RNA–Protein interactions for RNA: ENST00000518743.1

HMGB1P23-201, Transcript of high mobility group box 1 pseudogene 23, humanhuman

BASIC

Gene HMGB1P23, Length 568 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P23-201ENST00000518743 ZSCAN16Q9H4T2 348 aaPredicted RBP3.9□□□□□ -1.79
HMGB1P23-201ENST00000518743 PLEKHA3Q9HB20 300 aa3.9□□□□□ -1.79
HMGB1P23-201ENST00000518743 ELL3Q9HB65 397 aaPredicted RBP3.9□□□□□ -1.79
HMGB1P23-201ENST00000518743 NMRK1Q9NWW6 199 aa3.9□□□□□ -1.79
HMGB1P23-201ENST00000518743 SEC14L4Q9UDX3 406 aa3.9□□□□□ -1.79
HMGB1P23-201ENST00000518743 STOML2Q9UJZ1 356 aa3.9□□□□□ -1.79
HMGB1P23-201ENST00000518743 RPH3ALQ9UNE2 315 aa3.9□□□□□ -1.79
HMGB1P23-201ENST00000518743 SPACA6W5XKT8 324 aa3.9□□□□□ -1.79
HMGB1P23-201ENST00000518743 MALRD1Q5VYJ5 2156 aa3.9□□□□□ -1.79
HMGB1P23-201ENST00000518743 CMYA5Q8N3K9 4069 aa3.89□□□□□ -1.79
HMGB1P23-201ENST00000518743 LRRC30A6NM36 301 aa3.89□□□□□ -1.79
HMGB1P23-201ENST00000518743 PDLIM1O00151 329 aa3.89□□□□□ -1.79
HMGB1P23-201ENST00000518743 FBP2O00757 339 aa3.89□□□□□ -1.79
HMGB1P23-201ENST00000518743 ZNF195O14628 629 aa3.89□□□□□ -1.79
HMGB1P23-201ENST00000518743 TOX3O15405 576 aaPredicted RBP3.89□□□□□ -1.79
HMGB1P23-201ENST00000518743 NEMFO60524 1076 aa3.89□□□□□ -1.79
HMGB1P23-201ENST00000518743 SNRPCP09234 159 aaKnown RBP3.89□□□□□ -1.79
HMGB1P23-201ENST00000518743 FOLR1P15328 257 aa3.89□□□□□ -1.79
HMGB1P23-201ENST00000518743 ZNF44P15621 663 aa3.89□□□□□ -1.79
HMGB1P23-201ENST00000518743 TSPAN8P19075 237 aa3.89□□□□□ -1.79
HMGB1P23-201ENST00000518743 PPP2R1BP30154 601 aa3.89□□□□□ -1.79
HMGB1P23-201ENST00000518743 CCKARP32238 428 aa3.89□□□□□ -1.79
HMGB1P23-201ENST00000518743 HTR5AP47898 357 aa3.89□□□□□ -1.79
HMGB1P23-201ENST00000518743 RGS4P49798 205 aa3.89□□□□□ -1.79
HMGB1P23-201ENST00000518743 NUP107P57740 925 aa3.89□□□□□ -1.79
HMGB1P23-201ENST00000518743 MLF1P58340 268 aa3.89□□□□□ -1.79
HMGB1P23-201ENST00000518743 EIF2B1Q14232 305 aaKnown RBP3.89□□□□□ -1.79
HMGB1P23-201ENST00000518743 TCHHL1Q5QJ38 904 aaPredicted RBP3.89□□□□□ -1.79
HMGB1P23-201ENST00000518743 DCST2Q5T1A1 773 aa3.89□□□□□ -1.79
HMGB1P23-201ENST00000518743 BSPRYQ5W0U4 402 aa3.89□□□□□ -1.79
HMGB1P23-201ENST00000518743 TTC23Q5W5X9 447 aa3.89□□□□□ -1.79
HMGB1P23-201ENST00000518743 TRIM65Q6PJ69 517 aa3.89□□□□□ -1.79
HMGB1P23-201ENST00000518743 SCARA5Q6ZMJ2 495 aa3.89□□□□□ -1.79
HMGB1P23-201ENST00000518743 NANOGNBQ7Z5D8 188 aa3.89□□□□□ -1.79
HMGB1P23-201ENST00000518743 TSEN54Q7Z6J9 526 aaKnown RBP3.89□□□□□ -1.79
HMGB1P23-201ENST00000518743 BHLHE23Q8NDY6 225 aa3.89□□□□□ -1.79
HMGB1P23-201ENST00000518743 CELF6Q96J87 481 aaKnown RBP3.89□□□□□ -1.79
HMGB1P23-201ENST00000518743 ZNF514Q96K75 400 aaPredicted RBP3.89□□□□□ -1.79
HMGB1P23-201ENST00000518743 TCEANC2Q96MN5 208 aa3.89□□□□□ -1.79
HMGB1P23-201ENST00000518743 TBC1D10AQ9BXI6 508 aa3.89□□□□□ -1.79
HMGB1P23-201ENST00000518743 CAPS2Q9BXY5 557 aa3.89□□□□□ -1.79
HMGB1P23-201ENST00000518743 DGCR6LQ9BY27 220 aa3.89□□□□□ -1.79
HMGB1P23-201ENST00000518743 WDR13Q9H1Z4 485 aa3.89□□□□□ -1.79
HMGB1P23-201ENST00000518743 ALG9Q9H6U8 611 aa3.89□□□□□ -1.79
HMGB1P23-201ENST00000518743 VPS37BQ9H9H4 285 aa3.89□□□□□ -1.79
HMGB1P23-201ENST00000518743 DDX19AQ9NUU7 478 aaKnown RBP3.89□□□□□ -1.79
HMGB1P23-201ENST00000518743 NDE1Q9NXR1 346 aa3.89□□□□□ -1.79
HMGB1P23-201ENST00000518743 RBAKQ9NYW8 714 aaPredicted RBP3.89□□□□□ -1.79
HMGB1P23-201ENST00000518743 THYN1Q9P016 225 aa3.89□□□□□ -1.79
HMGB1P23-201ENST00000518743 KLHDC2Q9Y2U9 406 aa3.89□□□□□ -1.79
HMGB1P23-201ENST00000518743 MEIOCA2RUB1 952 aa3.88□□□□□ -1.79
HMGB1P23-201ENST00000518743 HHLA1C9JL84 531 aa3.88□□□□□ -1.79
HMGB1P23-201ENST00000518743 NPIPB9F8W1W9 429 aa3.88□□□□□ -1.79
HMGB1P23-201ENST00000518743 K7ERQ8 282 aa3.88□□□□□ -1.79
HMGB1P23-201ENST00000518743 SDHDO14521 159 aa3.88□□□□□ -1.79
HMGB1P23-201ENST00000518743 NUDT14O95848 222 aa3.88□□□□□ -1.79
HMGB1P23-201ENST00000518743 IGSF6O95976 241 aa3.88□□□□□ -1.79
HMGB1P23-201ENST00000518743 GOT2P00505 430 aaKnown RBP3.88□□□□□ -1.79
HMGB1P23-201ENST00000518743 CCDC166P0CW27 439 aa3.88□□□□□ -1.79
HMGB1P23-201ENST00000518743 ADORA3P0DMS8 318 aa3.88□□□□□ -1.79
HMGB1P23-201ENST00000518743 BCKDHAP12694 445 aa3.88□□□□□ -1.79
HMGB1P23-201ENST00000518743 ZNF30P17039 623 aa3.88□□□□□ -1.79
HMGB1P23-201ENST00000518743 NELFEP18615 380 aaKnown RBP3.88□□□□□ -1.79
HMGB1P23-201ENST00000518743 PRKACGP22612 351 aa3.88□□□□□ -1.79
HMGB1P23-201ENST00000518743 TIMP3P35625 211 aa3.88□□□□□ -1.79
HMGB1P23-201ENST00000518743 CYLC1P35663 651 aaPredicted RBP3.88□□□□□ -1.79
HMGB1P23-201ENST00000518743 MMP12P39900 470 aa3.88□□□□□ -1.79
HMGB1P23-201ENST00000518743 RPL23AP62750 156 aaKnown RBP3.88□□□□□ -1.79
HMGB1P23-201ENST00000518743 IHHQ14623 411 aa3.88□□□□□ -1.79
HMGB1P23-201ENST00000518743 SLC25A35Q3KQZ1 300 aa3.88□□□□□ -1.79
HMGB1P23-201ENST00000518743 ZNF876PQ49A33 203 aa3.88□□□□□ -1.79
HMGB1P23-201ENST00000518743 RABGAP1LQ5R372 815 aa3.88□□□□□ -1.79
HMGB1P23-201ENST00000518743 NEPROQ6NW34 567 aa3.88□□□□□ -1.79
HMGB1P23-201ENST00000518743 SCYL2Q6P3W7 929 aa3.88□□□□□ -1.79
HMGB1P23-201ENST00000518743 C22orf39Q6P5X5 142 aa3.88□□□□□ -1.79
HMGB1P23-201ENST00000518743 DOK6Q6PKX4 331 aa3.88□□□□□ -1.79
HMGB1P23-201ENST00000518743 SYT10Q6XYQ8 523 aa3.88□□□□□ -1.79
HMGB1P23-201ENST00000518743 CLEC20AQ6ZU45 233 aa3.88□□□□□ -1.79
HMGB1P23-201ENST00000518743 RUFY3Q7L099 469 aa3.88□□□□□ -1.79
HMGB1P23-201ENST00000518743 ANKRD37Q7Z713 158 aa3.88□□□□□ -1.79
HMGB1P23-201ENST00000518743 SMIM29Q86T20 159 aa3.88□□□□□ -1.79
HMGB1P23-201ENST00000518743 GRAMD2AQ8IUY3 354 aa3.88□□□□□ -1.79
HMGB1P23-201ENST00000518743 RPRMLQ8N4K4 120 aa3.88□□□□□ -1.79
HMGB1P23-201ENST00000518743 Q8N9P0 234 aaPredicted RBP3.88□□□□□ -1.79
HMGB1P23-201ENST00000518743 OR6K2Q8NGY2 324 aa3.88□□□□□ -1.79
HMGB1P23-201ENST00000518743 LINC01560Q8TB33 94 aa3.88□□□□□ -1.79
HMGB1P23-201ENST00000518743 EMG1Q92979 244 aaKnown RBP3.88□□□□□ -1.79
HMGB1P23-201ENST00000518743 LHX4Q969G2 390 aa3.88□□□□□ -1.79
HMGB1P23-201ENST00000518743 UPRTQ96BW1 309 aa3.88□□□□□ -1.79
HMGB1P23-201ENST00000518743 SLC41A3Q96GZ6 507 aa3.88□□□□□ -1.79
HMGB1P23-201ENST00000518743 C7orf34Q96L11 122 aa3.88□□□□□ -1.79
HMGB1P23-201ENST00000518743 NSMCE3Q96MG7 304 aa3.88□□□□□ -1.79
HMGB1P23-201ENST00000518743 FAM218AQ96MZ4 157 aa3.88□□□□□ -1.79
HMGB1P23-201ENST00000518743 F2RL3Q96RI0 385 aa3.88□□□□□ -1.79
HMGB1P23-201ENST00000518743 NRN1Q9NPD7 142 aa3.88□□□□□ -1.79
HMGB1P23-201ENST00000518743 DCAF13Q9NV06 445 aaKnown RBP3.88□□□□□ -1.79
HMGB1P23-201ENST00000518743 MBD2Q9UBB5 411 aa3.88□□□□□ -1.79
HMGB1P23-201ENST00000518743 BAIAP2L1Q9UHR4 511 aa3.88□□□□□ -1.79
HMGB1P23-201ENST00000518743 MAD1L1Q9Y6D9 718 aa3.88□□□□□ -1.79
HMGB1P23-201ENST00000518743 EML6Q6ZMW3 1958 aa3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms