RNA–Protein interactions for RNA: ENST00000543627.1

DDB1-222, Transcript of damage specific DNA binding protein 1, human

TSL 5

Gene DDB1, Length 540 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-222	ENST00000543627	CLDN22	Q8N7P3	220 aa		9.63	□□□□□ -0.87
DDB1-222	ENST00000543627	NOXO1	Q8NFA2	376 aa		9.63	□□□□□ -0.87
DDB1-222	ENST00000543627	MAGEE2	Q8TD90	523 aa	Predicted RBP	9.63	□□□□□ -0.87
DDB1-222	ENST00000543627	LIPH	Q8WWY8	451 aa		9.63	□□□□□ -0.87
DDB1-222	ENST00000543627	NANOS1	Q8WY41	292 aa	Known RBP	9.63	□□□□□ -0.87
DDB1-222	ENST00000543627	HDAC2	Q92769	488 aa	Known RBP	9.63	□□□□□ -0.87
DDB1-222	ENST00000543627	MBD6	Q96DN6	1003 aa		9.63	□□□□□ -0.87
DDB1-222	ENST00000543627	FBXO17	Q96EF6	278 aa		9.63	□□□□□ -0.87
DDB1-222	ENST00000543627	RBP7	Q96R05	134 aa		9.63	□□□□□ -0.87
DDB1-222	ENST00000543627	KATNB1	Q9BVA0	655 aa		9.63	□□□□□ -0.87
DDB1-222	ENST00000543627	NDEL1	Q9GZM8	345 aa		9.63	□□□□□ -0.87
DDB1-222	ENST00000543627	KCNN2	Q9H2S1	579 aa		9.63	□□□□□ -0.87
DDB1-222	ENST00000543627	TXNIP	Q9H3M7	391 aa		9.63	□□□□□ -0.87
DDB1-222	ENST00000543627	NELFA	Q9H3P2	528 aa		9.63	□□□□□ -0.87
DDB1-222	ENST00000543627	ANKRD19P	Q9H560	264 aa		9.63	□□□□□ -0.87
DDB1-222	ENST00000543627	HEATR1	Q9H583	2144 aa	Known RBP	9.63	□□□□□ -0.87
DDB1-222	ENST00000543627	FAIM	Q9NVQ4	179 aa		9.63	□□□□□ -0.87
DDB1-222	ENST00000543627	HIF3A	Q9Y2N7	669 aa		9.63	□□□□□ -0.87
DDB1-222	ENST00000543627	ARPC4-TTLL3	A0A0A6YYG9	625 aa		9.62	□□□□□ -0.87
DDB1-222	ENST00000543627		A0A1W2PPL8	197 aa		9.62	□□□□□ -0.87
DDB1-222	ENST00000543627	HTR3E	A5X5Y0	456 aa		9.62	□□□□□ -0.87
DDB1-222	ENST00000543627	TNFRSF11B	O00300	401 aa		9.62	□□□□□ -0.87
DDB1-222	ENST00000543627	XKRY	O14609	159 aa		9.62	□□□□□ -0.87
DDB1-222	ENST00000543627	IGF2	P01344	180 aa		9.62	□□□□□ -0.87
DDB1-222	ENST00000543627	CD99	P14209	185 aa		9.62	□□□□□ -0.87
DDB1-222	ENST00000543627	HOXB1	P14653	301 aa	Predicted RBP	9.62	□□□□□ -0.87
DDB1-222	ENST00000543627	CBR1	P16152	277 aa		9.62	□□□□□ -0.87
DDB1-222	ENST00000543627	GIPR	P48546	466 aa		9.62	□□□□□ -0.87
DDB1-222	ENST00000543627	PTH2R	P49190	550 aa		9.62	□□□□□ -0.87
DDB1-222	ENST00000543627	ADAM8	P78325	824 aa		9.62	□□□□□ -0.87
DDB1-222	ENST00000543627	RAB39A	Q14964	217 aa		9.62	□□□□□ -0.87
DDB1-222	ENST00000543627	TESK1	Q15569	626 aa		9.62	□□□□□ -0.87
DDB1-222	ENST00000543627	GSG1	Q2KHT4	349 aa		9.62	□□□□□ -0.87
DDB1-222	ENST00000543627	PGGHG	Q32M88	737 aa		9.62	□□□□□ -0.87
DDB1-222	ENST00000543627	DNAL1	Q4LDG9	190 aa		9.62	□□□□□ -0.87
DDB1-222	ENST00000543627	FAM98B	Q52LJ0	330 aa	Known RBP	9.62	□□□□□ -0.87
DDB1-222	ENST00000543627		Q5PR19	223 aa		9.62	□□□□□ -0.87
DDB1-222	ENST00000543627	ARMC4	Q5T2S8	1044 aa		9.62	□□□□□ -0.87
DDB1-222	ENST00000543627	KRT80	Q6KB66	452 aa		9.62	□□□□□ -0.87
DDB1-222	ENST00000543627	TMPRSS11F	Q6ZWK6	438 aa		9.62	□□□□□ -0.87
DDB1-222	ENST00000543627	SLC16A14	Q7RTX9	510 aa		9.62	□□□□□ -0.87
DDB1-222	ENST00000543627	YTHDF3	Q7Z739	585 aa	Known RBP	9.62	□□□□□ -0.87
DDB1-222	ENST00000543627	SPATA24	Q86W54	205 aa		9.62	□□□□□ -0.87
DDB1-222	ENST00000543627	MUC15	Q8N387	334 aa		9.62	□□□□□ -0.87
DDB1-222	ENST00000543627	WFDC11	Q8NEX6	87 aa		9.62	□□□□□ -0.87
DDB1-222	ENST00000543627	TRMT61A	Q96FX7	289 aa	Known RBP	9.62	□□□□□ -0.87
DDB1-222	ENST00000543627	MS4A3	Q96HJ5	214 aa		9.62	□□□□□ -0.87
DDB1-222	ENST00000543627	RSRC1	Q96IZ7	334 aa	Known RBP	9.62	□□□□□ -0.87
DDB1-222	ENST00000543627		Q96M85	177 aa		9.62	□□□□□ -0.87
DDB1-222	ENST00000543627	FOXN4	Q96NZ1	517 aa		9.62	□□□□□ -0.87
DDB1-222	ENST00000543627	TSPAN32	Q96QS1	320 aa		9.62	□□□□□ -0.87
DDB1-222	ENST00000543627	DHRS9	Q9BPW9	319 aa		9.62	□□□□□ -0.87
DDB1-222	ENST00000543627	BTBD10	Q9BSF8	475 aa		9.62	□□□□□ -0.87
DDB1-222	ENST00000543627	C1orf21	Q9H246	121 aa		9.62	□□□□□ -0.87
DDB1-222	ENST00000543627	OR51B6	Q9H340	312 aa		9.62	□□□□□ -0.87
DDB1-222	ENST00000543627	IL1RAP	Q9NPH3	570 aa		9.62	□□□□□ -0.87
DDB1-222	ENST00000543627	STX18	Q9P2W9	335 aa	Known RBP	9.62	□□□□□ -0.87
DDB1-222	ENST00000543627	ADAM18	Q9Y3Q7	739 aa		9.62	□□□□□ -0.87
DDB1-222	ENST00000543627	IER3IP1	Q9Y5U9	82 aa		9.62	□□□□□ -0.87
DDB1-222	ENST00000543627		U3KQV3	271 aa		9.62	□□□□□ -0.87
DDB1-222	ENST00000543627	OTOG	Q6ZRI0	2925 aa		9.62	□□□□□ -0.87
DDB1-222	ENST00000543627	AKAP9	Q99996	3911 aa		9.62	□□□□□ -0.87
DDB1-222	ENST00000543627	SH3PXD2B	A1X283	911 aa		9.61	□□□□□ -0.87
DDB1-222	ENST00000543627	SOCS2	O14508	198 aa		9.61	□□□□□ -0.87
DDB1-222	ENST00000543627	GNGT2	O14610	69 aa		9.61	□□□□□ -0.87
DDB1-222	ENST00000543627	SMAD7	O15105	426 aa	Known RBP	9.61	□□□□□ -0.87
DDB1-222	ENST00000543627	UBL3	O95164	117 aa		9.61	□□□□□ -0.87
DDB1-222	ENST00000543627	NDUFB2	O95178	105 aa		9.61	□□□□□ -0.87
DDB1-222	ENST00000543627	SEMG1	P04279	462 aa		9.61	□□□□□ -0.87
DDB1-222	ENST00000543627	CCNO	P22674	350 aa		9.61	□□□□□ -0.87
DDB1-222	ENST00000543627	CALCR	P30988	508 aa		9.61	□□□□□ -0.87
DDB1-222	ENST00000543627	TTK	P33981	857 aa		9.61	□□□□□ -0.87
DDB1-222	ENST00000543627	ARR3	P36575	388 aa		9.61	□□□□□ -0.87
DDB1-222	ENST00000543627	IFNGR2	P38484	337 aa		9.61	□□□□□ -0.87
DDB1-222	ENST00000543627	OMP	P47874	163 aa		9.61	□□□□□ -0.87
DDB1-222	ENST00000543627	NAAA	Q02083	359 aa		9.61	□□□□□ -0.87
DDB1-222	ENST00000543627	FXN	Q16595	210 aa		9.61	□□□□□ -0.87
DDB1-222	ENST00000543627	MTX3	Q5HYI7	312 aa		9.61	□□□□□ -0.87
DDB1-222	ENST00000543627	TMEM53	Q6P2H8	277 aa		9.61	□□□□□ -0.87
DDB1-222	ENST00000543627	PIWIL3	Q7Z3Z3	882 aa	Known RBP	9.61	□□□□□ -0.87
DDB1-222	ENST00000543627	ZSCAN2	Q7Z7L9	614 aa	Predicted RBP	9.61	□□□□□ -0.87
DDB1-222	ENST00000543627	MYPOP	Q86VE0	399 aa	Predicted RBP	9.61	□□□□□ -0.87
DDB1-222	ENST00000543627	CCDC36	Q8IYA8	594 aa		9.61	□□□□□ -0.87
DDB1-222	ENST00000543627	LRRC75A	Q8NAA5	344 aa		9.61	□□□□□ -0.87
DDB1-222	ENST00000543627	FGFBP3	Q8TAT2	258 aa		9.61	□□□□□ -0.87
DDB1-222	ENST00000543627	GNPDA2	Q8TDQ7	276 aa		9.61	□□□□□ -0.87
DDB1-222	ENST00000543627	RASD2	Q96D21	266 aa		9.61	□□□□□ -0.87
DDB1-222	ENST00000543627		Q96MF0	132 aa		9.61	□□□□□ -0.87
DDB1-222	ENST00000543627	ZNF570	Q96NI8	536 aa		9.61	□□□□□ -0.87
DDB1-222	ENST00000543627	TRIM15	Q9C019	465 aa		9.61	□□□□□ -0.87
DDB1-222	ENST00000543627	MUC13	Q9H3R2	512 aa		9.61	□□□□□ -0.87
DDB1-222	ENST00000543627	DENND2D	Q9H6A0	471 aa	Predicted RBP	9.61	□□□□□ -0.87
DDB1-222	ENST00000543627	NOX3	Q9HBY0	568 aa		9.61	□□□□□ -0.87
DDB1-222	ENST00000543627	CCNB1IP1	Q9NPC3	277 aa		9.61	□□□□□ -0.87
DDB1-222	ENST00000543627	TMEM38B	Q9NVV0	291 aa		9.61	□□□□□ -0.87
DDB1-222	ENST00000543627	CAD	P27708	2225 aa		9.61	□□□□□ -0.87
DDB1-222	ENST00000543627	MAP1A	P78559	2803 aa	Predicted RBP	9.6	□□□□□ -0.87
DDB1-222	ENST00000543627	IGKV1D-43	A0A0B4J1Z2	117 aa		9.6	□□□□□ -0.87
DDB1-222	ENST00000543627	TEX13C	A0A0J9YWL9	993 aa		9.6	□□□□□ -0.87
DDB1-222	ENST00000543627	TCRBV5S2	A0A599	114 aa		9.6	□□□□□ -0.87

Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms