RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 CNIH4Q9P003 139 aa2.16□□□□□ -2.06
SCFD1-219ENST00000556413 DHCR7Q9UBM7 475 aaKnown RBP2.16□□□□□ -2.06
SCFD1-219ENST00000556413 EIF3KQ9UBQ5 218 aaKnown RBP2.16□□□□□ -2.06
SCFD1-219ENST00000556413 CTSFQ9UBX1 484 aa2.16□□□□□ -2.06
SCFD1-219ENST00000556413 LRRK1Q38SD2 2015 aa2.16□□□□□ -2.06
SCFD1-219ENST00000556413 TRPM6Q9BX84 2022 aa2.16□□□□□ -2.06
SCFD1-219ENST00000556413 ICE1Q9Y2F5 2266 aa2.16□□□□□ -2.06
SCFD1-219ENST00000556413 TEP1Q99973 2627 aaKnown RBP2.16□□□□□ -2.06
SCFD1-219ENST00000556413 CHD5Q8TDI0 1954 aa2.16□□□□□ -2.06
SCFD1-219ENST00000556413 TLN1Q9Y490 2541 aaKnown RBP2.16□□□□□ -2.06
SCFD1-219ENST00000556413 ZNF106Q9H2Y7 1883 aaKnown RBP2.16□□□□□ -2.06
SCFD1-219ENST00000556413 USP9XQ93008 2570 aaPredicted RBP2.15□□□□□ -2.06
SCFD1-219ENST00000556413 CELSR1Q9NYQ6 3014 aa2.15□□□□□ -2.06
SCFD1-219ENST00000556413 ADGRG4Q8IZF6 3080 aa2.15□□□□□ -2.06
SCFD1-219ENST00000556413 MYO9AB2RTY4 2548 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 OR51F1A6NGY5 319 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 SIGLEC16A6NMB1 481 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 BTN3A3O00478 584 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 SLC25A14O95258 325 aaPredicted RBP2.15□□□□□ -2.07
SCFD1-219ENST00000556413 FGFR1OPO95684 399 aaKnown RBP2.15□□□□□ -2.07
SCFD1-219ENST00000556413 TXNDC12O95881 172 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 IGHV3-9P01782 118 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 CAPN1P07384 714 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 GSTA2P09210 222 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 HSD17B1P14061 328 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 ZNF7P17097 686 aaPredicted RBP2.15□□□□□ -2.07
SCFD1-219ENST00000556413 NELFEP18615 380 aaKnown RBP2.15□□□□□ -2.07
SCFD1-219ENST00000556413 HLA-DPA1P20036 260 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 PTPN4P29074 926 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 PPP2R1BP30154 601 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 RFC3P40938 356 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 SPINT3P49223 89 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 YBEYP58557 167 aaPredicted RBP2.15□□□□□ -2.07
SCFD1-219ENST00000556413 RPS15P62841 145 aaKnown RBP2.15□□□□□ -2.07
SCFD1-219ENST00000556413 SLC25A11Q02978 314 aaKnown RBP2.15□□□□□ -2.07
SCFD1-219ENST00000556413 AP1B1Q10567 949 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 PSG7Q13046 419 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 XRCC4Q13426 336 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 DPYSL3Q14195 570 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 EBI3Q14213 229 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 NCF4Q15080 339 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 TYSND1Q2T9J0 566 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 ODF2Q5BJF6 829 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 ZNF789Q5FWF6 425 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 TFDP3Q5H9I0 405 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 ACER2Q5QJU3 275 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 HENMT1Q5T8I9 393 aaKnown RBP2.15□□□□□ -2.07
SCFD1-219ENST00000556413 WDR74Q6RFH5 385 aaPredicted RBP2.15□□□□□ -2.07
SCFD1-219ENST00000556413 PRSS48Q7RTY5 328 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 PRSS42Q7Z5A4 293 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 ZSCAN30Q86W11 494 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 RNF175Q8N4F7 328 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 PQLC3Q8N755 202 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 CCNYQ8ND76 341 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 ICA1LQ8NDH6 482 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 IPMKQ8NFU5 416 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 OR4E2Q8NGC2 313 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 LKAAEAR1Q8TD35 194 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 BLOC1S5Q8TDH9 187 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 UBTD2Q8WUN7 234 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 RAPGEF5Q92565 580 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 HAS2Q92819 552 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 GLYATL1Q969I3 302 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 TMEM159Q96B96 161 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 MRPL53Q96EL3 112 aaKnown RBP2.15□□□□□ -2.07
SCFD1-219ENST00000556413 ZNF514Q96K75 400 aaPredicted RBP2.15□□□□□ -2.07
SCFD1-219ENST00000556413 CXorf58Q96LI9 332 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 C12orf66Q96MD2 445 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 PSKH2Q96QS6 385 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 CNPY3Q9BT09 278 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 CACNG6Q9BXT2 260 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 SLC7A5P2Q9GIP4 190 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 POLR1EQ9GZS1 481 aaKnown RBP2.15□□□□□ -2.07
SCFD1-219ENST00000556413 HSD3B7Q9H2F3 369 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 HAUS4Q9H6D7 363 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 Q9HAA7 133 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 FAM60AQ9NP50 221 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 FBXO8Q9NRD0 319 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 CYTL1Q9NRR1 136 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 PNPLA3Q9NST1 481 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 HRASLS2Q9NWW9 162 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 HOOK1Q9UJC3 728 aaKnown RBP2.15□□□□□ -2.07
SCFD1-219ENST00000556413 ANAPC7Q9UJX3 599 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 TFR2Q9UP52 801 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 ERVK-19Q9WJR5 959 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 FARSAQ9Y285 508 aaKnown RBP2.15□□□□□ -2.07
SCFD1-219ENST00000556413 BTRCQ9Y297 605 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 TDRKHQ9Y2W6 561 aaKnown RBP2.15□□□□□ -2.07
SCFD1-219ENST00000556413 HEY1Q9Y5J3 304 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 ARL5AQ9Y689 179 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 VPS13CQ709C8 3753 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 FLNCQ14315 2725 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 LRRK2Q5S007 2527 aa2.15□□□□□ -2.07
SCFD1-219ENST00000556413 OTOGQ6ZRI0 2925 aa2.14□□□□□ -2.07
SCFD1-219ENST00000556413 NACAE9PAV3 2078 aa2.14□□□□□ -2.07
SCFD1-219ENST00000556413 USP9YO00507 2555 aaPredicted RBP2.14□□□□□ -2.07
SCFD1-219ENST00000556413 ZNF469Q96JG9 3925 aaPredicted RBP2.14□□□□□ -2.07
SCFD1-219ENST00000556413 SPTAN1Q13813 2472 aaKnown RBP2.14□□□□□ -2.07
SCFD1-219ENST00000556413 CELSR2Q9HCU4 2923 aa2.14□□□□□ -2.07
SCFD1-219ENST00000556413 IGHV3OR16-12A0A075B7B8 117 aa2.14□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms