RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 ASB10Q8WXI3 467 aa12.16□□□□□ -0.46
CD44-224ENST00000526669 ZNF570Q96NI8 536 aa12.16□□□□□ -0.46
CD44-224ENST00000526669 ERMAPQ96PL5 475 aaPredicted RBP12.16□□□□□ -0.46
CD44-224ENST00000526669 OPN3Q9H1Y3 402 aaPredicted RBP12.16□□□□□ -0.46
CD44-224ENST00000526669 TXNIPQ9H3M7 391 aa12.16□□□□□ -0.46
CD44-224ENST00000526669 FANCFQ9NPI8 374 aa12.16□□□□□ -0.46
CD44-224ENST00000526669 USE1Q9NZ43 259 aa12.16□□□□□ -0.46
CD44-224ENST00000526669 PRSS50Q9UI38 385 aa12.16□□□□□ -0.46
CD44-224ENST00000526669 SLC5A6Q9Y289 635 aa12.16□□□□□ -0.46
CD44-224ENST00000526669 UBR5O95071 2799 aaPredicted RBP12.15□□□□□ -0.46
CD44-224ENST00000526669 LOC102725191A0A1B0GVB3 256 aa12.15□□□□□ -0.46
CD44-224ENST00000526669 ZNF726A6NNF4 738 aa12.15□□□□□ -0.46
CD44-224ENST00000526669 EEF1E1-BLOC1S5C9J1V9 151 aa12.15□□□□□ -0.46
CD44-224ENST00000526669 J3QKU1 62 aa12.15□□□□□ -0.46
CD44-224ENST00000526669 EEF1E1O43324 174 aaKnown RBP12.15□□□□□ -0.46
CD44-224ENST00000526669 AKAP8O43823 692 aaKnown RBP12.15□□□□□ -0.46
CD44-224ENST00000526669 ZG16O60844 167 aa12.15□□□□□ -0.46
CD44-224ENST00000526669 MRPL33O75394 65 aaKnown RBP12.15□□□□□ -0.46
CD44-224ENST00000526669 IGHMP01871 453 aa12.15□□□□□ -0.46
CD44-224ENST00000526669 EPHA2P29317 976 aa12.15□□□□□ -0.46
CD44-224ENST00000526669 POLR2IP36954 125 aaKnown RBP12.15□□□□□ -0.46
CD44-224ENST00000526669 CRISP1P54107 249 aa12.15□□□□□ -0.46
CD44-224ENST00000526669 MYBPC1Q00872 1141 aa12.15□□□□□ -0.46
CD44-224ENST00000526669 RUNX1T1Q06455 604 aa12.15□□□□□ -0.46
CD44-224ENST00000526669 SLC35F1Q5T1Q4 408 aa12.15□□□□□ -0.46
CD44-224ENST00000526669 RPL13AP3Q6NVV1 102 aa12.15□□□□□ -0.46
CD44-224ENST00000526669 DPY19L2P2Q6ZN68 376 aa12.15□□□□□ -0.46
CD44-224ENST00000526669 LUZP2Q86TE4 346 aa12.15□□□□□ -0.46
CD44-224ENST00000526669 CLDN22Q8N7P3 220 aa12.15□□□□□ -0.46
CD44-224ENST00000526669 RELL2Q8NC24 303 aaPredicted RBP12.15□□□□□ -0.46
CD44-224ENST00000526669 OR6K3Q8NGY3 331 aa12.15□□□□□ -0.46
CD44-224ENST00000526669 DNAJC9Q8WXX5 260 aa12.15□□□□□ -0.46
CD44-224ENST00000526669 TMEM45BQ96B21 275 aa12.15□□□□□ -0.46
CD44-224ENST00000526669 STARD4Q96DR4 205 aa12.15□□□□□ -0.46
CD44-224ENST00000526669 OR2M2Q96R28 347 aa12.15□□□□□ -0.46
CD44-224ENST00000526669 GPX7Q96SL4 187 aaPredicted RBP12.15□□□□□ -0.46
CD44-224ENST00000526669 TACO1Q9BSH4 297 aaKnown RBP12.15□□□□□ -0.46
CD44-224ENST00000526669 SFXN3Q9BWM7 321 aa12.15□□□□□ -0.46
CD44-224ENST00000526669 GP6Q9HCN6 339 aa12.15□□□□□ -0.46
CD44-224ENST00000526669 IL20Q9NYY1 176 aa12.15□□□□□ -0.46
CD44-224ENST00000526669 PROCRQ9UNN8 238 aa12.15□□□□□ -0.46
CD44-224ENST00000526669 ORC6Q9Y5N6 252 aa12.15□□□□□ -0.46
CD44-224ENST00000526669 RTTNQ86VV8 2226 aa12.14□□□□□ -0.47
CD44-224ENST00000526669 IMPA2O14732 288 aa12.14□□□□□ -0.47
CD44-224ENST00000526669 TRMUO75648 421 aaKnown RBP12.14□□□□□ -0.47
CD44-224ENST00000526669 SNAP29O95721 258 aa12.14□□□□□ -0.47
CD44-224ENST00000526669 CRHP06850 196 aa12.14□□□□□ -0.47
CD44-224ENST00000526669 OPRM1P35372 400 aa12.14□□□□□ -0.47
CD44-224ENST00000526669 DAP3P51398 398 aaKnown RBP12.14□□□□□ -0.47
CD44-224ENST00000526669 RPS6KA3P51812 740 aa12.14□□□□□ -0.47
CD44-224ENST00000526669 DBPQ10586 325 aaPredicted RBP12.14□□□□□ -0.47
CD44-224ENST00000526669 KRR1Q13601 381 aaKnown RBP12.14□□□□□ -0.47
CD44-224ENST00000526669 GINS1Q14691 196 aa12.14□□□□□ -0.47
CD44-224ENST00000526669 CDSNQ15517 529 aa12.14□□□□□ -0.47
CD44-224ENST00000526669 PGGHGQ32M88 737 aa12.14□□□□□ -0.47
CD44-224ENST00000526669 MESTQ5EB52 335 aa12.14□□□□□ -0.47
CD44-224ENST00000526669 PHYHD1Q5SRE7 291 aa12.14□□□□□ -0.47
CD44-224ENST00000526669 ARMC4Q5T2S8 1044 aa12.14□□□□□ -0.47
CD44-224ENST00000526669 TSPO2Q5TGU0 170 aa12.14□□□□□ -0.47
CD44-224ENST00000526669 ACSM5Q6NUN0 579 aa12.14□□□□□ -0.47
CD44-224ENST00000526669 TFAP2EQ6VUC0 442 aa12.14□□□□□ -0.47
CD44-224ENST00000526669 FAM122BQ7Z309 247 aa12.14□□□□□ -0.47
CD44-224ENST00000526669 ZNF610Q8N9Z0 462 aa12.14□□□□□ -0.47
CD44-224ENST00000526669 SYT14Q8NB59 555 aa12.14□□□□□ -0.47
CD44-224ENST00000526669 ZNF519Q8TB69 540 aa12.14□□□□□ -0.47
CD44-224ENST00000526669 HDAC2Q92769 488 aaKnown RBP12.14□□□□□ -0.47
CD44-224ENST00000526669 APH1AQ96BI3 265 aa12.14□□□□□ -0.47
CD44-224ENST00000526669 TOR3AQ9H497 397 aa12.14□□□□□ -0.47
CD44-224ENST00000526669 NRIP3Q9NQ35 241 aa12.14□□□□□ -0.47
CD44-224ENST00000526669 COQ3Q9NZJ6 369 aa12.14□□□□□ -0.47
CD44-224ENST00000526669 GRHPRQ9UBQ7 328 aa12.14□□□□□ -0.47
CD44-224ENST00000526669 ICE1Q9Y2F5 2266 aa12.14□□□□□ -0.47
CD44-224ENST00000526669 NKX2-6A6NCS4 301 aa12.13□□□□□ -0.47
CD44-224ENST00000526669 M0R129 80 aa12.13□□□□□ -0.47
CD44-224ENST00000526669 BHLHE40O14503 412 aa12.13□□□□□ -0.47
CD44-224ENST00000526669 DVL2O14641 736 aa12.13□□□□□ -0.47
CD44-224ENST00000526669 ARHGEF9O43307 516 aa12.13□□□□□ -0.47
CD44-224ENST00000526669 SLC43A1O75387 559 aa12.13□□□□□ -0.47
CD44-224ENST00000526669 UPK3AO75631 287 aa12.13□□□□□ -0.47
CD44-224ENST00000526669 ZNF432O94892 652 aa12.13□□□□□ -0.47
CD44-224ENST00000526669 SLC2A10O95528 541 aa12.13□□□□□ -0.47
CD44-224ENST00000526669 CGAP01215 116 aa12.13□□□□□ -0.47
CD44-224ENST00000526669 ACADSP16219 412 aa12.13□□□□□ -0.47
CD44-224ENST00000526669 HIST1H1CP16403 213 aaKnown RBP12.13□□□□□ -0.47
CD44-224ENST00000526669 NOS3P29474 1203 aa12.13□□□□□ -0.47
CD44-224ENST00000526669 SDHAP31040 664 aa12.13□□□□□ -0.47
CD44-224ENST00000526669 OR3A2P47893 321 aa12.13□□□□□ -0.47
CD44-224ENST00000526669 CSNK1A1P48729 337 aa12.13□□□□□ -0.47
CD44-224ENST00000526669 SMSP52788 366 aa12.13□□□□□ -0.47
CD44-224ENST00000526669 RAD23AP54725 363 aa12.13□□□□□ -0.47
CD44-224ENST00000526669 FOXG1P55316 489 aaPredicted RBP12.13□□□□□ -0.47
CD44-224ENST00000526669 CLRN1P58418 232 aa12.13□□□□□ -0.47
CD44-224ENST00000526669 ESRRGP62508 458 aa12.13□□□□□ -0.47
CD44-224ENST00000526669 CD47Q08722 323 aa12.13□□□□□ -0.47
CD44-224ENST00000526669 NPRL3Q12980 569 aa12.13□□□□□ -0.47
CD44-224ENST00000526669 C9orf135Q5VTT2 229 aa12.13□□□□□ -0.47
CD44-224ENST00000526669 MTFR2Q6P444 385 aa12.13□□□□□ -0.47
CD44-224ENST00000526669 PTCHD4Q6ZW05 846 aa12.13□□□□□ -0.47
CD44-224ENST00000526669 TMEM123Q8N131 208 aa12.13□□□□□ -0.47
CD44-224ENST00000526669 UBE2J2Q8N2K1 259 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 85.5 ms