RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 ERICH5Q6P6B1 374 aa16.55■□□□□ 0.24
CCDC28A-203ENST00000617445 HIST3H2AQ7L7L0 130 aa16.55■□□□□ 0.24
CCDC28A-203ENST00000617445 SLC46A3Q7Z3Q1 461 aa16.55■□□□□ 0.24
CCDC28A-203ENST00000617445 NANOS1Q8WY41 292 aaKnown RBP16.55■□□□□ 0.24
CCDC28A-203ENST00000617445 HIST1H2ACQ93077 130 aa16.55■□□□□ 0.24
CCDC28A-203ENST00000617445 TXNDC15Q96J42 360 aa16.55■□□□□ 0.24
CCDC28A-203ENST00000617445 ULBP2Q9BZM5 246 aa16.55■□□□□ 0.24
CCDC28A-203ENST00000617445 POLR2J2Q9GZM3 115 aaKnown RBP16.55■□□□□ 0.24
CCDC28A-203ENST00000617445 POLR2J3Q9H1A7 115 aaKnown RBP16.55■□□□□ 0.24
CCDC28A-203ENST00000617445 NANSQ9NR45 359 aa16.55■□□□□ 0.24
CCDC28A-203ENST00000617445 YAE1D1Q9NRH1 226 aa16.55■□□□□ 0.24
CCDC28A-203ENST00000617445 MED29Q9NX70 200 aa16.55■□□□□ 0.24
CCDC28A-203ENST00000617445 B3GNT2Q9NY97 397 aa16.55■□□□□ 0.24
CCDC28A-203ENST00000617445 ZNF229Q9UJW7 825 aa16.55■□□□□ 0.24
CCDC28A-203ENST00000617445 FBXL3Q9UKT7 428 aa16.55■□□□□ 0.24
CCDC28A-203ENST00000617445 BAG5Q9UL15 447 aa16.55■□□□□ 0.24
CCDC28A-203ENST00000617445 SLC7A7Q9UM01 511 aa16.55■□□□□ 0.24
CCDC28A-203ENST00000617445 IGHV2OR16-5A0A0B4J2B6 119 aa16.54■□□□□ 0.24
CCDC28A-203ENST00000617445 A8MV72 311 aaPredicted RBP16.54■□□□□ 0.24
CCDC28A-203ENST00000617445 LYPD3O95274 346 aa16.54■□□□□ 0.24
CCDC28A-203ENST00000617445 CAPZA2P47755 286 aa16.54■□□□□ 0.24
CCDC28A-203ENST00000617445 PPOXP50336 477 aa16.54■□□□□ 0.24
CCDC28A-203ENST00000617445 IDH3GP51553 393 aaPredicted RBP16.54■□□□□ 0.24
CCDC28A-203ENST00000617445 HGFACQ04756 655 aa16.54■□□□□ 0.24
CCDC28A-203ENST00000617445 CAMK2DQ13557 499 aa16.54■□□□□ 0.24
CCDC28A-203ENST00000617445 TMEM249Q2WGJ8 235 aa16.54■□□□□ 0.24
CCDC28A-203ENST00000617445 PHYHD1Q5SRE7 291 aa16.54■□□□□ 0.24
CCDC28A-203ENST00000617445 ZNF813Q6ZN06 617 aa16.54■□□□□ 0.24
CCDC28A-203ENST00000617445 MDP1Q86V88 176 aa16.54■□□□□ 0.24
CCDC28A-203ENST00000617445 CALHM3Q86XJ0 350 aa16.54■□□□□ 0.24
CCDC28A-203ENST00000617445 HIPK1Q86Z02 1210 aa16.54■□□□□ 0.24
CCDC28A-203ENST00000617445 PCYOX1LQ8NBM8 494 aa16.54■□□□□ 0.24
CCDC28A-203ENST00000617445 OR6X1Q8NH79 312 aa16.54■□□□□ 0.24
CCDC28A-203ENST00000617445 VANGL1Q8TAA9 524 aaPredicted RBP16.54■□□□□ 0.24
CCDC28A-203ENST00000617445 HTRA1Q92743 480 aa16.54■□□□□ 0.24
CCDC28A-203ENST00000617445 ZNF426Q9BUY5 554 aa16.54■□□□□ 0.24
CCDC28A-203ENST00000617445 COL6A5A8TX70 2615 aa16.54■□□□□ 0.24
CCDC28A-203ENST00000617445 LRRN3E7EW58 273 aa16.53■□□□□ 0.24
CCDC28A-203ENST00000617445 CH25HO95992 272 aa16.53■□□□□ 0.24
CCDC28A-203ENST00000617445 ERCC1P07992 297 aaPredicted RBP16.53■□□□□ 0.24
CCDC28A-203ENST00000617445 NPR2P20594 1047 aa16.53■□□□□ 0.24
CCDC28A-203ENST00000617445 USF1P22415 310 aaPredicted RBP16.53■□□□□ 0.24
CCDC28A-203ENST00000617445 CSNK1A1P48729 337 aa16.53■□□□□ 0.24
CCDC28A-203ENST00000617445 NPRL3Q12980 569 aa16.53■□□□□ 0.24
CCDC28A-203ENST00000617445 KLF10Q13118 480 aa16.53■□□□□ 0.24
CCDC28A-203ENST00000617445 GSG1Q2KHT4 349 aa16.53■□□□□ 0.24
CCDC28A-203ENST00000617445 VHLLQ6RSH7 139 aa16.53■□□□□ 0.24
CCDC28A-203ENST00000617445 WDR88Q6ZMY6 472 aa16.53■□□□□ 0.24
CCDC28A-203ENST00000617445 SLC35D2Q76EJ3 337 aa16.53■□□□□ 0.24
CCDC28A-203ENST00000617445 PIWIL3Q7Z3Z3 882 aaKnown RBP16.53■□□□□ 0.24
CCDC28A-203ENST00000617445 RBM45Q8IUH3 476 aaKnown RBP16.53■□□□□ 0.24
CCDC28A-203ENST00000617445 ZNF540Q8NDQ6 660 aa16.53■□□□□ 0.24
CCDC28A-203ENST00000617445 OR4D11Q8NGI4 311 aa16.53■□□□□ 0.24
CCDC28A-203ENST00000617445 FOXB1Q99853 325 aa16.53■□□□□ 0.24
CCDC28A-203ENST00000617445 VRK1Q99986 396 aaPredicted RBP16.53■□□□□ 0.24
CCDC28A-203ENST00000617445 RAB1BQ9H0U4 201 aa16.53■□□□□ 0.24
CCDC28A-203ENST00000617445 SAR1AQ9NR31 198 aa16.53■□□□□ 0.24
CCDC28A-203ENST00000617445 GID8Q9NWU2 228 aa16.53■□□□□ 0.24
CCDC28A-203ENST00000617445 TAS2R5Q9NYW4 299 aa16.53■□□□□ 0.24
CCDC28A-203ENST00000617445 SPEF1Q9Y4P9 236 aa16.53■□□□□ 0.24
CCDC28A-203ENST00000617445 LOC390937A0A1W2PQ73 354 aa16.52■□□□□ 0.24
CCDC28A-203ENST00000617445 KIAA1324LA8MWY0 1029 aaPredicted RBP16.52■□□□□ 0.24
CCDC28A-203ENST00000617445 C11orf98E9PRG8 122 aa16.52■□□□□ 0.24
CCDC28A-203ENST00000617445 MRASO14807 208 aa16.52■□□□□ 0.24
CCDC28A-203ENST00000617445 GPRIN2O60269 458 aa16.52■□□□□ 0.24
CCDC28A-203ENST00000617445 IGF2P01344 180 aa16.52■□□□□ 0.24
CCDC28A-203ENST00000617445 THY1P04216 161 aa16.52■□□□□ 0.24
CCDC28A-203ENST00000617445 CELA3BP08861 270 aa16.52■□□□□ 0.24
CCDC28A-203ENST00000617445 IFNGR1P15260 489 aa16.52■□□□□ 0.24
CCDC28A-203ENST00000617445 RBM34P42696 430 aaKnown RBP16.52■□□□□ 0.24
CCDC28A-203ENST00000617445 BIDP55957 195 aa16.52■□□□□ 0.24
CCDC28A-203ENST00000617445 RABL3Q5HYI8 236 aa16.52■□□□□ 0.24
CCDC28A-203ENST00000617445 TMEM54Q969K7 222 aa16.52■□□□□ 0.24
CCDC28A-203ENST00000617445 SLC25A44Q96H78 314 aaPredicted RBP16.52■□□□□ 0.24
CCDC28A-203ENST00000617445 SORCS2Q96PQ0 1159 aa16.52■□□□□ 0.24
CCDC28A-203ENST00000617445 PIMREGQ9BSJ6 248 aa16.52■□□□□ 0.24
CCDC28A-203ENST00000617445 SEC61A2Q9H9S3 476 aa16.52■□□□□ 0.24
CCDC28A-203ENST00000617445 FGFR1OP2Q9NVK5 253 aa16.52■□□□□ 0.24
CCDC28A-203ENST00000617445 ZNF503-AS2A6NEH8 195 aa16.51■□□□□ 0.23
CCDC28A-203ENST00000617445 VWC2LB2RUY7 222 aa16.51■□□□□ 0.23
CCDC28A-203ENST00000617445 FXYD1O00168 92 aa16.51■□□□□ 0.23
CCDC28A-203ENST00000617445 SLC22A2O15244 555 aa16.51■□□□□ 0.23
CCDC28A-203ENST00000617445 RNF13O43567 381 aa16.51■□□□□ 0.23
CCDC28A-203ENST00000617445 SERPINI2O75830 405 aa16.51■□□□□ 0.23
CCDC28A-203ENST00000617445 UBL3O95164 117 aa16.51■□□□□ 0.23
CCDC28A-203ENST00000617445 IFNA2P01563 188 aa16.51■□□□□ 0.23
CCDC28A-203ENST00000617445 HLA-HP01893 362 aa16.51■□□□□ 0.23
CCDC28A-203ENST00000617445 ASAH2BP0C7U1 165 aa16.51■□□□□ 0.23
CCDC28A-203ENST00000617445 CD79AP11912 226 aa16.51■□□□□ 0.23
CCDC28A-203ENST00000617445 NR4A1P22736 598 aa16.51■□□□□ 0.23
CCDC28A-203ENST00000617445 THBS4P35443 961 aa16.51■□□□□ 0.23
CCDC28A-203ENST00000617445 EVX1P49640 407 aa16.51■□□□□ 0.23
CCDC28A-203ENST00000617445 CRYBA2P53672 197 aa16.51■□□□□ 0.23
CCDC28A-203ENST00000617445 DAG1Q14118 895 aa16.51■□□□□ 0.23
CCDC28A-203ENST00000617445 C6orf52Q5T4I8 152 aa16.51■□□□□ 0.23
CCDC28A-203ENST00000617445 CYB5R2Q6BCY4 276 aa16.51■□□□□ 0.23
CCDC28A-203ENST00000617445 CARM1Q86X55 608 aa16.51■□□□□ 0.23
CCDC28A-203ENST00000617445 NEU4Q8WWR8 484 aaPredicted RBP16.51■□□□□ 0.23
CCDC28A-203ENST00000617445 ZNF566Q969W8 418 aa16.51■□□□□ 0.23
CCDC28A-203ENST00000617445 ZNF583Q96ND8 569 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 100.1 ms