
VRK3-201ENST00000316763 SLC16A10Q8TF71 515 aa17.05■□□□□ 0.32
VRK3-201ENST00000316763 DIAPH3Q9NSV4 1193 aa17.05■□□□□ 0.32
VRK3-201ENST00000316763 CHMP3Q9Y3E7 222 aa17.05■□□□□ 0.32
VRK3-201ENST00000316763 FAM177BA6PVY3 158 aa17.04■□□□□ 0.32
VRK3-201ENST00000316763 PKP1Q13835 747 aa17.04■□□□□ 0.32
VRK3-201ENST00000316763 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.04■□□□□ 0.32
VRK3-201ENST00000316763 PANK2Q9BZ23 570 aa17.04■□□□□ 0.32
VRK3-201ENST00000316763 LMBRD1Q9NUN5 540 aa17.04■□□□□ 0.32
VRK3-201ENST00000316763 CCDC57Q2TAC2 916 aa17.03■□□□□ 0.32
VRK3-201ENST00000316763 ATG9AQ7Z3C6 839 aa17.03■□□□□ 0.32
VRK3-201ENST00000316763 LSG1Q9H089 658 aaKnown RBP17.03■□□□□ 0.32
VRK3-201ENST00000316763 FBXO3Q9UK99 471 aa17.03■□□□□ 0.32
VRK3-201ENST00000316763 ZDHHC9Q9Y397 364 aa17.03■□□□□ 0.32
VRK3-201ENST00000316763 COL24A1Q17RW2 1714 aa17.03■□□□□ 0.32
VRK3-201ENST00000316763 CIAO1O76071 339 aa17.02■□□□□ 0.32
VRK3-201ENST00000316763 ZBTB7AO95365 584 aa17.02■□□□□ 0.32
VRK3-201ENST00000316763 CWC27Q6UX04 472 aaKnown RBP17.02■□□□□ 0.32
VRK3-201ENST00000316763 AACSQ86V21 672 aa17.02■□□□□ 0.32
VRK3-201ENST00000316763 EVI5LQ96CN4 794 aa17.02■□□□□ 0.32
VRK3-201ENST00000316763 HIP1O00291 1037 aa17.02■□□□□ 0.31
VRK3-201ENST00000316763 HSP90B1P14625 803 aaKnown RBP17.02■□□□□ 0.31
VRK3-201ENST00000316763 NCLP19338 710 aaKnown RBP17.02■□□□□ 0.31
VRK3-201ENST00000316763 DDR1Q08345 913 aa17.02■□□□□ 0.31
VRK3-201ENST00000316763 IFIT5Q13325 482 aaKnown RBP17.02■□□□□ 0.31
VRK3-201ENST00000316763 EAF2Q96CJ1 260 aaPredicted RBP17.02■□□□□ 0.31
VRK3-201ENST00000316763 UPF3BQ9BZI7 483 aaKnown RBP17.02■□□□□ 0.31
VRK3-201ENST00000316763 IL25Q9H293 177 aa17.02■□□□□ 0.31
VRK3-201ENST00000316763 EYA2O00167 538 aa17.01■□□□□ 0.31
VRK3-201ENST00000316763 MMP10P09238 476 aa17.01■□□□□ 0.31
VRK3-201ENST00000316763 IL15P40933 162 aaPredicted RBP17.01■□□□□ 0.31
VRK3-201ENST00000316763 ZNF594Q96JF6 807 aaPredicted RBP17.01■□□□□ 0.31
VRK3-201ENST00000316763 GREM2Q9H772 168 aa17.01■□□□□ 0.31
VRK3-201ENST00000316763 SNX14Q9Y5W7 946 aa17.01■□□□□ 0.31
VRK3-201ENST00000316763 CARMIL3Q8ND23 1372 aa17.01■□□□□ 0.31
VRK3-201ENST00000316763 POLRMTO00411 1230 aaKnown RBP17■□□□□ 0.31
VRK3-201ENST00000316763 BRD1O95696 1058 aa17■□□□□ 0.31
VRK3-201ENST00000316763 HCLS1P14317 486 aaPredicted RBP17■□□□□ 0.31
VRK3-201ENST00000316763 TFCP2Q12800 502 aa17■□□□□ 0.31
VRK3-201ENST00000316763 NOL8Q76FK4 1167 aaKnown RBP17■□□□□ 0.31
VRK3-201ENST00000316763 GAS2L3Q86XJ1 694 aa17■□□□□ 0.31
VRK3-201ENST00000316763 ATF5Q9Y2D1 282 aaPredicted RBP17■□□□□ 0.31
VRK3-201ENST00000316763 PRPF40AO75400 957 aaKnown RBP17■□□□□ 0.31
VRK3-201ENST00000316763 SERPINB2P05120 415 aa17■□□□□ 0.31
VRK3-201ENST00000316763 ITGA6P23229 1130 aa17■□□□□ 0.31
VRK3-201ENST00000316763 NBPF5PQ86XG9 351 aaPredicted RBP17■□□□□ 0.31
VRK3-201ENST00000316763 MTFR1LQ9H019 292 aa17■□□□□ 0.31
VRK3-201ENST00000316763 LRRC24Q50LG9 513 aa16.99■□□□□ 0.31
VRK3-201ENST00000316763 TPTE2Q6XPS3 522 aa16.99■□□□□ 0.31
VRK3-201ENST00000316763 CCDC85AQ96PX6 553 aaPredicted RBP16.99■□□□□ 0.31
VRK3-201ENST00000316763 ZNF445P59923 1031 aa16.98■□□□□ 0.31
VRK3-201ENST00000316763 TNNI3KQ59H18 835 aa16.98■□□□□ 0.31
VRK3-201ENST00000316763 SLC10A5Q5PT55 438 aa16.98■□□□□ 0.31
VRK3-201ENST00000316763 PUS3Q9BZE2 481 aaKnown RBP16.98■□□□□ 0.31
VRK3-201ENST00000316763 NYXQ9GZU5 481 aa16.98■□□□□ 0.31
VRK3-201ENST00000316763 GPR108Q9NPR9 543 aa16.98■□□□□ 0.31
VRK3-201ENST00000316763 PARP3Q9Y6F1 533 aa16.98■□□□□ 0.31
VRK3-201ENST00000316763 FPGT-TNNI3KV9GXZ4 949 aa16.98■□□□□ 0.31
VRK3-201ENST00000316763 RTL9Q8NET4 1388 aa16.98■□□□□ 0.31
VRK3-201ENST00000316763 MYH3P11055 1940 aa16.98■□□□□ 0.31
VRK3-201ENST00000316763 ANKRD18BA2A2Z9 1011 aa16.98■□□□□ 0.31
VRK3-201ENST00000316763 ERFEQ4G0M1 354 aa16.98■□□□□ 0.31
VRK3-201ENST00000316763 CAVIN1Q6NZI2 390 aaKnown RBP16.98■□□□□ 0.31
VRK3-201ENST00000316763 CCDC24Q8N4L8 307 aa16.98■□□□□ 0.31
VRK3-201ENST00000316763 ANP32BQ92688 251 aaKnown RBP16.98■□□□□ 0.31
VRK3-201ENST00000316763 DDX60Q8IY21 1712 aaKnown RBP16.97■□□□□ 0.31
VRK3-201ENST00000316763 MBD3O95983 291 aa16.97■□□□□ 0.31
VRK3-201ENST00000316763 GTF2E1P29083 439 aaPredicted RBP16.97■□□□□ 0.31
VRK3-201ENST00000316763 NRXN2Q9P2S2 1712 aa16.97■□□□□ 0.31
VRK3-201ENST00000316763 WDR33Q9C0J8 1336 aaKnown RBP16.97■□□□□ 0.31
VRK3-201ENST00000316763 LAMB2P55268 1798 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms