RNA–Protein interactions for RNA: ENST00000600888.2

CKS1BP3-201, Transcript of CDC28 protein kinase regulatory subunit 1B pseudogene 3, humanhuman

BASIC

Gene CKS1BP3, Length 237 nt, Biotype processed pseudogene, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP3-201ENST00000600888 RNF175Q8N4F7 328 aa3.06□□□□□ -1.92
CKS1BP3-201ENST00000600888 TMEM156Q8N614 296 aa3.06□□□□□ -1.92
CKS1BP3-201ENST00000600888 GBP7Q8N8V2 638 aaPredicted RBP3.06□□□□□ -1.92
CKS1BP3-201ENST00000600888 ACBD4Q8NC06 268 aa3.06□□□□□ -1.92
CKS1BP3-201ENST00000600888 C17orf47Q8NEP4 570 aa3.06□□□□□ -1.92
CKS1BP3-201ENST00000600888 OR4F6Q8NGB9 312 aa3.06□□□□□ -1.92
CKS1BP3-201ENST00000600888 OR52B6Q8NGF0 335 aa3.06□□□□□ -1.92
CKS1BP3-201ENST00000600888 PAQR8Q8TEZ7 354 aa3.06□□□□□ -1.92
CKS1BP3-201ENST00000600888 ITLN2Q8WWU7 325 aaPredicted RBP3.06□□□□□ -1.92
CKS1BP3-201ENST00000600888 IFT81Q8WYA0 676 aa3.06□□□□□ -1.92
CKS1BP3-201ENST00000600888 ROBO4Q8WZ75 1007 aa3.06□□□□□ -1.92
CKS1BP3-201ENST00000600888 EXT2Q93063 718 aa3.06□□□□□ -1.92
CKS1BP3-201ENST00000600888 NTNG2Q96CW9 530 aa3.06□□□□□ -1.92
CKS1BP3-201ENST00000600888 CCDC126Q96EE4 140 aa3.06□□□□□ -1.92
CKS1BP3-201ENST00000600888 L3HYPDHQ96EM0 354 aa3.06□□□□□ -1.92
CKS1BP3-201ENST00000600888 C11orf24Q96F05 449 aaPredicted RBP3.06□□□□□ -1.92
CKS1BP3-201ENST00000600888 OTUB1Q96FW1 271 aaPredicted RBP3.06□□□□□ -1.92
CKS1BP3-201ENST00000600888 RBM18Q96H35 190 aaKnown RBP3.06□□□□□ -1.92
CKS1BP3-201ENST00000600888 SPG11Q96JI7 2443 aa3.06□□□□□ -1.92
CKS1BP3-201ENST00000600888 RASL10BQ96S79 203 aa3.06□□□□□ -1.92
CKS1BP3-201ENST00000600888 ZNF382Q96SR6 550 aa3.06□□□□□ -1.92
CKS1BP3-201ENST00000600888 SECISBP2Q96T21 854 aaKnown RBP3.06□□□□□ -1.92
CKS1BP3-201ENST00000600888 ERVK-6Q9BXR3 956 aa3.06□□□□□ -1.92
CKS1BP3-201ENST00000600888 HES7Q9BYE0 225 aa3.06□□□□□ -1.92
CKS1BP3-201ENST00000600888 PRRG4Q9BZD6 226 aa3.06□□□□□ -1.92
CKS1BP3-201ENST00000600888 SHCBP1LQ9BZQ2 653 aa3.06□□□□□ -1.92
CKS1BP3-201ENST00000600888 ZDHHC11Q9H8X9 412 aa3.06□□□□□ -1.92
CKS1BP3-201ENST00000600888 WDR41Q9HAD4 459 aa3.06□□□□□ -1.92
CKS1BP3-201ENST00000600888 KIAA1549Q9HCM3 1950 aa3.06□□□□□ -1.92
CKS1BP3-201ENST00000600888 SH2D2AQ9NP31 389 aa3.06□□□□□ -1.92
CKS1BP3-201ENST00000600888 CHST11Q9NPF2 352 aa3.06□□□□□ -1.92
CKS1BP3-201ENST00000600888 PNO1Q9NRX1 252 aaKnown RBP3.06□□□□□ -1.92
CKS1BP3-201ENST00000600888 MAN2C1Q9NTJ4 1040 aa3.06□□□□□ -1.92
CKS1BP3-201ENST00000600888 NMRK1Q9NWW6 199 aa3.06□□□□□ -1.92
CKS1BP3-201ENST00000600888 HPF1Q9NWY4 346 aa3.06□□□□□ -1.92
CKS1BP3-201ENST00000600888 QPCTLQ9NXS2 382 aa3.06□□□□□ -1.92
CKS1BP3-201ENST00000600888 AHSPQ9NZD4 102 aa3.06□□□□□ -1.92
CKS1BP3-201ENST00000600888 TMEM216Q9P0N5 145 aa3.06□□□□□ -1.92
CKS1BP3-201ENST00000600888 COPS7AQ9UBW8 275 aa3.06□□□□□ -1.92
CKS1BP3-201ENST00000600888 DCDC2Q9UHG0 476 aa3.06□□□□□ -1.92
CKS1BP3-201ENST00000600888 ZNF225Q9UK10 706 aa3.06□□□□□ -1.92
CKS1BP3-201ENST00000600888 FBXW2Q9UKT8 454 aa3.06□□□□□ -1.92
CKS1BP3-201ENST00000600888 CES1P1Q9UKY3 287 aa3.06□□□□□ -1.92
CKS1BP3-201ENST00000600888 SNX6Q9UNH7 406 aa3.06□□□□□ -1.92
CKS1BP3-201ENST00000600888 ENTPD4Q9Y227 616 aa3.06□□□□□ -1.92
CKS1BP3-201ENST00000600888 STK38LQ9Y2H1 464 aa3.06□□□□□ -1.92
CKS1BP3-201ENST00000600888 RNF11Q9Y3C5 154 aa3.06□□□□□ -1.92
CKS1BP3-201ENST00000600888 ATG4BQ9Y4P1 393 aa3.06□□□□□ -1.92
CKS1BP3-201ENST00000600888 TACC2O95359 2948 aa3.06□□□□□ -1.92
CKS1BP3-201ENST00000600888 PDZD2O15018 2839 aa3.06□□□□□ -1.92
CKS1BP3-201ENST00000600888 CCDC168Q8NDH2 2452 aa3.05□□□□□ -1.92
CKS1BP3-201ENST00000600888 ABCA4P78363 2273 aa3.05□□□□□ -1.92
CKS1BP3-201ENST00000600888 HEATR5AQ86XA9 2040 aa3.05□□□□□ -1.92
CKS1BP3-201ENST00000600888 IGLV7-46A0A075B6I9 117 aa3.05□□□□□ -1.92
CKS1BP3-201ENST00000600888 TRGV8A0A0C4DH27 118 aa3.05□□□□□ -1.92
CKS1BP3-201ENST00000600888 NPIPA5E9PKD4 350 aa3.05□□□□□ -1.92
CKS1BP3-201ENST00000600888 H7C423 109 aa3.05□□□□□ -1.92
CKS1BP3-201ENST00000600888 SAP18O00422 153 aaKnown RBP3.05□□□□□ -1.92
CKS1BP3-201ENST00000600888 CCL21O00585 134 aa3.05□□□□□ -1.92
CKS1BP3-201ENST00000600888 ZNF195O14628 629 aa3.05□□□□□ -1.92
CKS1BP3-201ENST00000600888 PLOD3O60568 738 aa3.05□□□□□ -1.92
CKS1BP3-201ENST00000600888 ZNF354AO60765 605 aaPredicted RBP3.05□□□□□ -1.92
CKS1BP3-201ENST00000600888 DIAPH2O60879 1101 aa3.05□□□□□ -1.92
CKS1BP3-201ENST00000600888 CDH16O75309 829 aa3.05□□□□□ -1.92
CKS1BP3-201ENST00000600888 EEDO75530 441 aaKnown RBP3.05□□□□□ -1.92
CKS1BP3-201ENST00000600888 OR2J2O76002 312 aa3.05□□□□□ -1.92
CKS1BP3-201ENST00000600888 OR6B1O95007 311 aa3.05□□□□□ -1.92
CKS1BP3-201ENST00000600888 OR4F21O95013 312 aa3.05□□□□□ -1.92
CKS1BP3-201ENST00000600888 AIFM1O95831 613 aa3.05□□□□□ -1.92
CKS1BP3-201ENST00000600888 PDYNP01213 254 aa3.05□□□□□ -1.92
CKS1BP3-201ENST00000600888 KRT6AP02538 564 aa3.05□□□□□ -1.92
CKS1BP3-201ENST00000600888 CLPSP04118 112 aa3.05□□□□□ -1.92
CKS1BP3-201ENST00000600888 KRT6BP04259 564 aa3.05□□□□□ -1.92
CKS1BP3-201ENST00000600888 IFNA16P05015 189 aa3.05□□□□□ -1.92
CKS1BP3-201ENST00000600888 ATP1B1P05026 303 aa3.05□□□□□ -1.92
CKS1BP3-201ENST00000600888 HOXD4P09016 255 aaPredicted RBP3.05□□□□□ -1.92
CKS1BP3-201ENST00000600888 IFI6P09912 130 aa3.05□□□□□ -1.92
CKS1BP3-201ENST00000600888 CPMP14384 443 aa3.05□□□□□ -1.92
CKS1BP3-201ENST00000600888 TNNI3P19429 210 aa3.05□□□□□ -1.92
CKS1BP3-201ENST00000600888 TAC1P20366 129 aa3.05□□□□□ -1.92
CKS1BP3-201ENST00000600888 PIK3R1P27986 724 aa3.05□□□□□ -1.92
CKS1BP3-201ENST00000600888 SOX3P41225 446 aa3.05□□□□□ -1.92
CKS1BP3-201ENST00000600888 KRT6CP48668 564 aa3.05□□□□□ -1.92
CKS1BP3-201ENST00000600888 SMSP52788 366 aa3.05□□□□□ -1.92
CKS1BP3-201ENST00000600888 PKNOX1P55347 436 aa3.05□□□□□ -1.92
CKS1BP3-201ENST00000600888 PAX9P55771 341 aa3.05□□□□□ -1.92
CKS1BP3-201ENST00000600888 DNAJB13P59910 316 aa3.05□□□□□ -1.92
CKS1BP3-201ENST00000600888 LCP2Q13094 533 aa3.05□□□□□ -1.92
CKS1BP3-201ENST00000600888 IFT88Q13099 833 aa3.05□□□□□ -1.92
CKS1BP3-201ENST00000600888 DDX39BQ13838 428 aaKnown RBP3.05□□□□□ -1.92
CKS1BP3-201ENST00000600888 EBPQ15125 230 aaKnown RBP3.05□□□□□ -1.92
CKS1BP3-201ENST00000600888 CEBPEQ15744 281 aa3.05□□□□□ -1.92
CKS1BP3-201ENST00000600888 NPTX1Q15818 432 aa3.05□□□□□ -1.92
CKS1BP3-201ENST00000600888 C3AR1Q16581 482 aa3.05□□□□□ -1.92
CKS1BP3-201ENST00000600888 ZNF630Q2M218 657 aaPredicted RBP3.05□□□□□ -1.92
CKS1BP3-201ENST00000600888 UNC50Q53HI1 259 aa3.05□□□□□ -1.92
CKS1BP3-201ENST00000600888 SPIN4Q56A73 249 aa3.05□□□□□ -1.92
CKS1BP3-201ENST00000600888 CMPK2Q5EBM0 449 aa3.05□□□□□ -1.92
CKS1BP3-201ENST00000600888 ZNF678Q5SXM1 525 aa3.05□□□□□ -1.92
CKS1BP3-201ENST00000600888 LCE1EQ5T753 118 aa3.05□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms