RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 ZNF736B4DX44 427 aaPredicted RBP11.71□□□□□ -0.54
SFSWAP-209ENST00000540469 ZNF208O43345 1280 aa11.71□□□□□ -0.54
SFSWAP-209ENST00000540469 SRPX2O60687 465 aaPredicted RBP11.71□□□□□ -0.54
SFSWAP-209ENST00000540469 ZNF888P0CJ79 500 aaPredicted RBP11.71□□□□□ -0.54
SFSWAP-209ENST00000540469 ZNF14P17017 642 aaPredicted RBP11.71□□□□□ -0.54
SFSWAP-209ENST00000540469 EXOSC7Q15024 291 aaKnown RBP11.71□□□□□ -0.54
SFSWAP-209ENST00000540469 SMAD2Q15796 467 aaKnown RBP11.71□□□□□ -0.54
SFSWAP-209ENST00000540469 DHRS7BQ6IAN0 325 aaPredicted RBP11.71□□□□□ -0.54
SFSWAP-209ENST00000540469 OR4E2Q8NGC2 313 aa11.71□□□□□ -0.54
SFSWAP-209ENST00000540469 ZPLD1Q8TCW7 415 aa11.71□□□□□ -0.54
SFSWAP-209ENST00000540469 ASB13Q8WXK3 278 aa11.71□□□□□ -0.54
SFSWAP-209ENST00000540469 OR8D1Q8WZ84 308 aa11.71□□□□□ -0.54
SFSWAP-209ENST00000540469 C14orf79Q96F83 325 aa11.71□□□□□ -0.54
SFSWAP-209ENST00000540469 INSM2Q96T92 566 aaPredicted RBP11.71□□□□□ -0.54
SFSWAP-209ENST00000540469 ZNF251Q9BRH9 671 aa11.71□□□□□ -0.54
SFSWAP-209ENST00000540469 TINAGQ9UJW2 476 aa11.71□□□□□ -0.54
SFSWAP-209ENST00000540469 AKR1C3P42330 323 aa11.7□□□□□ -0.54
SFSWAP-209ENST00000540469 SRSF3P84103 164 aaKnown RBP11.7□□□□□ -0.54
SFSWAP-209ENST00000540469 COL19A1Q14993 1142 aa11.7□□□□□ -0.54
SFSWAP-209ENST00000540469 C3orf33Q6P1S2 294 aa11.7□□□□□ -0.54
SFSWAP-209ENST00000540469 ANKRD16Q6P6B7 361 aa11.7□□□□□ -0.54
SFSWAP-209ENST00000540469 NAA40Q86UY6 237 aa11.7□□□□□ -0.54
SFSWAP-209ENST00000540469 OR10AC1Q8NH08 325 aa11.7□□□□□ -0.54
SFSWAP-209ENST00000540469 RNF141Q8WVD5 230 aa11.7□□□□□ -0.54
SFSWAP-209ENST00000540469 ARRDC3Q96B67 414 aa11.7□□□□□ -0.54
SFSWAP-209ENST00000540469 MRGPRX3Q96LB0 322 aa11.7□□□□□ -0.54
SFSWAP-209ENST00000540469 ZDHHC4Q9NPG8 344 aa11.7□□□□□ -0.54
SFSWAP-209ENST00000540469 GSN-AS1Q9NRJ2 163 aa11.7□□□□□ -0.54
SFSWAP-209ENST00000540469 LDB3O75112 727 aa11.7□□□□□ -0.54
SFSWAP-209ENST00000540469 S100A8P05109 93 aa11.7□□□□□ -0.54
SFSWAP-209ENST00000540469 ADRB3P13945 408 aa11.7□□□□□ -0.54
SFSWAP-209ENST00000540469 PGAM2P15259 253 aa11.7□□□□□ -0.54
SFSWAP-209ENST00000540469 PPT1P50897 306 aa11.7□□□□□ -0.54
SFSWAP-209ENST00000540469 IL13RA1P78552 427 aa11.7□□□□□ -0.54
SFSWAP-209ENST00000540469 METRNLQ641Q3 311 aa11.7□□□□□ -0.54
SFSWAP-209ENST00000540469 FAM109BQ6ICB4 259 aaPredicted RBP11.7□□□□□ -0.54
SFSWAP-209ENST00000540469 TMEM200AQ86VY9 491 aa11.7□□□□□ -0.54
SFSWAP-209ENST00000540469 GALNT16Q8N428 558 aa11.7□□□□□ -0.54
SFSWAP-209ENST00000540469 SP7Q8TDD2 431 aaPredicted RBP11.7□□□□□ -0.54
SFSWAP-209ENST00000540469 GPR148Q8TDV2 347 aa11.7□□□□□ -0.54
SFSWAP-209ENST00000540469 FGF13Q92913 245 aa11.7□□□□□ -0.54
SFSWAP-209ENST00000540469 SLC25A21Q9BQT8 299 aaPredicted RBP11.7□□□□□ -0.54
SFSWAP-209ENST00000540469 OR1A2Q9Y585 309 aa11.7□□□□□ -0.54
SFSWAP-209ENST00000540469 HLA-DQA2P01906 255 aa11.7□□□□□ -0.54
SFSWAP-209ENST00000540469 H2AFB1P0C5Y9 115 aa11.7□□□□□ -0.54
SFSWAP-209ENST00000540469 SMIM6P0DI80 62 aa11.7□□□□□ -0.54
SFSWAP-209ENST00000540469 AKR1C4P17516 323 aa11.7□□□□□ -0.54
SFSWAP-209ENST00000540469 CMPK1P30085 196 aa11.7□□□□□ -0.54
SFSWAP-209ENST00000540469 AVPR2P30518 371 aa11.7□□□□□ -0.54
SFSWAP-209ENST00000540469 CDNFQ49AH0 187 aa11.7□□□□□ -0.54
SFSWAP-209ENST00000540469 C9orf152Q5JTZ5 239 aa11.7□□□□□ -0.54
SFSWAP-209ENST00000540469 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.7□□□□□ -0.54
SFSWAP-209ENST00000540469 FAM3DQ96BQ1 224 aa11.7□□□□□ -0.54
SFSWAP-209ENST00000540469 FOXRED1Q96CU9 486 aaPredicted RBP11.7□□□□□ -0.54
SFSWAP-209ENST00000540469 KXD1Q9BQD3 176 aa11.7□□□□□ -0.54
SFSWAP-209ENST00000540469 POM121BA6NF01 834 aa11.69□□□□□ -0.54
SFSWAP-209ENST00000540469 ZNF345Q14585 488 aa11.69□□□□□ -0.54
SFSWAP-209ENST00000540469 TCTN1Q2MV58 587 aa11.69□□□□□ -0.54
SFSWAP-209ENST00000540469 EIF2S3LQ2VIR3 472 aaKnown RBP11.69□□□□□ -0.54
SFSWAP-209ENST00000540469 FAM76BQ5HYJ3 339 aa11.69□□□□□ -0.54
SFSWAP-209ENST00000540469 PLPP7Q8NBV4 271 aa11.69□□□□□ -0.54
SFSWAP-209ENST00000540469 OR51A4Q8NGJ6 313 aa11.69□□□□□ -0.54
SFSWAP-209ENST00000540469 FAM117AQ9C073 453 aa11.69□□□□□ -0.54
SFSWAP-209ENST00000540469 SFXN1Q9H9B4 322 aa11.69□□□□□ -0.54
SFSWAP-209ENST00000540469 DHCR7Q9UBM7 475 aaKnown RBP11.69□□□□□ -0.54
SFSWAP-209ENST00000540469 MIOXQ9UGB7 285 aa11.69□□□□□ -0.54
SFSWAP-209ENST00000540469 CHRNA9Q9UGM1 479 aa11.69□□□□□ -0.54
SFSWAP-209ENST00000540469 KCNE5Q9UJ90 142 aa11.69□□□□□ -0.54
SFSWAP-209ENST00000540469 PLXNA2O75051 1894 aa11.69□□□□□ -0.54
SFSWAP-209ENST00000540469 RNF222A6NCQ9 220 aa11.69□□□□□ -0.54
SFSWAP-209ENST00000540469 TGM5O43548 720 aa11.69□□□□□ -0.54
SFSWAP-209ENST00000540469 MAP3K8P41279 467 aa11.69□□□□□ -0.54
SFSWAP-209ENST00000540469 TM4SF4P48230 202 aa11.69□□□□□ -0.54
SFSWAP-209ENST00000540469 CXADRP78310 365 aa11.69□□□□□ -0.54
SFSWAP-209ENST00000540469 INPP5JQ15735 1006 aaPredicted RBP11.69□□□□□ -0.54
SFSWAP-209ENST00000540469 MICBQ29980 383 aa11.69□□□□□ -0.54
SFSWAP-209ENST00000540469 C2orf76Q3KRA6 126 aa11.69□□□□□ -0.54
SFSWAP-209ENST00000540469 ATPAF1Q5TC12 328 aaPredicted RBP11.69□□□□□ -0.54
SFSWAP-209ENST00000540469 NKAIN2Q5VXU1 208 aa11.69□□□□□ -0.54
SFSWAP-209ENST00000540469 SAMD14Q8IZD0 417 aaPredicted RBP11.69□□□□□ -0.54
SFSWAP-209ENST00000540469 CCDC74AQ96AQ1 378 aa11.69□□□□□ -0.54
SFSWAP-209ENST00000540469 C3orf49Q96BT1 292 aa11.69□□□□□ -0.54
SFSWAP-209ENST00000540469 ARL5BQ96KC2 179 aa11.69□□□□□ -0.54
SFSWAP-209ENST00000540469 MICU1Q9BPX6 476 aa11.69□□□□□ -0.54
SFSWAP-209ENST00000540469 WDR77Q9BQA1 342 aaPredicted RBP11.69□□□□□ -0.54
SFSWAP-209ENST00000540469 SELENOIQ9C0D9 397 aa11.69□□□□□ -0.54
SFSWAP-209ENST00000540469 SYT4Q9H2B2 425 aa11.69□□□□□ -0.54
SFSWAP-209ENST00000540469 UQCC1Q9NVA1 299 aa11.69□□□□□ -0.54
SFSWAP-209ENST00000540469 FLRT3Q9NZU0 649 aa11.69□□□□□ -0.54
SFSWAP-209ENST00000540469 H7C1C5 153 aa11.69□□□□□ -0.54
SFSWAP-209ENST00000540469 WNT11O96014 354 aa11.69□□□□□ -0.54
SFSWAP-209ENST00000540469 NGFRP08138 427 aa11.69□□□□□ -0.54
SFSWAP-209ENST00000540469 ERGP11308 486 aa11.69□□□□□ -0.54
SFSWAP-209ENST00000540469 LCN6P62502 163 aa11.69□□□□□ -0.54
SFSWAP-209ENST00000540469 KRBOX4Q5JUW0 171 aa11.69□□□□□ -0.54
SFSWAP-209ENST00000540469 LPCAT3Q6P1A2 487 aa11.69□□□□□ -0.54
SFSWAP-209ENST00000540469 ZNF584Q8IVC4 421 aa11.69□□□□□ -0.54
SFSWAP-209ENST00000540469 TMEFF1Q8IYR6 380 aa11.69□□□□□ -0.54
SFSWAP-209ENST00000540469 CLEC1AQ8NC01 280 aa11.69□□□□□ -0.54
SFSWAP-209ENST00000540469 OR4K17Q8NGC6 315 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms