RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 RAB1CQ92928 201 aa6.07□□□□□ -1.44
VPS41-208ENST00000448833 TMEM186Q96B77 213 aa6.07□□□□□ -1.44
VPS41-208ENST00000448833 TAMM41Q96BW9 452 aa6.07□□□□□ -1.44
VPS41-208ENST00000448833 RAB39BQ96DA2 213 aa6.07□□□□□ -1.44
VPS41-208ENST00000448833 SGTBQ96EQ0 304 aa6.07□□□□□ -1.44
VPS41-208ENST00000448833 JMJD8Q96S16 334 aa6.07□□□□□ -1.44
VPS41-208ENST00000448833 DIRC2Q96SL1 478 aa6.07□□□□□ -1.44
VPS41-208ENST00000448833 SEPHS2Q99611 448 aa6.07□□□□□ -1.44
VPS41-208ENST00000448833 SH3GL3Q99963 347 aa6.07□□□□□ -1.44
VPS41-208ENST00000448833 SYT3Q9BQG1 590 aa6.07□□□□□ -1.44
VPS41-208ENST00000448833 MRPL13Q9BYD1 178 aaKnown RBP6.07□□□□□ -1.44
VPS41-208ENST00000448833 EGLN1Q9GZT9 426 aa6.07□□□□□ -1.44
VPS41-208ENST00000448833 TPK1Q9H3S4 243 aa6.07□□□□□ -1.44
VPS41-208ENST00000448833 ZNF224Q9NZL3 707 aa6.07□□□□□ -1.44
VPS41-208ENST00000448833 TAAR3PQ9P1P4 343 aa6.07□□□□□ -1.44
VPS41-208ENST00000448833 ZDHHC8Q9ULC8 765 aa6.07□□□□□ -1.44
VPS41-208ENST00000448833 IGLV3-9A0A075B6K5 115 aa6.06□□□□□ -1.44
VPS41-208ENST00000448833 A6NIZ1 184 aa6.06□□□□□ -1.44
VPS41-208ENST00000448833 C12orf71A8MTZ7 269 aa6.06□□□□□ -1.44
VPS41-208ENST00000448833 J3QLI3 93 aa6.06□□□□□ -1.44
VPS41-208ENST00000448833 KPNA4O00629 521 aaPredicted RBP6.06□□□□□ -1.44
VPS41-208ENST00000448833 SLC22A2O15244 555 aa6.06□□□□□ -1.44
VPS41-208ENST00000448833 AHCYL1O43865 530 aa6.06□□□□□ -1.44
VPS41-208ENST00000448833 LYPD3O95274 346 aa6.06□□□□□ -1.44
VPS41-208ENST00000448833 HPXP02790 462 aa6.06□□□□□ -1.44
VPS41-208ENST00000448833 OPN1SWP03999 348 aa6.06□□□□□ -1.44
VPS41-208ENST00000448833 F13BP05160 661 aa6.06□□□□□ -1.44
VPS41-208ENST00000448833 NAT2P11245 290 aa6.06□□□□□ -1.44
VPS41-208ENST00000448833 COL8A2P25067 703 aa6.06□□□□□ -1.44
VPS41-208ENST00000448833 STOMP27105 288 aa6.06□□□□□ -1.44
VPS41-208ENST00000448833 ALDH3B1P43353 468 aa6.06□□□□□ -1.44
VPS41-208ENST00000448833 GDI2P50395 445 aaKnown RBP6.06□□□□□ -1.44
VPS41-208ENST00000448833 ARHGDIAP52565 204 aa6.06□□□□□ -1.44
VPS41-208ENST00000448833 UGT2B15P54855 530 aa6.06□□□□□ -1.44
VPS41-208ENST00000448833 RAP1BP61224 184 aa6.06□□□□□ -1.44
VPS41-208ENST00000448833 RAP1AP62834 184 aa6.06□□□□□ -1.44
VPS41-208ENST00000448833 SELENOWP63302 87 aa6.06□□□□□ -1.44
VPS41-208ENST00000448833 RPL18Q07020 188 aaKnown RBP6.06□□□□□ -1.44
VPS41-208ENST00000448833 TTMPQ5BVD1 217 aa6.06□□□□□ -1.44
VPS41-208ENST00000448833 FAM27BQ5VT28 67 aa6.06□□□□□ -1.44
VPS41-208ENST00000448833 WDR88Q6ZMY6 472 aa6.06□□□□□ -1.44
VPS41-208ENST00000448833 RRM2BQ7LG56 351 aa6.06□□□□□ -1.44
VPS41-208ENST00000448833 ARPINQ7Z6K5 226 aa6.06□□□□□ -1.44
VPS41-208ENST00000448833 SYT9Q86SS6 491 aa6.06□□□□□ -1.44
VPS41-208ENST00000448833 CALHM3Q86XJ0 350 aa6.06□□□□□ -1.44
VPS41-208ENST00000448833 RBM45Q8IUH3 476 aaKnown RBP6.06□□□□□ -1.44
VPS41-208ENST00000448833 ZNF584Q8IVC4 421 aa6.06□□□□□ -1.44
VPS41-208ENST00000448833 RNF113BQ8IZP6 322 aaKnown RBP6.06□□□□□ -1.44
VPS41-208ENST00000448833 NOXO1Q8NFA2 376 aa6.06□□□□□ -1.44
VPS41-208ENST00000448833 OR1J1Q8NGS3 322 aa6.06□□□□□ -1.44
VPS41-208ENST00000448833 C10orf82Q8WW14 230 aa6.06□□□□□ -1.44
VPS41-208ENST00000448833 ASB10Q8WXI3 467 aa6.06□□□□□ -1.44
VPS41-208ENST00000448833 COG8Q96MW5 612 aa6.06□□□□□ -1.44
VPS41-208ENST00000448833 PRSS27Q9BQR3 290 aa6.06□□□□□ -1.44
VPS41-208ENST00000448833 WFDC6Q9BQY6 131 aa6.06□□□□□ -1.44
VPS41-208ENST00000448833 ALG12Q9BV10 488 aa6.06□□□□□ -1.44
VPS41-208ENST00000448833 RACGAP1Q9H0H5 632 aa6.06□□□□□ -1.44
VPS41-208ENST00000448833 TXNIPQ9H3M7 391 aa6.06□□□□□ -1.44
VPS41-208ENST00000448833 ELOVL3Q9HB03 270 aa6.06□□□□□ -1.44
VPS41-208ENST00000448833 MEPEQ9NQ76 525 aaPredicted RBP6.06□□□□□ -1.44
VPS41-208ENST00000448833 ZNF275Q9NSD4 429 aaPredicted RBP6.06□□□□□ -1.44
VPS41-208ENST00000448833 HIF1ANQ9NWT6 349 aa6.06□□□□□ -1.44
VPS41-208ENST00000448833 TIMM10BQ9Y5J6 103 aa6.06□□□□□ -1.44
VPS41-208ENST00000448833 DYSFO75923 2080 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 SVEP1Q4LDE5 3571 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 IGHV1-69-2A0A0G2JMI3 117 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 A0A0G2JMP0 313 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 A0A0X1KG70 313 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 CLDN25C9JDP6 229 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 LYNX1G3V0Z9 82 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 MRASO14807 208 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 TRMUO75648 421 aaKnown RBP6.05□□□□□ -1.44
VPS41-208ENST00000448833 PNPP00491 289 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 THY1P04216 161 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 IGFBP1P08833 259 aaPredicted RBP6.05□□□□□ -1.44
VPS41-208ENST00000448833 CST2P09228 141 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 TSPAN19P0C672 248 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 PATE4P0C8F1 98 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 FAM157BP0CG42 384 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 LYNX1P0DP58 116 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 GAAP10253 952 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 TCN1P20061 433 aaPredicted RBP6.05□□□□□ -1.44
VPS41-208ENST00000448833 CCNOP22674 350 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 TNFSF4P23510 183 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 IL2RGP31785 369 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 KDELR2P33947 212 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 AQP2P41181 271 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 SLC9A3P48764 834 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 GZMMP51124 257 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 ZNF81P51508 661 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 ARFIP2P53365 341 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 SEC24CP53992 1094 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 RPL27P61353 136 aaKnown RBP6.05□□□□□ -1.44
VPS41-208ENST00000448833 CCL8P80075 99 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 CD47Q08722 323 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 PIN1Q13526 163 aaPredicted RBP6.05□□□□□ -1.44
VPS41-208ENST00000448833 CCNIQ14094 377 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 SELPLGQ14242 412 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 MELKQ14680 651 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 TRAM2Q15035 370 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 83.9 ms