RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 NPHP4O75161 1426 aaPredicted RBP16.8■□□□□ 0.28
SDC1-201ENST00000254351 RPS6KB1P23443 525 aa16.79■□□□□ 0.28
SDC1-201ENST00000254351 USP28Q96RU2 1077 aa16.79■□□□□ 0.28
SDC1-201ENST00000254351 CARD6Q9BX69 1037 aa16.79■□□□□ 0.28
SDC1-201ENST00000254351 DPCR1Q3MIW9 517 aa16.79■□□□□ 0.28
SDC1-201ENST00000254351 SMARCE1Q969G3 411 aa16.79■□□□□ 0.28
SDC1-201ENST00000254351 DNAJC2Q99543 621 aaKnown RBP16.79■□□□□ 0.28
SDC1-201ENST00000254351 TTC21BQ7Z4L5 1316 aa16.79■□□□□ 0.28
SDC1-201ENST00000254351 KIF20BQ96Q89 1820 aa16.79■□□□□ 0.28
SDC1-201ENST00000254351 GNAT3A8MTJ3 354 aa16.79■□□□□ 0.28
SDC1-201ENST00000254351 SFPQP23246 707 aaKnown RBP eCLIP16.79■□□□□ 0.285e-6■□□□□ 9.6
SDC1-201ENST00000254351 CYP2C19P33261 490 aa16.79■□□□□ 0.28
SDC1-201ENST00000254351 TEFQ10587 303 aa16.79■□□□□ 0.28
SDC1-201ENST00000254351 ARMCX5Q6P1M9 558 aa16.79■□□□□ 0.28
SDC1-201ENST00000254351 POLR3DP05423 398 aaPredicted RBP16.78■□□□□ 0.28
SDC1-201ENST00000254351 EAF2Q96CJ1 260 aaPredicted RBP16.78■□□□□ 0.28
SDC1-201ENST00000254351 AMOTL2Q9Y2J4 779 aa16.78■□□□□ 0.28
SDC1-201ENST00000254351 POLA2Q14181 598 aa16.78■□□□□ 0.28
SDC1-201ENST00000254351 CEP57L1Q8IYX8 460 aa16.78■□□□□ 0.28
SDC1-201ENST00000254351 STK11IPQ8N1F8 1099 aa16.78■□□□□ 0.28
SDC1-201ENST00000254351 MRFAP1L1Q96HT8 127 aa16.78■□□□□ 0.28
SDC1-201ENST00000254351 GPATCH3Q96I76 525 aa16.78■□□□□ 0.28
SDC1-201ENST00000254351 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.78■□□□□ 0.28
SDC1-201ENST00000254351 AOX1Q06278 1338 aa16.78■□□□□ 0.28
SDC1-201ENST00000254351 TEX35Q5T0J7 233 aa16.77■□□□□ 0.28
SDC1-201ENST00000254351 NBPF11Q86T75 865 aa16.77■□□□□ 0.28
SDC1-201ENST00000254351 DNAAF4Q8WXU2 420 aa16.77■□□□□ 0.28
SDC1-201ENST00000254351 MAP4K1Q92918 833 aa16.77■□□□□ 0.28
SDC1-201ENST00000254351 IL17RAQ96F46 866 aa16.77■□□□□ 0.28
SDC1-201ENST00000254351 XRN1Q8IZH2 1706 aaKnown RBP16.77■□□□□ 0.28
SDC1-201ENST00000254351 ANKRD65E5RJM6 399 aa16.77■□□□□ 0.27
SDC1-201ENST00000254351 RNF20Q5VTR2 975 aa16.77■□□□□ 0.27
SDC1-201ENST00000254351 CHMP4CQ96CF2 233 aa16.77■□□□□ 0.27
SDC1-201ENST00000254351 LCMT1Q9UIC8 334 aa16.77■□□□□ 0.27
SDC1-201ENST00000254351 RESTQ13127 1097 aa16.76■□□□□ 0.27
SDC1-201ENST00000254351 SF3A1Q15459 793 aaKnown RBP16.76■□□□□ 0.27
SDC1-201ENST00000254351 EVI5LQ96CN4 794 aa16.76■□□□□ 0.27
SDC1-201ENST00000254351 ANKRD26Q9UPS8 1709 aa16.76■□□□□ 0.27
SDC1-201ENST00000254351 AATKQ6ZMQ8 1374 aa16.76■□□□□ 0.27
SDC1-201ENST00000254351 ATP1A3P13637 1013 aa16.76■□□□□ 0.27
SDC1-201ENST00000254351 UTP14AQ9BVJ6 771 aaKnown RBP16.76■□□□□ 0.27
SDC1-201ENST00000254351 GJB4Q9NTQ9 266 aa16.76■□□□□ 0.27
SDC1-201ENST00000254351 APOBRQ0VD83 1088 aa16.76■□□□□ 0.27
SDC1-201ENST00000254351 TM6SF1Q9BZW5 370 aa16.76■□□□□ 0.27
SDC1-201ENST00000254351 RSPH14Q9UHP6 348 aa16.76■□□□□ 0.27
SDC1-201ENST00000254351 FEZ2Q9UHY8 353 aaPredicted RBP16.76■□□□□ 0.27
SDC1-201ENST00000254351 CFAP45Q9UL16 551 aa16.76■□□□□ 0.27
SDC1-201ENST00000254351 SCRN1Q12765 414 aa16.75■□□□□ 0.27
SDC1-201ENST00000254351 ANO10Q9NW15 660 aa16.75■□□□□ 0.27
SDC1-201ENST00000254351 ZKSCAN7Q9P0L1 754 aaPredicted RBP16.75■□□□□ 0.27
SDC1-201ENST00000254351 OAS2P29728 719 aaKnown RBP16.75■□□□□ 0.27
SDC1-201ENST00000254351 LMAN1P49257 510 aa16.75■□□□□ 0.27
SDC1-201ENST00000254351 RBM43Q6ZSC3 357 aaKnown RBP16.75■□□□□ 0.27
SDC1-201ENST00000254351 LGR6Q9HBX8 967 aa16.75■□□□□ 0.27
SDC1-201ENST00000254351 H2AFXP16104 143 aaPredicted RBP16.74■□□□□ 0.27
SDC1-201ENST00000254351 CCDC191Q8NCU4 936 aa16.74■□□□□ 0.27
SDC1-201ENST00000254351 A0A0G2JLW4 131 aa16.74■□□□□ 0.27
SDC1-201ENST00000254351 PRAMEF22A3QJZ6 481 aa16.74■□□□□ 0.27
SDC1-201ENST00000254351 NEMFO60524 1076 aa16.74■□□□□ 0.27
SDC1-201ENST00000254351 PDILTQ8N807 584 aa16.74■□□□□ 0.27
SDC1-201ENST00000254351 NEK1Q96PY6 1258 aa16.74■□□□□ 0.27
SDC1-201ENST00000254351 MAP3K2Q9Y2U5 619 aa16.74■□□□□ 0.27
SDC1-201ENST00000254351 LMTK3Q96Q04 1460 aa16.73■□□□□ 0.27
SDC1-201ENST00000254351 SASH3O75995 380 aa16.73■□□□□ 0.27
SDC1-201ENST00000254351 G3BP1Q13283 466 aaKnown RBP eCLIP16.73■□□□□ 0.27
SDC1-201ENST00000254351 BEND3Q5T5X7 828 aa16.73■□□□□ 0.27
SDC1-201ENST00000254351 CDC25BP30305 580 aa16.73■□□□□ 0.27
SDC1-201ENST00000254351 NDUFA8P51970 172 aa16.73■□□□□ 0.27
SDC1-201ENST00000254351 ANKRD1Q15327 319 aa16.73■□□□□ 0.27
SDC1-201ENST00000254351 PROSER3Q2NL68 480 aa16.73■□□□□ 0.27
SDC1-201ENST00000254351 EVCP57679 992 aa16.72■□□□□ 0.27
SDC1-201ENST00000254351 NGDNQ8NEJ9 315 aaKnown RBP16.72■□□□□ 0.27
SDC1-201ENST00000254351 TTC41PQ6P2S7 1318 aa16.72■□□□□ 0.27
SDC1-201ENST00000254351 CHD2O14647 1828 aaKnown RBP16.72■□□□□ 0.27
SDC1-201ENST00000254351 FANCGO15287 622 aa16.72■□□□□ 0.27
SDC1-201ENST00000254351 HSP90AB4PQ58FF6 505 aa16.72■□□□□ 0.27
SDC1-201ENST00000254351 ARGLU1Q9NWB6 273 aaPredicted RBP16.72■□□□□ 0.27
SDC1-201ENST00000254351 ADCY9O60503 1353 aa16.72■□□□□ 0.27
SDC1-201ENST00000254351 KCNA6P17658 529 aa16.72■□□□□ 0.27
SDC1-201ENST00000254351 SARM1Q6SZW1 724 aa16.72■□□□□ 0.27
SDC1-201ENST00000254351 ORC3Q9UBD5 711 aaPredicted RBP16.72■□□□□ 0.27
SDC1-201ENST00000254351 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.71■□□□□ 0.27
SDC1-201ENST00000254351 SASH1O94885 1247 aa16.71■□□□□ 0.27
SDC1-201ENST00000254351 DDX46Q7L014 1031 aaKnown RBP16.71■□□□□ 0.27
SDC1-201ENST00000254351 PTPDC1A2A3K4 754 aa16.71■□□□□ 0.27
SDC1-201ENST00000254351 SERPINC1P01008 464 aa16.71■□□□□ 0.27
SDC1-201ENST00000254351 NLRP6P59044 892 aa16.71■□□□□ 0.27
SDC1-201ENST00000254351 CFAP100Q494V2 611 aa16.71■□□□□ 0.27
SDC1-201ENST00000254351 AEBP2Q6ZN18 517 aaPredicted RBP16.71■□□□□ 0.27
SDC1-201ENST00000254351 FAM53CQ9NYF3 392 aa16.71■□□□□ 0.27
SDC1-201ENST00000254351 EPB41L2O43491 1005 aaKnown RBP16.7■□□□□ 0.26
SDC1-201ENST00000254351 PHACTR2O75167 634 aa16.7■□□□□ 0.26
SDC1-201ENST00000254351 MCM6Q14566 821 aa16.7■□□□□ 0.26
SDC1-201ENST00000254351 ZSCAN26Q16670 478 aa16.7■□□□□ 0.26
SDC1-201ENST00000254351 PAXIP1Q6ZW49 1069 aaPredicted RBP16.7■□□□□ 0.26
SDC1-201ENST00000254351 NAT10Q9H0A0 1025 aaKnown RBP16.7■□□□□ 0.26
SDC1-201ENST00000254351 TULP2O00295 520 aa16.7■□□□□ 0.26
SDC1-201ENST00000254351 PIP4K2AP48426 406 aaPredicted RBP16.7■□□□□ 0.26
SDC1-201ENST00000254351 HSPA2P54652 639 aa16.7■□□□□ 0.26
SDC1-201ENST00000254351 FAM160A1Q05DH4 1040 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms