RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 NAGAP17050 411 aa8.41□□□□□ -1.06
LIMCH1-202ENST00000381753 CDKN2CP42773 168 aa8.41□□□□□ -1.06
LIMCH1-202ENST00000381753 PPICP45877 212 aa8.41□□□□□ -1.06
LIMCH1-202ENST00000381753 RIPPLY1Q0D2K3 151 aa8.41□□□□□ -1.06
LIMCH1-202ENST00000381753 RTL8BQ17RB0 113 aa8.41□□□□□ -1.06
LIMCH1-202ENST00000381753 HSD17B12Q53GQ0 312 aa8.41□□□□□ -1.06
LIMCH1-202ENST00000381753 DCAF12L2Q5VW00 463 aa8.41□□□□□ -1.06
LIMCH1-202ENST00000381753 SP5Q6BEB4 398 aaPredicted RBP8.41□□□□□ -1.06
LIMCH1-202ENST00000381753 OR5J2Q8NH18 312 aa8.41□□□□□ -1.06
LIMCH1-202ENST00000381753 RASL11BQ9BPW5 248 aa8.41□□□□□ -1.06
LIMCH1-202ENST00000381753 TUBA1CQ9BQE3 449 aa8.41□□□□□ -1.06
LIMCH1-202ENST00000381753 MED28Q9H204 178 aa8.41□□□□□ -1.06
LIMCH1-202ENST00000381753 HEXA-AS1Q9H8Q6 139 aa8.41□□□□□ -1.06
LIMCH1-202ENST00000381753 SIDT1Q9NXL6 827 aaKnown RBP8.41□□□□□ -1.06
LIMCH1-202ENST00000381753 TRGV10A0A0A0MS01 117 aa8.41□□□□□ -1.06
LIMCH1-202ENST00000381753 C13orf42A0A1B0GVH6 325 aa8.41□□□□□ -1.06
LIMCH1-202ENST00000381753 TRIM77I1YAP6 450 aa8.41□□□□□ -1.06
LIMCH1-202ENST00000381753 HOXB3P14651 431 aaPredicted RBP8.41□□□□□ -1.06
LIMCH1-202ENST00000381753 SDC1P18827 310 aa8.41□□□□□ -1.06
LIMCH1-202ENST00000381753 PRRX1P54821 245 aa8.41□□□□□ -1.06
LIMCH1-202ENST00000381753 TMEM244Q5VVB8 128 aa8.41□□□□□ -1.06
LIMCH1-202ENST00000381753 CD276Q5ZPR3 534 aa8.41□□□□□ -1.06
LIMCH1-202ENST00000381753 CNTN4Q8IWV2 1026 aa8.41□□□□□ -1.06
LIMCH1-202ENST00000381753 SLC35F2Q8IXU6 374 aa8.41□□□□□ -1.06
LIMCH1-202ENST00000381753 ADGRG7Q96K78 797 aa8.41□□□□□ -1.06
LIMCH1-202ENST00000381753 S1PR3Q99500 378 aa8.41□□□□□ -1.06
LIMCH1-202ENST00000381753 SLC22A4Q9H015 551 aa8.41□□□□□ -1.06
LIMCH1-202ENST00000381753 DAPP1Q9UN19 280 aa8.41□□□□□ -1.06
LIMCH1-202ENST00000381753 MYO7AQ13402 2215 aa8.41□□□□□ -1.06
LIMCH1-202ENST00000381753 RP1L1Q8IWN7 2480 aaPredicted RBP8.41□□□□□ -1.06
LIMCH1-202ENST00000381753 CXorf49A8MYA2 514 aaPredicted RBP8.41□□□□□ -1.06
LIMCH1-202ENST00000381753 H7C1Q1 480 aa8.41□□□□□ -1.06
LIMCH1-202ENST00000381753 RAB40ALP0C0E4 278 aa8.41□□□□□ -1.06
LIMCH1-202ENST00000381753 BMP6P22004 513 aa8.41□□□□□ -1.06
LIMCH1-202ENST00000381753 CTSSP25774 331 aa8.41□□□□□ -1.06
LIMCH1-202ENST00000381753 KIR2DL1P43626 348 aaPredicted RBP8.41□□□□□ -1.06
LIMCH1-202ENST00000381753 ZXDBP98169 803 aa8.41□□□□□ -1.06
LIMCH1-202ENST00000381753 TBR1Q16650 682 aa8.41□□□□□ -1.06
LIMCH1-202ENST00000381753 EXOSC6Q5RKV6 272 aaKnown RBP8.41□□□□□ -1.06
LIMCH1-202ENST00000381753 BAIAP2L2Q6UXY1 529 aa8.41□□□□□ -1.06
LIMCH1-202ENST00000381753 TEX26Q8N6G2 289 aa8.41□□□□□ -1.06
LIMCH1-202ENST00000381753 FAM168AQ92567 244 aa8.41□□□□□ -1.06
LIMCH1-202ENST00000381753 SLAMF8Q9P0V8 285 aa8.41□□□□□ -1.06
LIMCH1-202ENST00000381753 SH2B3Q9UQQ2 575 aa8.41□□□□□ -1.06
LIMCH1-202ENST00000381753 WDR37Q9Y2I8 494 aa8.41□□□□□ -1.06
LIMCH1-202ENST00000381753 SSC5DA1L4H1 1573 aa8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 ZNF785A8K8V0 405 aa8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 T-ENOLP0DO92 83 aa8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 HOXD13P35453 343 aa8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 IGFBP7Q16270 282 aa8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 CLEC17AQ6ZS10 378 aa8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 KCTD9Q7L273 389 aa8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 CSNK2A3Q8NEV1 391 aa8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 OR10AD1Q8NGE0 317 aa8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 DGCR14Q96DF8 476 aaKnown RBP8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 CCDC106Q9BWC9 280 aa8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 SLCO5A1Q9H2Y9 848 aa8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 GIMAP2Q9UG22 337 aa8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 SLC23A2Q9UGH3 650 aa8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 KIF25Q9UIL4 384 aa8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 PCDHGA7Q9Y5G6 932 aa8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 PCP4L1A6NKN8 68 aa8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 HOXC4P09017 264 aaPredicted RBP8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 HOXC5Q00444 222 aa8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 SMIM21Q3B7S5 101 aa8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 ZNF695Q8IW36 515 aa8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 MARVELD2Q8N4S9 558 aa8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 OR10G3Q8NGC4 313 aa8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 TOMM40LQ969M1 308 aa8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 SAT2Q96F10 170 aaPredicted RBP8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 PLPPR2Q96GM1 343 aa8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 SAMD8Q96LT4 415 aa8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 PTDSS2Q9BVG9 487 aa8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 WDR12Q9GZL7 423 aaKnown RBP8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 PCDHGA9Q9Y5G4 932 aaKnown RBP8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 CDH10Q9Y6N8 788 aa8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 LOC285095A0A1B0GVY8 99 aa8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 CD300LBA8K4G0 201 aa8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 B4GALT3O60512 393 aa8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 ATP6V1G1O75348 118 aa8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 IFNA4P05014 189 aa8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 QDPRP09417 244 aa8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 OR4A8P0C604 315 aa8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 PRKACAP17612 351 aa8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 IDH3AP50213 366 aa8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 PGGT1BP53609 377 aa8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 SUB1P53999 127 aaKnown RBP eCLIP8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 PNLIPRP2P54317 469 aa8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 PPP1CAP62136 330 aa8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 SLC22A6Q4U2R8 563 aa8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 ARHGAP22Q7Z5H3 698 aa8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 TMED4Q7Z7H5 227 aa8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 INO80EQ8NBZ0 244 aaPredicted RBP8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 ARRDC2Q8TBH0 407 aa8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 GLYATL2Q8WU03 294 aa8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 BPIFA2Q96DR5 249 aa8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 DIRC2Q96SL1 478 aa8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 OCSTAMPQ9BR26 566 aa8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 TINAGL1Q9GZM7 467 aaPredicted RBP8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 RLIMQ9NVW2 624 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms